mRNA_C-tenellus_contig930.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig930.6.1
Unique NamemRNA_C-tenellus_contig930.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig930.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig930contigC-tenellus_contig930:8479..12876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1702
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003910.1
Cds size885
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig930.6.1prot_C-tenellus_contig930.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig930 8491..12071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790169.6112697-UTR-C-tenellus_contig930:8478..84901680790169.6112697-UTR-C-tenellus_contig930:8478..8490Choristocarpus tenellus KU2346UTRC-tenellus_contig930 8479..8490 +
1680790169.6871557-UTR-C-tenellus_contig930:12071..128761680790169.6871557-UTR-C-tenellus_contig930:12071..12876Choristocarpus tenellus KU2346UTRC-tenellus_contig930 12072..12876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790169.6239243-CDS-C-tenellus_contig930:8490..89101680790169.6239243-CDS-C-tenellus_contig930:8490..8910Choristocarpus tenellus KU2346CDSC-tenellus_contig930 8491..8910 +
1680790169.6382027-CDS-C-tenellus_contig930:9301..94241680790169.6382027-CDS-C-tenellus_contig930:9301..9424Choristocarpus tenellus KU2346CDSC-tenellus_contig930 9302..9424 +
1680790169.648995-CDS-C-tenellus_contig930:11013..111111680790169.648995-CDS-C-tenellus_contig930:11013..11111Choristocarpus tenellus KU2346CDSC-tenellus_contig930 11014..11111 +
1680790169.6595943-CDS-C-tenellus_contig930:11579..118111680790169.6595943-CDS-C-tenellus_contig930:11579..11811Choristocarpus tenellus KU2346CDSC-tenellus_contig930 11580..11811 +
1680790169.674711-CDS-C-tenellus_contig930:12059..120711680790169.674711-CDS-C-tenellus_contig930:12059..12071Choristocarpus tenellus KU2346CDSC-tenellus_contig930 12060..12071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig930.6.1

>prot_C-tenellus_contig930.6.1 ID=prot_C-tenellus_contig930.6.1|Name=mRNA_C-tenellus_contig930.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=295bp
MGDDEHHVGSPFFRESSGRNGGLKSVEVDTRRLGTRETGSETEPASREMA
SGLEGEGSEGEGQAGITSGIESILKQGSNLESNGEGEETGEVGMMQGKVR
HKELQQQLKKFSDKANEAFHSLTNRFIEANTSLQQIQSDQENMLSEEKTT
SNILMEQRVRVKEAAARLQTDLLEALEFSSPENIGIRGRQSTFIDGSDNS
SQRGGSFSSDEATRGKGRVTDGGPRVDGNGFCPSQEHKMGQFFNGANRQS
PTGSTLGCPTYVKGRVVPQGIKVRKTGEIEGEGVKGSAVGRWHQ*
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mRNA from alignment at C-tenellus_contig930:8479..12876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig930.6.1 ID=mRNA_C-tenellus_contig930.6.1|Name=mRNA_C-tenellus_contig930.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4398bp|location=Sequence derived from alignment at C-tenellus_contig930:8479..12876+ (Choristocarpus tenellus KU2346)
GGAAAAGAGGACATGGGAGATGATGAACATCACGTGGGTTCGCCGTTCTT
