mRNA_C-tenellus_contig9198.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9198.1.1
Unique NamemRNA_C-tenellus_contig9198.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A7J6TR44_PEROL (RING-type domain-containing protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6TR44_PEROL)

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   10 DETLCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLRDCPLCRAVIDERLNIF 174
            DE+LC VCQ   R+VVL+PCRH+C+C+ C++  G+E    CPLCR  I ERL +F
Sbjct:  463 DESLCVVCQTELRTVVLMPCRHMCVCTRCSERLGSE----CPLCRDHIKERLKVF 513
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BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A7J6L9U4_PERCH (ATP-dependent RNA helicase dhx8 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6L9U4_PERCH)

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   10 DETLCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLRDCPLCRAVIDERLNIF 174
            DE+LC VCQ   R+VVL+PCRH+C+C+ C++  G+E    CPLCR  I ERL +F
Sbjct:  466 DESLCVVCQSELRTVVLMPCRHMCVCTGCSERLGSE----CPLCRDHIKERLKVF 516
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BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A7J6QNH5_PEROL (Importin alpha subunit (Karyopherin alpha subunit) (Serine-rich RNA polymerase I suppressor protein) (Fragment) n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QNH5_PEROL)

HSP 1 Score: 67.4 bits (163), Expect = 1.220e-11
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   10 DETLCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLRDCPLCRAVIDERLNIF 174
            DE+LC VCQ   R+VVL+PCRH+C+C+ C++  G+E    CPLCR  I ERL +F
Sbjct:  836 DESLCVVCQTELRTVVLMPCRHMCVCTRCSERLGSE----CPLCRDHIKERLKVF 886
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BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: UPI00085417B8 (RING finger protein 26 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI00085417B8)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-11
Identity = 27/53 (50.94%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   22 CCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPL--RDCPLCRAVIDERLNIF 174
            C +CQD+P+S++LLPCRHLCLC+ C +    +P+  R+CPLCR +I + LN++
Sbjct:  388 CVICQDQPKSILLLPCRHLCLCARCTNILQQQPILQRNCPLCRQMILQTLNVY 440
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BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A1B0G6K1_GLOMM (RING-type domain-containing protein n=1 Tax=Glossina morsitans morsitans TaxID=37546 RepID=A0A1B0G6K1_GLOMM)

HSP 1 Score: 65.9 bits (159), Expect = 2.970e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   13 ETLCCVCQDRPRSVVLLPCRHLCLCSTCADEA-GAEPLRDCPLCRAVIDERLNIF 174
            E  C VCQDR +SVVLLPCRHLCLC  CA+     +  R+CPLCRA I + L+++
Sbjct:  243 ENCCVVCQDRVKSVVLLPCRHLCLCKDCANYLLFIDQQRNCPLCRAFITDSLSVY 297
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BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A7J6RPE2_PEROL (RING-type domain-containing protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RPE2_PEROL)

HSP 1 Score: 66.2 bits (160), Expect = 2.970e-11
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   10 DETLCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLRDCPLCRAVIDERLNIF 174
            D++LC VCQ   R+VVL+PCRH+C+C+ C++  G+E    CPLCR  I ERL +F
Sbjct:  354 DDSLCVVCQTELRTVVLMPCRHMCVCTRCSERLGSE----CPLCRDHIKERLKVF 404
[Close]
BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A7S0ATP2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATP2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.920e-11
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   10 DETLCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLRDCPLCRAVIDERLNIF 174
            +E LC +C++  + VVLLPC+HLCLCS C+     E + DCP+CR  I +++ +F
Sbjct:   72 EENLCIICEEATKRVVLLPCKHLCLCSVCSK---LEQITDCPMCRTKISDKMEVF 123
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BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: H9KV16_MOUSE (E3 ubiquitin-protein ligase RNF26 (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=H9KV16_MOUSE)

HSP 1 Score: 60.8 bits (146), Expect = 5.330e-11
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   22 CCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPL--RDCPLCRAVIDERLNIF 174
            C +CQD+ ++V+LLPCRHLCLC  C +     P+  R+CPLCR  I + LN++
Sbjct:   11 CVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRSILQTLNVY 63
[Close]
BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A812S5N9_SYMMI (Rnf26 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S5N9_SYMMI)

