mRNA_C-tenellus_contig9183.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9183.1.1
Unique NamemRNA_C-tenellus_contig9183.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9183.1.1 vs. uniprot
Match: A0A6H5JKB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKB5_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.950e-49
Identity = 85/122 (69.67%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:  340 KVDTIVLAKCRRKSQTMWPARVCSRREVLERLKEAPASDDGVDPRNECLVMFLCEGGHHVMDWVSPGVMRPYQSHASAYPYKKRAYVGTARLQPDFAAAEAWADGLKSIVKSIRAEVRAARR 705
            ++DTIVLAKCRRKSQTMWPAR+CS+RE+LER++    +D+GVDPR+ CLV+FLCEGGHHV DWV+PG MRPY  HA+AYPYKK+AY GTARLQPDF AAEAW + +K++V + RAE R  RR
Sbjct:  594 RIDTIVLAKCRRKSQTMWPARLCSKREMLERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQPDFTAAEAWGEEMKALVTARRAEARTLRR 715
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BLAST of mRNA_C-tenellus_contig9183.1.1 vs. uniprot
Match: D7G062_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G062_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 2.520e-26
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:  421 VLERLKEAPASDDGVDPRNECLVMFLCEGGHHVMDWVSPGVMRPYQSHASAYPYKKRAYVGTARLQ 618
            +LER++    +D+GVDPR+ CLV+FLCEGGHHV DWV+PG MRPY  HA+AYPYKK+AY GTARLQ
Sbjct:    1 MLERMENPDPADEGVDPRHMCLVVFLCEGGHHVTDWVAPGSMRPYLRHAAAYPYKKKAYAGTARLQ 66
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKB5_9PHAE1.950e-4969.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G062_ECTSI2.520e-2669.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9183contigC-tenellus_contig9183:184..4176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size928
Hectar predicted targeting categoryother localisation
Exons5
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790151.9677637-CDS-C-tenellus_contig9183:183..2631680790151.9677637-CDS-C-tenellus_contig9183:183..263Choristocarpus tenellus KU2346CDSC-tenellus_contig9183 184..263 +
1680790152.4332442-CDS-C-tenellus_contig9183:2212..23541680790152.4332442-CDS-C-tenellus_contig9183:2212..2354Choristocarpus tenellus KU2346CDSC-tenellus_contig9183 2213..2354 +
1680790152.4453573-CDS-C-tenellus_contig9183:2562..27601680790152.4453573-CDS-C-tenellus_contig9183:2562..2760Choristocarpus tenellus KU2346CDSC-tenellus_contig9183 2563..2760 +
1680790152.4593499-CDS-C-tenellus_contig9183:3271..34691680790152.4593499-CDS-C-tenellus_contig9183:3271..3469Choristocarpus tenellus KU2346CDSC-tenellus_contig9183 3272..3469 +
1680790152.477224-CDS-C-tenellus_contig9183:3867..41761680790152.477224-CDS-C-tenellus_contig9183:3867..4176Choristocarpus tenellus KU2346CDSC-tenellus_contig9183 3868..4176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9183.1.1prot_C-tenellus_contig9183.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9183 184..4176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9183.1.1

