mRNA_C-tenellus_contig9338.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9338.1.1
Unique NamemRNA_C-tenellus_contig9338.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9338.1.1 vs. uniprot
Match: D7FQ35_ECTSI (Chloride channel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ35_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.200e-12
Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 2 
Query: 1652 RQRGLAFATCISSGVSSSREGMLDLAAAVDRKRKGLIRR-NKNYMNAAKQIANQKRGVTNSYKTEGSYTKYKKIVSFLVLLGIITGLGSRGIDRAIVEMQALRSWATEEENTL-GLTYSVRFVLFWLYMEAGVCLASLVTARYAPDIAGSGIP 2104
            R RG A A+  SS ++S   G             G ++R +    N AK +++QKRGVT SYK+E  Y +Y KI  FLV++G++ GLGS GID  I     L     E+   L G +   +F  F LY      +A+++TA ++P + GSGIP
Sbjct:  520 RSRGGASASVASSHINSLGRGASGDGGGAGG---GTMKRPSARLQNEAKHVSDQKRGVTTSYKSEELYKQYHKISFFLVVMGVVIGLGSHGIDEGIELFVHLGEEIMEKGGALLGGSTGAKFFFFLLYDIILTGIAAMLTAYFSPGVEGSGIP 669
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BLAST of mRNA_C-tenellus_contig9338.1.1 vs. uniprot
Match: A0A6H5JIC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.320e-12
Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 2 
Query: 1652 RQRGLAFATCISSGVSSSREGMLDLAAAVDRKRKGLIRR-NKNYMNAAKQIANQKRGVTNSYKTEGSYTKYKKIVSFLVLLGIITGLGSRGIDRAIVEMQALRSWATEEENTL-GLTYSVRFVLFWLYMEAGVCLASLVTARYAPDIAGSGIP 2104
            R RG A A+  SS ++S   G  +          G ++R +    N AK  ++QKRGVT SYK+E  Y +Y KI  FLV++G++ GLGS GID  I     L     E+   L G +   +F  F LY      +A+++TA ++P + GSGIP
Sbjct:  525 RSRGGASASVASSYINSLGRGASEDGRGASG---GTMKRPSARLQNEAKHFSDQKRGVTTSYKSEELYKQYHKISFFLVVMGVVIGLGSHGIDEGIQIFVHLGEDIMEKGGALLGGSTGAKFFCFLLYDIILTGIAAMLTAYFSPGVEGSGIP 674
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9338.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ35_ECTSI1.200e-1237.25Chloride channel protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JIC8_9PHAE2.320e-1237.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9338contigC-tenellus_contig9338:1441..5871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQ35
PFAMsCBS,Voltage_CLC
Model size2106
Max annot lvl2759|Eukaryota
KEGG koko:K05011
KEGG TC2.A.49.2.12,2.A.49.2.13,2.A.49.2.6,2.A.49.2.7
KEGG Pathwayko04978,map04978
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.58e-13
EggNOG OGsCOG0038@1|root,KOG0476@2759|Eukaryota
Descriptionvoltage-gated chloride channel activity
