mRNA_C-tenellus_contig935.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig935.3.1
Unique NamemRNA_C-tenellus_contig935.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig935.3.1 vs. uniprot
Match: A0A6H5JSM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSM1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.210e-7
Identity = 28/88 (31.82%), Postives = 49/88 (55.68%), Query Frame = 3 
Query:  222 PMPSQLRLGRFLMSTIFVLYFGAALVGALEVLAVHLIIRTWLEVLVNILISLMSFWVGNNIFRWFQDWVVMDPELDPPMWVLDFCTIS 485
            P+   +R+ R     I+ L  G A+VG +E +    +   WL+++ N   + ++F VG  IF    +WV+ DP L+ P+++LD C +S
Sbjct:   60 PVEDNVRVVRHQSFVIWTLCCGTAVVGTMEAMVASYVRPWWLQIMANAGFTFLAFVVGCGIFGHSHEWVLRDPNLEKPLFLLDVCVVS 147
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig935.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSM1_9PHAE4.210e-731.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig935contigC-tenellus_contig935:2159..3589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1431
Hectar predicted targeting categorysignal peptide
Exons1
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790171.4506981-UTR-C-tenellus_contig935:2158..23581680790171.4506981-UTR-C-tenellus_contig935:2158..2358Choristocarpus tenellus KU2346UTRC-tenellus_contig935 2159..2358 +
1680790171.4791124-UTR-C-tenellus_contig935:2646..35891680790171.4791124-UTR-C-tenellus_contig935:2646..3589Choristocarpus tenellus KU2346UTRC-tenellus_contig935 2647..3589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790171.4635563-CDS-C-tenellus_contig935:2358..26461680790171.4635563-CDS-C-tenellus_contig935:2358..2646Choristocarpus tenellus KU2346CDSC-tenellus_contig935 2359..2646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig935.3.1prot_C-tenellus_contig935.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig935 2359..2646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig935.3.1

>prot_C-tenellus_contig935.3.1 ID=prot_C-tenellus_contig935.3.1|Name=mRNA_C-tenellus_contig935.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=96bp
MLFNIATPMPSQLRLGRFLMSTIFVLYFGAALVGALEVLAVHLIIRTWLE
VLVNILISLMSFWVGNNIFRWFQDWVVMDPELDPPMWVLDFCTIS*
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mRNA from alignment at C-tenellus_contig935:2159..3589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig935.3.1 ID=mRNA_C-tenellus_contig935.3.1|Name=mRNA_C-tenellus_contig935.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1431bp|location=Sequence derived from alignment at C-tenellus_contig935:2159..3589+ (Choristocarpus tenellus KU2346)
TGGTTCTTGATTGGGATTACCTCATGGGGATACACCTTCAAGCTCCAAGG
GCGTCTGACTCCCCGAAGCCACGTCGTTGATAACGTAAGAAAATGAATGA
AACGTTTGATCTCGTTGCTAGTTACGTCAAGTACTATCTTAGACTGATCA
TCGAGCTCTCGCTAAACCTGGTTGTAGGATAGATTTCCCATTGGGGTGTC
ATGCTTTTCAACATTGCAACGCCCATGCCCTCTCAGCTGCGTTTGGGAAG
GTTCCTCATGAGCACGATCTTCGTCTTGTACTTCGGGGCGGCACTTGTTG
GTGCCCTGGAGGTCTTAGCTGTCCATCTCATCATCAGGACCTGGCTGGAG
GTGCTGGTGAATATTTTGATAAGCCTAATGTCGTTCTGGGTTGGGAACAA
TATTTTTCGTTGGTTCCAAGATTGGGTCGTGATGGATCCCGAATTGGATC
CCCCTATGTGGGTGTTAGACTTCTGCACCATCAGTTGATGGTGCATGGTG
CATGTTGCATGGTGGGTGTTTGGTCGACGTGCCTAGATGTTTCACGGTCG
AGAATAGTTTTATCAATATAGGCGGGGGGGAAAGGGAATCGGCGTTGTGT
GATGCTTGAATCTACCCTAGTGCTATCAGGATGTTGCTCCTTACGACGAG
GTAGTAGTGGAATAGTAGTAGAAGAAATCTTGGGTGAGGTATTTCATGTG
TATTGTTCTTGAACTGGCTGGTGACCAGTAGTGGACTGTAGACTGGATGA
TATTGGCCTCATACTTCATACGCTATTTACTGACACAGTGGAGTTTTGGT
TCAGGAGAGTACCTCTTATACTGCAATTCCCTGCATAAGAGGAACCATTG
TAGACCCTTGCTATAGTTCAACCAGAAAATCGTACATCAAACCCTTTGAG
CCAACTGGACTTGAATACTTCGAATAGGCACCATGGTCTGTGCTCGATTC
CGAAGTTCAATACAACTATGATACCATGGCGAGATCCAGAAGGGGACTGA
GCATTGTGCAATGCTCACCTATGTGTGTATTGTTGAATAACCTCTTAGAC
CTGTGGTGAAGATGATGTGCTGTACAAGATGATATTACTTGGTTATCAAT
CTTACTTTGGCTTCAACAATTGACCTATGGTCTCACTTCTTCTGACTGAG
CATGGTCCAGAAGGAGGGGACAAAGATACATAGGCTTACCTACAGAGTGA
AAGTGTCTTAGAGGGTACGAGTTTTGTCCTATTTGTATGTTTGATGCTTG
TCTTCCCAAGGGTTCTTTGTGGCATTTAATCTGATCCGAAACGTTTTGGA
GTAGGTAAAATGTATACGTTATGAAAAGGTATGTCCGGAACAAGATCATT
GACACTTCCTAACAAACACAATACCAAAATTACATCAAAACCATGACATT
GGATTTTGGCCCCCAACGGACGCGGCTCTAC
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Coding sequence (CDS) from alignment at C-tenellus_contig935:2159..3589+

>mRNA_C-tenellus_contig935.3.1 ID=mRNA_C-tenellus_contig935.3.1|Name=mRNA_C-tenellus_contig935.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=288bp|location=Sequence derived from alignment at C-tenellus_contig935:2159..3589+ (Choristocarpus tenellus KU2346)
ATGCTTTTCAACATTGCAACGCCCATGCCCTCTCAGCTGCGTTTGGGAAG
GTTCCTCATGAGCACGATCTTCGTCTTGTACTTCGGGGCGGCACTTGTTG
GTGCCCTGGAGGTCTTAGCTGTCCATCTCATCATCAGGACCTGGCTGGAG
GTGCTGGTGAATATTTTGATAAGCCTAATGTCGTTCTGGGTTGGGAACAA
TATTTTTCGTTGGTTCCAAGATTGGGTCGTGATGGATCCCGAATTGGATC
CCCCTATGTGGGTGTTAGACTTCTGCACCATCAGTTGA
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