TCGGGAAAGTAGTGGGCGGAATGGGGGGCTTAAATCAGTTGAAGTGGATA
CACGGAGGCTGGGGACGAGGGAAACAGGATCCGAAACGGAACCTGCCTCA
CGTGAGATGGCTTCGGGCCTGGAAGGAGAAGGGAGTGAAGGGGAGGGGCA
AGCAGGAATTACAAGTGGGATAGAATCGATACTAAAGCAAGGCAGCAACC
TGGAGAGTAATGGGGAAGGAGAAGAGACTGGTGAAGTAGGTATGATGCAG
GGGAAAGTCCGACATAAGGAGCTCCAGCAACAACTGAAGAAATTTTCTGA
CAAGGCTAATGAAGCTTTTCACAGTCTTACCAACCGATTCATCGAGGCCA
ATACCTCTCTTCAACAAATTCAAAGTGACCAGGCAAGCGATAATTGCGAC
TACGTAATCTTTCCTGCAAAGTCACGACCTAGTAGACTGGCACATAAGTG
ATATGATGGTGAAGTAGGAATCAGTCAAGTAATTCCGAGGAAGGTATGTT
CGTAGGGTCAAGGAGACAGGGCAGTGCACAAAGAATCTGGGTAAAGGTGG
AACTACTGGGATTGAAAAGGGAGGACCTTGATATCGTCATACTAGGCTGT
ATATGTACTTTACATTGGAGTATCGTGTAGGTGAGGGCGAAGCTAACTAC
CGAGTCATTTTGTGCTTCTCAGCCCACAGTACACACAGATGTGGCAGAGA
TATGTCAAGCAGGATGATCATGTTGCTCTCCCCCTCTTCCATGACACACC
TCTATGCTTGCGTATTTGGCCAGGAAAATATGCTATCGGAAGAGAAGACT
ACCTCCAACATATTAATGGAACAAAGAGTTCGAGTCAAGGAGGCTGCAGC
ACGACTACAGACCGACCTACTAGAAGCCCTCGAGTTTTCATCCCCCGTGA
GTCGATTTGAATTTATATGGGTAAAGCAGTGTCAACAACAATGTCTGTGT
CTAAGAAAGCTGGGGCTTACGGTGGGATATGCTCAAATATTCGTGCAAGA
AGCACAGCATCAATCTCAAGCATTCCTTACAAAATTGTACTGAGTAGTTG
TATGTAGCTTTTCCTCCTGCTGTCAGGTGCTTGATTGAATACGCCCTAAG
TCATCCTCAATATTGCACGCATAATATCACCCATGTTGCAGATATCCGCA
TAAAAACATACCAAACATCACGATATTGCCTATTTTTGTGCGACAAAGTA
CTTTGGAGTACTTGAAAGAAGAGAACAGTAACATGTAACTACTTATGCAA
ATATGTTGGTTGTTGCACATGATGCTCGAAGTAGGTGCTTTGTAGTAGGT
CACTGCTACATGTCTCTGCTCATCCCCTTTCCCCCGTCTTTTTCTGGTAA
CTTAATGTTCTTCCTCCAAGTACCTTATACCTCCCAAACTAATTTCATTC
TACAGAATACACGACAGTGGAAGGCTCCAAACGAGGAAACAAGATCTGAT
ATATTCCAACATGATCACGCTTGATCTCGACATATCTCTACCACTGACTA
TGTGTTGGTCCTCGAAATCCATTTATTTTCTCAAATGTTCACTGTTGACT
TTGTTGCATAACAAGTCGTCTTACTCGTAGTCATGGAAGTGTGTGGAGGC
CTACTACTATTGATGTAACAACACATGAACGTGCACGGGGGTATGCATGA
TTAGGGTATAGAAAAAAACCTGTTTTTATGAATTGAAATAAATGTCGAAG
TATTGAACAGTACGTATGAATATTGATATGATTGCCTTTGATAATAGCAA
AGGGAAGTACCTTCAGAGTCACTCCACTACGATATAGGATACCATACATT
GTATTTATGTTGGTATTTTTTCCAAAAACTTACGTTGCCAATTAATTGAA
AACAAATCCCCCAATAGAGCGATCCTACCTTCAGAGGAAATCCTTTCTAG
GGCGTTTTTTTTGTACTTAGAGATTTAATAAGCGCCCACCTGATACCCAA
TTTTCCATGCCTGAAATGCCTCCATTCCTCTTAAGGAAGCTGTGCCTGTA
AAAGTGGAGGGAAACGTCCGTCCACACAAATCCAACCTCCAGGGAGTTAG
AAGCACATTTGTATCTGAACGTAGTCATAGGAACCCCAAATACTCAATGA
TACCCCCCCCAAAATGGGATGATTCAAAACATCTTTCTCCACTATAGAAT
GTTTGCAGGGTTGATACATGGCTACCCATGATAGAGTTTCGATTTGAACG
AAAAACACTCTTCGAGCATAAAAATAGGGTTCTAGATTTAGAAACCGATT
GAACAGAATATTTTGTGGGTCACTTAGTGGAAAAGAAACTATACACTGAC
GCAAAGTTGAGGATTTGTATTTTAGGGTTCCTCAGCATGAAAGGTTGTCA
AGTGGGATCCCCTCTTGCGAATTTCATGCGTTAGAATTTTCCCCCAGGAT
TTGCAGACACGAGAATATTTGTTTTCCAGCAACTGCAGGCCACCCTACCT
CAAGAGCCCACACTCTGGATGTTTGCTTCCCTCAGGAGAACATTGGAATC
AGAGGCCGTCAGAGCACATTTATTGATGGCAGTGACAATAGCAGTCAACG
AGGGGGATCATTCTCTTCGGATGAAGCCACTAGGTGAGCATGAATGATTC
TCAACTCAGTTTCCTTACCTTACCCTTCCTCCCCTTCTCTACCTCCTTTT
CGTATCCATACCTTCAAAATACATACATTATGCTTCGTTTTTGTGGTTGA
TAAATCAATACAAACATGTGGGAGGGGACAGAGATACCAAATGGACTATT
TAATTTCGACAGAGAAATTCGCCCTGCTTCTACCCAGGAAGAAAATTGGG
