mRNA_C-tenellus_contig9348.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9348.1.1
Unique NamemRNA_C-tenellus_contig9348.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9348.1.1 vs. uniprot
Match: D8LKM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.560e-17
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 QVVLVSPALLYAFAVVLWLFDGKDIEYARELAPLSFAALCVHLFAAGEV 147
            Q+VLV+PA LYA AVV+WL   +DIE+ARELAP+SFA+LCVHLFAAGE+
Sbjct:  110 QIVLVAPAFLYAMAVVMWLSQDEDIEFARELAPVSFASLCVHLFAAGEI 158
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9348.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKM3_ECTSI1.560e-1773.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9348contigC-tenellus_contig9348:5763..5909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size147
Hectar predicted targeting categorysignal peptide
Exons1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790171.333826-CDS-C-tenellus_contig9348:5762..59091680790171.333826-CDS-C-tenellus_contig9348:5762..5909Choristocarpus tenellus KU2346CDSC-tenellus_contig9348 5763..5909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9348.1.1prot_C-tenellus_contig9348.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9348 5763..5909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9348.1.1

>prot_C-tenellus_contig9348.1.1 ID=prot_C-tenellus_contig9348.1.1|Name=mRNA_C-tenellus_contig9348.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=49bp
QVVLVSPALLYAFAVVLWLFDGKDIEYARELAPLSFAALCVHLFAAGEV
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mRNA from alignment at C-tenellus_contig9348:5763..5909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9348.1.1 ID=mRNA_C-tenellus_contig9348.1.1|Name=mRNA_C-tenellus_contig9348.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=147bp|location=Sequence derived from alignment at C-tenellus_contig9348:5763..5909+ (Choristocarpus tenellus KU2346)
CAGGTGGTGCTGGTGTCCCCAGCCTTGTTGTACGCCTTTGCGGTTGTCTT
GTGGTTGTTTGATGGAAAGGATATAGAGTATGCTCGAGAACTGGCGCCAC
TATCCTTTGCCGCACTGTGTGTGCATCTCTTTGCTGCTGGAGAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9348:5763..5909+

>mRNA_C-tenellus_contig9348.1.1 ID=mRNA_C-tenellus_contig9348.1.1|Name=mRNA_C-tenellus_contig9348.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=147bp|location=Sequence derived from alignment at C-tenellus_contig9348:5763..5909+ (Choristocarpus tenellus KU2346)
CAGGTGGTGCTGGTGTCCCCAGCCTTGTTGTACGCCTTTGCGGTTGTCTT
GTGGTTGTTTGATGGAAAGGATATAGAGTATGCTCGAGAACTGGCGCCAC
TATCCTTTGCCGCACTGTGTGTGCATCTCTTTGCTGCTGGAGAGGTG
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