>prot_C-tenellus_contig9183.1.1 ID=prot_C-tenellus_contig9183.1.1|Name=mRNA_C-tenellus_contig9183.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=309bp
EGEGEEEEDAGEKGAIATRLGGRTRKASAKYQEFKQVQRKSVRQSGEPLH
SRGPSRLSNRATSGLSGVGRSAVQRSIVKRSVGNGAVALSGAGAGAGASA
LVQRGVAGEPWEVKVDTIVLAKCRRKSQTMWPARVCSRREVLERLKEAPA
SDDGVDPRNECLVMFLCEGGHHVMDWVSPGVMRPYQSHASAYPYKKRAYV
GTARLQPDFAAAEAWADGLKSIVKSIRAEVRAARRLAKANAASGPEKEAL
LLKAAENQDGAITPAPLAVKEEKEGTALVVAGERSGAGDCDIAMAVTGKK
EDVEGGVAG
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mRNA from alignment at C-tenellus_contig9183:184..4176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9183.1.1 ID=mRNA_C-tenellus_contig9183.1.1|Name=mRNA_C-tenellus_contig9183.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3993bp|location=Sequence derived from alignment at C-tenellus_contig9183:184..4176+ (Choristocarpus tenellus KU2346)
GAAGGGGAGGGAGAGGAAGAAGAAGATGCCGGGGAGAAGGGGGCTATTGC
AACACGGCTGGGGGGACGCACACGAAAAGCGTGAGTCAGGACTTTCAGGT
TGAACAGGGGAGAATGCGGGGGTGGATTGGAACGGATTTGATGAAAAAGG
CTTAGGGACTTGGCCCATGTGTATTGAAGGGGGATTTGATGAAAAGAGTG
AATTTGTCAGGTTAGGGTTAGAGTTAGGGTTAGGCTTAGGGTTGAGGTTG
GAATGGGAGGAAGTAACTTGTTTGTTTCAAGTTTAGTTTGTTGTCGACAG
GTTGTAGTAAGGAGCTTACCTTGCAACAATTCTATTTTTTTTTTTTTTTT
TCCGTAACCTGGTTGCTATAGTCGGCGTTACGATACTGCTGCGAGCCATA
TCGCTACGATTTAATCAGATTGAAGATAATAATTGACTGAAAAAAATTGA
TTGTGTAGCTTCAATGGGTTGTTATTTCCTCTTGTGTCTGTGTGTTATAC
TATACACCCAGCTGAAATTTCCTTTGGTGCTTGGCGTCTTGCGCTTCTCG
CCTTTTGCCCTGCCGACATGATCTTTTTGTTCTAATCTATCTCACTAAAA
CCTCTTGAGTCATTTTCATATTTTACTTGCCAAAAAAGCATTTTGATTGG
CAACACCAACCGAAGGAATAGTGATTGTGAATACGTGTGGATTGTCATCC
TCTTATTTTTTATTATTGTTTATTGTGATGTAAACGAGTGCATTAAACTG
CTAGCAATTGTTTAGTGTGTGTGTGTGTGTTTTATTTTTATTTTTGAACA
GCGATGCAACAACCACTGCGATGGAAACCACCTGTTTCTTAGCTTGATCA
ATCACCTCCACCTTGGGACATGTTTTTCATTAGTGGCACTAGCATACAAA
TATCTCTAACCCTAACAATGTAACAGAAGTGGATATCATGGATGAATATA
AACATTGAACCGAGATCGAAGCGTGCTGTTACTGATTCTGTTTGTTGCGT
GTGAAATTATTTTTTCTGTTTTTTTGGTGACCTGTCTGTGCTCATGTGAA
GGTCTCTCCCCCAAGCTCGAAGGCATGTGTGCATTCATAGACATAGTTGA
TGTACATGCAAATACAAGCTATTTTTTCTTATTATTAATGTACAAAATGT
TGTGATAACAAGACCTGGAAAAATTCCCATCCATAGATCTATTTTTGATA
GCAGCTGTGTGTAGTATATGCATCCCTTGAATGCTTCATCCTGTTTTGTA
CCCTTTTTTTTATGGTCTTGTGTGATTTCCATGAAAAACTGATGCACTAA
GTTATCTTCAGAAATCAATTGAGGGAGTTCTTCAACACAGTTTGCGGGTG
CCCCCTCTCTCTCCACGAAAGCCCCCCCCTGCTAGTTGTGAGAAGCAATG
TATTTTTATATACTACGGAGTAAACCTACTATGTAGTGAATATGAAAAAA
TCGCTTTGCAACTTATGTGAAAAAAGAAGGATGAGAAATCATTTCAGTTC
CAAGCACTGTGATTATGTGAGATGATTACATTTTCGGGATGTATTCAGTA
TTGTTCAGTAGGGGAGTGGGAGATCAGATAGTGATACCATCGATTTTTTT
GTTCCATTTTTATGAAAGTAGATTTTTTTTTTCCAACAAGCATTTTAGTA
GTGATTATATTTCCATGAAATAGGCTTGTGGCTTCAATAGTGGGGAATCA
CATCCATCCTCAGAGAGATTGTGGACTGTGCATATCTTGACAATAAACAG
TCACTTCATCTCAGACTGTATAACCCTCTAAACCATGGTTTGAATCCGTA
TTAGCTACATTGTGTTACACTCCTGCACAAACCCTCAACTCAAATAGAGG
AGTGCAAGAGAGCCCTGGCTGAGTATAGAGATTGGACTGCACATTGTGAC
AACTAAGTCAAGACTCTTCCCCACCCCCCACCCCCCACCGCCCATAACTA
TTGAAAATAACTTTAACCCTTGAAGCCCTATCCCTAACCTATCCCTAACC