Cds size1896
COG categoryP
BRITEko00000,ko00001,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790171.0059836-UTR-C-tenellus_contig9338:1440..16481680790171.0059836-UTR-C-tenellus_contig9338:1440..1648Choristocarpus tenellus KU2346UTRC-tenellus_contig9338 1441..1648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790171.0259547-CDS-C-tenellus_contig9338:1648..28361680790171.0259547-CDS-C-tenellus_contig9338:1648..2836Choristocarpus tenellus KU2346CDSC-tenellus_contig9338 1649..2836 +
1680790171.0390675-CDS-C-tenellus_contig9338:3214..36091680790171.0390675-CDS-C-tenellus_contig9338:3214..3609Choristocarpus tenellus KU2346CDSC-tenellus_contig9338 3215..3609 +
1680790171.0507545-CDS-C-tenellus_contig9338:4905..50521680790171.0507545-CDS-C-tenellus_contig9338:4905..5052Choristocarpus tenellus KU2346CDSC-tenellus_contig9338 4906..5052 +
1680790171.060924-CDS-C-tenellus_contig9338:5705..58711680790171.060924-CDS-C-tenellus_contig9338:5705..5871Choristocarpus tenellus KU2346CDSC-tenellus_contig9338 5706..5871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9338.1.1prot_C-tenellus_contig9338.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9338 1649..5871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9338.1.1

>prot_C-tenellus_contig9338.1.1 ID=prot_C-tenellus_contig9338.1.1|Name=mRNA_C-tenellus_contig9338.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=632bp
MSYHEPTIKGNTSETPTAGSERDGTSSANEGSGGGIVQDGRLRRMGSSSS
SFAGTGSVNHSDVPIRQRRYTMSTPIPSKAVQEGAPRHIPVCGQQHPPTR
KRSMSHLSGQHTNVRVEDVEDRERSFTHSSSLKPPRGKVSFTSKQGVIRK
HRATRSMPSVVDLFNLTQEQAPTLKTRAPTTDSMSAQPTLLQDPALELSR
PSPHPPPQPPPGGGDGGNLRVDRKDHLCSRYGSPHPPTGRDDGEQLLGLL
GSSDTQGSQESLGLGVLSEHYGVVPKQNNAFETNVDILDSGNRRQSLKLN
PEFPSSELLADLQENRARCMGSEEEPVVGGEGGGVGGGTQDGHGVGWEDS
DSNIVKERSQPPNSPGKRLRKHLSTVETSRNVPNDRFSCNTNDEGKDTEE
SPKGYRSPSSLSPVPDQCSAPLDCIPPLSKPSPPLPSQQHGDNHHSHGPS
TLSSVFAPVEDSDGSGGTDRISMQEEEPWPDRQRGLAFATCISSGVSSSR
EGMLDLAAAVDRKRKGLIRRNKNYMNAAKQIANQKRGVTNSYKTEGSYTK
YKKIVSFLVLLGIITGLGSRGIDRAIVEMQALRSWATEEENTLGLTYSVR
FVLFWLYMEAGVCLASLVTARYAPDIAGSGIP
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mRNA from alignment at C-tenellus_contig9338:1441..5871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9338.1.1 ID=mRNA_C-tenellus_contig9338.1.1|Name=mRNA_C-tenellus_contig9338.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4431bp|location=Sequence derived from alignment at C-tenellus_contig9338:1441..5871+ (Choristocarpus tenellus KU2346)