HSP 1 Score: 64.7 bits (156), Expect = 5.490e-11
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   10 DET---LCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLRDCPLCRAVIDERLNIF 174
            DET   LCCVC+D  ++V+LLPC+HLCLC  C++      +  CP+CR  + + L ++
Sbjct:  193 DETENALCCVCRDNNKTVLLLPCKHLCLCEVCSEHISTRRMTSCPVCRQAVSDALRVY 250
[Close]
BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Match: A0A7S3HRK6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRK6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.290e-11
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   10 DETLCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLR--------------DCPLCRAVIDERL 165
            D+ LCC+C + P+SV+L+PCRHLC+C  C++     PLR               CP+CRA +DE L
Sbjct:  201 DQNLCCICLEHPKSVLLMPCRHLCVCQVCSEGGPESPLRASRPRQEKRVKSIKSCPVCRAAVDECL 266
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9198.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7J6TR44_PEROL1.200e-1154.55RING-type domain-containing protein n=5 Tax=Perkin... [more]
A0A7J6L9U4_PERCH1.200e-1154.55ATP-dependent RNA helicase dhx8 n=1 Tax=Perkinsus ... [more]
A0A7J6QNH5_PEROL1.220e-1154.55Importin alpha subunit (Karyopherin alpha subunit)... [more]
UPI00085417B81.620e-1150.94RING finger protein 26 n=1 Tax=Nanorana parkeri Ta... [more]
A0A1B0G6K1_GLOMM2.970e-1156.36RING-type domain-containing protein n=1 Tax=Glossi... [more]
A0A7J6RPE2_PEROL2.970e-1152.73RING-type domain-containing protein n=2 Tax=Perkin... [more]
A0A7S0ATP2_9STRA3.920e-1145.45Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
H9KV16_MOUSE5.330e-1149.06E3 ubiquitin-protein ligase RNF26 (Fragment) n=1 T... [more]
A0A812S5N9_SYMMI5.490e-1143.10Rnf26 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3HRK6_9STRA6.290e-1142.42Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9198contigC-tenellus_contig9198:3053..3232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog79684.XP_005353421.1
Preferred nameRNF26
PFAMszf-C3HC4_3
Model size180
Max annot lvl33208|Metazoa
KEGG koko:K15693
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0001817,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002831,GO:0002832,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006807,GO:0006996,GO:0007032,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0031347,GO:0031348,GO:0031984,GO:0032101,GO:0032102,GO:0032446,GO:0032479,GO:0033036,GO:0036211,GO:0042175,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048519,GO:0048583,GO:0048585,GO:0050687,GO:0050688,GO:0050789,GO:0051179,GO:0051239,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0080134,GO:0098827,GO:0140096,GO:1901564,GO:1905719
Exons1
Evalue6.08e-11
EggNOG OGsKOG4265@1|root,KOG4265@2759|Eukaryota,38NR3@33154|Opisthokonta,3BJTP@33208|Metazoa,3D3XI@33213|Bilateria,480SP@7711|Chordata,496HJ@7742|Vertebrata,3J8UT@40674|Mammalia,35BQF@314146|Euarchontoglires,4Q10P@9989|Rodentia
DescriptionZinc finger, C3HC4 type (RING finger)
Cds size180
COG categoryO
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790153.8320363-CDS-C-tenellus_contig9198:3052..32321680790153.8320363-CDS-C-tenellus_contig9198:3052..3232Choristocarpus tenellus KU2346CDSC-tenellus_contig9198 3053..3232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9198.1.1prot_C-tenellus_contig9198.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9198 3053..3232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9198.1.1

>prot_C-tenellus_contig9198.1.1 ID=prot_C-tenellus_contig9198.1.1|Name=mRNA_C-tenellus_contig9198.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=60bp
AHPDETLCCVCQDRPRSVVLLPCRHLCLCSTCADEAGAEPLRDCPLCRAV
IDERLNIFP*
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mRNA from alignment at C-tenellus_contig9198:3053..3232-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9198.1.1 ID=mRNA_C-tenellus_contig9198.1.1|Name=mRNA_C-tenellus_contig9198.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=180bp|location=Sequence derived from alignment at C-tenellus_contig9198:3053..3232- (Choristocarpus tenellus KU2346)
GCCCATCCTGATGAGACGCTGTGCTGTGTTTGTCAGGACCGTCCCCGCTC
TGTTGTGCTTCTTCCCTGCCGACATCTGTGTCTCTGTAGTACATGTGCAG
ATGAGGCAGGGGCGGAGCCATTGAGGGATTGCCCGTTGTGTCGGGCAGTA
ATTGATGAGAGACTAAATATCTTTCCTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9198:3053..3232-

>mRNA_C-tenellus_contig9198.1.1 ID=mRNA_C-tenellus_contig9198.1.1|Name=mRNA_C-tenellus_contig9198.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=180bp|location=Sequence derived from alignment at C-tenellus_contig9198:3053..3232- (Choristocarpus tenellus KU2346)
GCCCATCCTGATGAGACGCTGTGCTGTGTTTGTCAGGACCGTCCCCGCTC
TGTTGTGCTTCTTCCCTGCCGACATCTGTGTCTCTGTAGTACATGTGCAG
ATGAGGCAGGGGCGGAGCCATTGAGGGATTGCCCGTTGTGTCGGGCAGTA
ATTGATGAGAGACTAAATATCTTTCCTTAG
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