ATATGGCAGTTTATATGACAAGCGCAAATGTTGACAACCACCACGACACA
ATTGTTGCCGTAACCTCATTCAGAAATTACATCATTTGAAGTGGATGACG
ATAAGGTACTCTCTCATTAACCAATCTTTGTTGCATTTTTGAATAAATAA
CAATGAACTGGAGTCGTTCCCTATTTTTCTTTGCGTGGCCCAACTACTCT
CGAACGATGTGTACCACGAACTTCAACTAAATATTAACACTGTGGTCACA
GGGGAAAGGGCAGAGTCACGGATGGTGGACCCAGAGTGGATGGGAATGGG
TTTTGTCCTTCCCAGGAGCATAAAATGGGACAGTTTTTCAATGGGGCTAA
CAGGCAATCCCCCACAGGATCAACTCTCGGATGTCCTACGTACGTGAAGG
GAAGAGTTGTTCCCCAGGGCATTAAAGTGAGGAAGACTGGAGAAATTGAA
GGAGAAGGGGTAAAAGGGAGTGCTGTAGGACGGGTTGATCTATCGAGGCC
CATTAATAATCAGGGGAGCCTCAGCTGGGAGCAGTCCAAGCATCCGGAGG
TTGCTCGAGCTGGTACAACAGGCAGAACAGGCATTACAGGTGGAGGTGTT
GAGAGAAATATGAAAATGCGATCTAAGGAGATGACTAAGCTGGGATTGTG
GAACAGAGGAGAGAACAAGTCTTTAGAAAATGAGTTAGCAATTTCAAAGC
ATCTAACCGATGTTCACTCCTCCCACTCCAGTGGCATCAGTGAGGCGGAG
AGAGTAAATGATGTGATTCTGGAGGGGGAGGATGAGGAAAAGGAATGTTC
AGGAGTGGAGGGACAGGATGTGGAGAGTAGGCCAGGGGCAAGCAAGAGAC
GTCGTATGAGGTGCAGGCCACGGGCCAGGGTGTGTAGTGTTGGGGCAGAG
CATATGGGAATGGACACTGTGTCCGAGCATGGCAGCCCTAGGCAGGCACT
CCCTTCCACAGAGCACGGAGAGGATAGAATATACCTTGATGATGATGTCC
CGAATCAAAGCACCCTTCGCAAGGATGTGGACGGTAATTTCGTGGAAGAT
TGGCATTAGAACATTAAGGTTTGCTGAAGGCATGAAGGCAGATAGAGATG
GAGAGATAGGGTTTACATACACTTTTTTTTTACCGAAAATCAAGTTTTTA
TGAGACATGTTCTCTCATTTGTCACCTTGAAGAGGTATGGATACTTAATG
AGAAAGTTAGGGGAGACGAGAAGACACAGTAAGACGACGAGACATACTAG
TCGCAGAATTGGGGATGGGATTGCAGGAAGGAATTTGTGATGAGGTATGC
CCAAAAGCGTGACAAGGATGCAGGCTATGGAAATCCATTTGACTACCCCT
TGCTCAAGTAAGTTGTGAGTGGCAATGCTGTGTTTTGTATCATCTGACTA
TCCAGTATAGTGGTAACTTCTACTAGGATTTTCCACCATTCATTGTCTTT
CTGCAAGTGTTCTGGACACACTCGTCTTGCTGTACATTTCTGGTCACCTC
TATATTTGGGGAGTAGGTCTCAATACATGTGGTAGTAGCTAGCACTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig930:8479..12876+

>mRNA_C-tenellus_contig930.6.1 ID=mRNA_C-tenellus_contig930.6.1|Name=mRNA_C-tenellus_contig930.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=885bp|location=Sequence derived from alignment at C-tenellus_contig930:8479..12876+ (Choristocarpus tenellus KU2346)
ATGGGAGATGATGAACATCACGTGGGTTCGCCGTTCTTTCGGGAAAGTAG
TGGGCGGAATGGGGGGCTTAAATCAGTTGAAGTGGATACACGGAGGCTGG
GGACGAGGGAAACAGGATCCGAAACGGAACCTGCCTCACGTGAGATGGCT
TCGGGCCTGGAAGGAGAAGGGAGTGAAGGGGAGGGGCAAGCAGGAATTAC
AAGTGGGATAGAATCGATACTAAAGCAAGGCAGCAACCTGGAGAGTAATG
GGGAAGGAGAAGAGACTGGTGAAGTAGGTATGATGCAGGGGAAAGTCCGA
CATAAGGAGCTCCAGCAACAACTGAAGAAATTTTCTGACAAGGCTAATGA
AGCTTTTCACAGTCTTACCAACCGATTCATCGAGGCCAATACCTCTCTTC
AACAAATTCAAAGTGACCAGGAAAATATGCTATCGGAAGAGAAGACTACC
TCCAACATATTAATGGAACAAAGAGTTCGAGTCAAGGAGGCTGCAGCACG
ACTACAGACCGACCTACTAGAAGCCCTCGAGTTTTCATCCCCCGAGAACA
TTGGAATCAGAGGCCGTCAGAGCACATTTATTGATGGCAGTGACAATAGC
AGTCAACGAGGGGGATCATTCTCTTCGGATGAAGCCACTAGGGGAAAGGG
CAGAGTCACGGATGGTGGACCCAGAGTGGATGGGAATGGGTTTTGTCCTT
CCCAGGAGCATAAAATGGGACAGTTTTTCAATGGGGCTAACAGGCAATCC
CCCACAGGATCAACTCTCGGATGTCCTACGTACGTGAAGGGAAGAGTTGT
TCCCCAGGGCATTAAAGTGAGGAAGACTGGAGAAATTGAAGGAGAAGGGG
TAAAAGGGAGTGCTGTAGGACGGTGGCATCAGTGA
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