CTATTTCCACTCTAACTACTAACTGGTTCGTTAGAGAGAGAGAGATTGCA
CTACGCTTAGTTTACATGCCTACAACATGAAGTGTGATACACATAATGTG
GTGATAGGACACAATATTTCTTAATGGTGAGAGGAAGCGGTTGTCAATAT
CTACAATTGTCTTCATCTTCTGTTATACATACTCACACCCATTTTGTCGG
TCAATATCATGTCATATCATGAGCCGACCATCAAGGGTAACACGTCCGAG
ACTCCAACAGCTGGAAGTGAACGAGATGGCACCAGCAGTGCCAATGAGGG
GTCGGGTGGTGGGATTGTTCAGGACGGAAGATTGCGAAGAATGGGAAGCT
CTTCGTCATCTTTCGCAGGGACGGGATCGGTTAACCACTCTGATGTACCC
ATCAGACAACGCCGATATACTATGTCTACACCGATCCCATCGAAGGCAGT
ACAGGAAGGAGCTCCACGCCATATTCCAGTCTGCGGACAGCAGCACCCGC
CAACTCGAAAGCGCTCGATGTCACATTTGTCAGGACAACATACGAACGTT
CGTGTTGAAGATGTCGAAGACAGAGAACGCAGCTTTACACATTCTTCGTC
ATTGAAACCACCACGGGGAAAGGTTTCATTCACCTCCAAACAGGGTGTGA
TCCGCAAACACAGGGCCACAAGGTCGATGCCTAGCGTAGTAGACCTTTTC
AACCTAACACAGGAACAAGCCCCAACTCTGAAAACGCGAGCACCGACTAC
GGATTCAATGAGCGCTCAACCCACTCTACTACAGGATCCTGCTCTGGAAC
TGTCTCGTCCGTCTCCGCACCCTCCTCCCCAACCCCCTCCAGGAGGGGGC
GATGGAGGGAATCTGCGTGTCGATCGTAAGGACCACTTATGTTCAAGGTA
CGGCTCTCCTCATCCACCCACAGGAAGAGATGATGGCGAACAGTTGCTAG
GTCTGCTTGGGAGCTCCGACACTCAAGGTTCACAAGAGTCACTAGGACTA
GGAGTGCTCTCTGAGCATTATGGTGTGGTACCAAAACAAAATAATGCTTT
CGAGACAAATGTGGATATTCTTGATTCGGGCAATCGGCGCCAGTCACTGA
AGCTGAACCCTGAATTTCCCAGCAGTGAATTGTTGGCCGACTTGCAGGAG
AATAGAGCACGTTGCATGGGATCCGAGGAGGAGCCTGTAGTAGGTGGGGA
GGGCGGAGGGGTTGGCGGTGGGACTCAGGATGGGCATGGGGTGGGATGGG
AGGATTCGGACAGTAATATAGTCAAGGAGAGATCGCAGCCGCCCAATAGC
CCGGGGAAGAGGTTGAGAAAGCATTTGTCCACAGTGGAAACTTCAAGGAA
TGTGCCAAACGACCGCTTCTCATGCAATACTAATGATGAGGGGAAGGTGC
GAAGCATGTGTTTTGTGTTTGAAGTTAGTGTATTTCAGTGAAGTGCTGTT
GTGTACTTGGTGGCTGTCTTGATTTCAACAGCACTCACTAGGAAGTAGAA
ATTGGAAGTTTTTAACCTCTAAATCCAACTGCTTAATTCTATCCTTGCCT
GGTAGCAGATGATTCATGCAGTGAACCTTGAAAGAGCAACATAGGGAGGT
CACAGAGGATCTCATCGGTGATTTCTATTCTAGGAACAGTTACTTTAGAC
CAGCAATTGATGCAAACCATACAAAAAACCTAGGCCCAACATTGAAAACA
ACTTTGACCCAGACGTTAGTAATTCCCCCCCTCCCCCCTTGTACTTTTTC
CGTCTGTCTGGCTTGGATTCTCAGGATACTGAGGAGAGTCCCAAGGGCTA
TCGCTCACCTTCTAGTCTGTCTCCTGTTCCCGATCAATGCTCTGCCCCAC
TGGATTGTATCCCCCCTTTATCGAAACCATCACCGCCACTCCCATCTCAG
CAGCATGGTGATAACCATCACTCCCATGGCCCATCAACATTAAGCTCTGT
CTTTGCTCCTGTCGAAGACAGTGATGGCAGTGGTGGAACCGACAGGATCT
CAATGCAGGAGGAGGAACCATGGCCGGATCGGCAAAGGGGGCTTGCTTTC
GCAACTTGCATTTCGTCAGGAGTTTCTAGTAGCAGGGAGGGGATGTTGGA
CTTGGCGGCAGCTGTTGACCGAAAGAGGAAGGGTTTGATCCGCAGGAACA
AGAACTATATGAATGCAGCGTGAGTGTCCTCCTCGTGTGTGCAAGCATTG
TGGGTGTTGTAAGTACACGCACGGAGTGTGCACCGGGGACAAGATGATTT
TTGTACAGTGTAAGTGTAGCGTGACAAATGCCCCCCCTTTGAGCAAAGTC
ACTCTCAATGGAAACGTTGGGCGAGTGGAAATTTCTTCTGGTTGCAAGTT
TGTCGTACTCATTGGAGCCGCACACTTTTTTGTTTTTATTACGTAAAAAA
ATAAGCTTTTTTGTTAACCCGCAGTTTTAATTGTGACATCTGCCCTGCGC
ATTGCCCTAAACTCCTGCGAACCGTATCCCTACAACGGTGAAAAAGGGTT
TTCCAACACCTTTGTGAGGCTTCACAACTTTTTTTTCTTCTATTGTGGTT
GAGTAGGGGTTCTCAAACGTGGAGTAACATATTTTGTGTGTGATCTTCAT
TTCATCTATAATCTGTGTGTTTTTGACATGTGTTTTTTGATGTTGGGGTG
CGTTATTCACTCTCATTGATTTACTGTTTTACTATCCTGGTGGTGCTCAG
GAGTGGGGTTTGACTTTTCAAGGCTCTGGGGGCACAAGCTTGTAACATGA
TGTTGTGCTATGTTGGAGTAGGTACTAACTAAAGTGTGGAGGATGAGGAG
GTTAGGAGGTGTGTGCGCCAGGAGTAGAGGAATAGAGTGAGATCATACTA
TGCAATCATCCACACACACATGCTTGTGGCAAACAAATAACCCTAACCCT
CAAACATCTAATGCATCCTTCGCTGTGGTGTGTAGTAGCAATAGCAAGAC
CAGTGGCTCATGCTGGACCTCCCCCCCCTCTCGTGGTAAACAACACTGGG
AAGCACGCACCCTCATCACAAGCCGTTGCACTACTAGATGTGTGTTGTCA
TTTTAAACACGTTGTGCATTTGAAGTGTTATTTGGTCAGCGCTATGGAGT
CCCTTAGCTACACTCACCCCCCCTACACGAGAAGGTATCTGACATCATAG
TACATGATCATGATGAGAGGTATCTATATGGATGACTTCATTTTCTTCCA
CATAGGAACCCGGTCTCCCATCCGTCCTCCCGACTGGCCGACTGCCCCGT
CCATCTATCCATCCATTATCTGTCTGTTCCTACACTTTTTTTTAACCTCC
TGTTCCCGTGTCGGTGCCCCTTGTCATACATACATACATACATACATACA
TACATACATAATGCATGCATCTGTCCATACAATACATAAATTATACTCTT
TTTTTTCCTTCTCTCTTTGTTTGTTTGTAATGTCTTTGTCTTTGTTTTTG
TTTTTGTTGACTCAGCAAGCAAATAGCGAACCAGAAGAGGGGTGTTACAA
ACTCTTACAAGACCGAAGGTTCCTACACAAAGTACAAGAAGATCGTGTCT
TTTCTCGTGCTGCTGGGGATCATCACCGGACTGGGCTCCAGGGGCATCGA
CCGCGCTATTGTGTGAGCAGAGAGTGTTCAACTGTGTTATCTGTGTGCAG
GCTGGCATCTGTCTGCGCGCATGCACGCGCGCCTCTGTGTATTTTTAAAC
CGCCGTTAACCCTAACCCTAGTGTCTTGACATTTCAGTCCCGATGCTCAA
CGGGTCTCCTCTCGGTAACTTACCAGATAGTAATGAAATATATATATATA
TATATATAGGGGAGAGGCTTCATTCAGGGTGGGCAAGTTTTTTTTTCCGA
GTAAGGTTTGTGTTGGTTGAGTTGGTTGTGTTGGTTGTGTAGGTGCTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTGTGTTTGATTGTGTC
AAGAGAAATAACTCCTTGTATCCCGCCGTAGCTCTTTTTTTTTCTCTTTG
TTCTTTTTTGTTCTTTTTGTTCTATTTGCTCTCTTTGTTCTTTTTGTTGT
ATAGATTTCCCCCGCCCGCCCCCTGAATCCATGTTTCCTGTCCCCTTCCC
CCACCACCCTCCACTTTCCTTTTTTGAAGTCGTGGCCAACCCCTAAGTCC
CTTCCCCTTGCCCCTTGGCGAAATGCTTCACAATCTAGCTCGTGGTACGA
TGTGATATTTCCCTAACCCTAGCCCTAACCCTAGCCCTAACCCTAACTCT
AACCCTGACTCTCAGTGAGATGCAGGCGCTACGTAGCTGGGCCACGGAAG
AAGAGAATACTCTGGGGCTAACGTACTCAGTGCGGTTTGTCCTGTTTTGG
TTGTACATGGAGGCTGGGGTGTGTTTGGCATCTCTAGTCACAGCCCGTTA
TGCACCAGATATTGCTGGGTCGGGTATCCCG
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Coding sequence (CDS) from alignment at C-tenellus_contig9338:1441..5871+

>mRNA_C-tenellus_contig9338.1.1 ID=mRNA_C-tenellus_contig9338.1.1|Name=mRNA_C-tenellus_contig9338.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1896bp|location=Sequence derived from alignment at C-tenellus_contig9338:1441..5871+ (Choristocarpus tenellus KU2346)
ATGTCATATCATGAGCCGACCATCAAGGGTAACACGTCCGAGACTCCAAC
AGCTGGAAGTGAACGAGATGGCACCAGCAGTGCCAATGAGGGGTCGGGTG
GTGGGATTGTTCAGGACGGAAGATTGCGAAGAATGGGAAGCTCTTCGTCA
TCTTTCGCAGGGACGGGATCGGTTAACCACTCTGATGTACCCATCAGACA
ACGCCGATATACTATGTCTACACCGATCCCATCGAAGGCAGTACAGGAAG
GAGCTCCACGCCATATTCCAGTCTGCGGACAGCAGCACCCGCCAACTCGA
AAGCGCTCGATGTCACATTTGTCAGGACAACATACGAACGTTCGTGTTGA
AGATGTCGAAGACAGAGAACGCAGCTTTACACATTCTTCGTCATTGAAAC
CACCACGGGGAAAGGTTTCATTCACCTCCAAACAGGGTGTGATCCGCAAA
CACAGGGCCACAAGGTCGATGCCTAGCGTAGTAGACCTTTTCAACCTAAC
ACAGGAACAAGCCCCAACTCTGAAAACGCGAGCACCGACTACGGATTCAA
TGAGCGCTCAACCCACTCTACTACAGGATCCTGCTCTGGAACTGTCTCGT
CCGTCTCCGCACCCTCCTCCCCAACCCCCTCCAGGAGGGGGCGATGGAGG
GAATCTGCGTGTCGATCGTAAGGACCACTTATGTTCAAGGTACGGCTCTC
CTCATCCACCCACAGGAAGAGATGATGGCGAACAGTTGCTAGGTCTGCTT
GGGAGCTCCGACACTCAAGGTTCACAAGAGTCACTAGGACTAGGAGTGCT
CTCTGAGCATTATGGTGTGGTACCAAAACAAAATAATGCTTTCGAGACAA
ATGTGGATATTCTTGATTCGGGCAATCGGCGCCAGTCACTGAAGCTGAAC
CCTGAATTTCCCAGCAGTGAATTGTTGGCCGACTTGCAGGAGAATAGAGC
ACGTTGCATGGGATCCGAGGAGGAGCCTGTAGTAGGTGGGGAGGGCGGAG
GGGTTGGCGGTGGGACTCAGGATGGGCATGGGGTGGGATGGGAGGATTCG
GACAGTAATATAGTCAAGGAGAGATCGCAGCCGCCCAATAGCCCGGGGAA
GAGGTTGAGAAAGCATTTGTCCACAGTGGAAACTTCAAGGAATGTGCCAA
ACGACCGCTTCTCATGCAATACTAATGATGAGGGGAAGGATACTGAGGAG
AGTCCCAAGGGCTATCGCTCACCTTCTAGTCTGTCTCCTGTTCCCGATCA
ATGCTCTGCCCCACTGGATTGTATCCCCCCTTTATCGAAACCATCACCGC
CACTCCCATCTCAGCAGCATGGTGATAACCATCACTCCCATGGCCCATCA
ACATTAAGCTCTGTCTTTGCTCCTGTCGAAGACAGTGATGGCAGTGGTGG
AACCGACAGGATCTCAATGCAGGAGGAGGAACCATGGCCGGATCGGCAAA
GGGGGCTTGCTTTCGCAACTTGCATTTCGTCAGGAGTTTCTAGTAGCAGG
GAGGGGATGTTGGACTTGGCGGCAGCTGTTGACCGAAAGAGGAAGGGTTT
GATCCGCAGGAACAAGAACTATATGAATGCAGCCAAGCAAATAGCGAACC
AGAAGAGGGGTGTTACAAACTCTTACAAGACCGAAGGTTCCTACACAAAG
TACAAGAAGATCGTGTCTTTTCTCGTGCTGCTGGGGATCATCACCGGACT
GGGCTCCAGGGGCATCGACCGCGCTATTGTTGAGATGCAGGCGCTACGTA
GCTGGGCCACGGAAGAAGAGAATACTCTGGGGCTAACGTACTCAGTGCGG
TTTGTCCTGTTTTGGTTGTACATGGAGGCTGGGGTGTGTTTGGCATCTCT
AGTCACAGCCCGTTATGCACCAGATATTGCTGGGTCGGGTATCCCG
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