TATGCCTAACCCTAACCATATACGTGAAGGAGCGCAAAGTATCAAGAGTT
CAAGCAGGTGCAGCGTAAATCTGTCCGGCAAAGTGGTGAGCCCCTGCACT
CGAGGGGACCATCCAGACTATCCAATAGGGCTACATCTGGCCTGTCTGGG
GTTGGACGTTCTGCAGTGCAGGTGTGATGTGGTACTTGGTTATTGGGGAG
GGCAAGTGAGGTTTGAACTGTACTTTGGGTGGTGGCCTTGTAGGTTCCCC
ATGATTTTTGTTTTGATTACAGTGTTGATAATTTATCTTAGGGTGCTTTT
GTACATGTATCCCCTAACCCTAACCCTAAACACTCAATCTTGGTTTGACT
CGCTAACCTTAACCATAATGGTTGAGCAGCGCTCAATTGTGAAGCGTTCA
GTGGGGAACGGAGCAGTTGCATTGTCTGGGGCTGGGGCAGGGGCAGGGGC
CTCAGCTCTAGTGCAGAGAGGGGTTGCTGGTGAACCTTGGGAAGTAAAGG
TGGACACAATTGTGCTGGCCAAGTGCAGGAGGAAGAGCCAGACCATGTGG
CCAGCACGTGTCTGTTCTAGGCGGGAGGTGGGTCCAGTGACTTCTTGGTC
TGCATGAGGGAGTTGCATTTCCTCACACGGTGGAGGCGGTTTGAAAGTGA
TGAATGTTCATGCTTCCAAGTGTACGTATTTTGAGGTTTATGTTTCTGAA
GTGTTTTCCTACATCTAAATATTGCTTACGTTCATTTACCCATATTTCTC
GGCACAAGTTTGTGCACATGTACTATAGCGCTAGGTGCCTGATGTTGGTC
AAACGTGCTCAAGAGGATTGATGACCAATCCCCCGTACATTTAAATAATT
AAATTATGATGTTAATTGAAGTAAATTAGGGTACGTGCAACAAAGAATGG
GCGGGGAGGTTTTCGAGCGCCGGACTTCATTTTTTGTTTTTACAGATGTG
CTGACCCTGAACCTTTCCTGAACCTTTCCTGAACCTTTCCTGAACCTTTA
TTATTTGGCGACCCTTCAATCCCCTACTGGCGAATCCGAATCCTGGTTCT
GAATCTTTGAATGTTTTGCAATAACAAAAAACGAAAAGGTATTGGAACGC
CTGAAGGAGGCGCCTGCATCTGATGATGGAGTGGACCCACGCAATGAGTG
CTTAGTCATGTTCCTGTGTGAGGGTGGTCACCACGTCATGGACTGGGTAT
CTCCCGGGGTGATGCGGCCCTACCAAAGTCATGCCTCTGCATACCCTTAC
AAGAAGAGGGCGTATGTGGGAACTGCTCGACTGCAGGTACACAATATATA
TGTGTATATAAATACGTATACATTACTACATTTTCAACCCTAACCCTAAC
CCTAACCCTAACCCTAACCTTAACCTAAATCTTAGTCCTACAGAGAACGC
AAGAAAACTGTTCTTTGTAGGGACTGCTTGACAAATTGGAGGGTATGCAT
GATCGGTGTTTTTGACACAGATCAAACTGAACACTGCAGTAATAAGAAAC
TGCAATGTTGATTGCTTCTTGACTCTCACATTTTGCAACCCTGGCCCTAT
CCCTTACTTACCCTAAAAGGAGACTCATGTTTGATAACTCATGTTTGATG
CCAATTACTTTTTGTTACTCTTATCTATGCCATAGAAATACTAATCCTGC
CCTTCCTCTCCTCTCCACCCCCAAAACGCAACAGCCTGATTTTGCTGCTG
CAGAGGCATGGGCAGATGGTCTCAAGTCCATTGTGAAGTCTATTCGTGCG
GAAGTGAGAGCTGCGCGGCGCCTTGCAAAGGCCAATGCAGCGTCCGGACC
TGAGAAGGAGGCCCTCCTACTCAAGGCTGCTGAAAACCAGGATGGTGCAA
TAACGCCTGCACCACTTGCAGTGAAGGAGGAGAAGGAGGGGACTGCGCTT
GTTGTTGCTGGGGAAAGGTCTGGAGCTGGCGATTGTGATATTGCCATGGC
AGTTACAGGGAAGAAGGAGGACGTGGAGGGGGGTGTGGCTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9183:184..4176+

>mRNA_C-tenellus_contig9183.1.1 ID=mRNA_C-tenellus_contig9183.1.1|Name=mRNA_C-tenellus_contig9183.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=927bp|location=Sequence derived from alignment at C-tenellus_contig9183:184..4176+ (Choristocarpus tenellus KU2346)
GAAGGGGAGGGAGAGGAAGAAGAAGATGCCGGGGAGAAGGGGGCTATTGC
AACACGGCTGGGGGGACGCACACGAAAAGCGAGCGCAAAGTATCAAGAGT
TCAAGCAGGTGCAGCGTAAATCTGTCCGGCAAAGTGGTGAGCCCCTGCAC
TCGAGGGGACCATCCAGACTATCCAATAGGGCTACATCTGGCCTGTCTGG
GGTTGGACGTTCTGCAGTGCAGCGCTCAATTGTGAAGCGTTCAGTGGGGA
ACGGAGCAGTTGCATTGTCTGGGGCTGGGGCAGGGGCAGGGGCCTCAGCT
CTAGTGCAGAGAGGGGTTGCTGGTGAACCTTGGGAAGTAAAGGTGGACAC
AATTGTGCTGGCCAAGTGCAGGAGGAAGAGCCAGACCATGTGGCCAGCAC
GTGTCTGTTCTAGGCGGGAGGTATTGGAACGCCTGAAGGAGGCGCCTGCA
TCTGATGATGGAGTGGACCCACGCAATGAGTGCTTAGTCATGTTCCTGTG
TGAGGGTGGTCACCACGTCATGGACTGGGTATCTCCCGGGGTGATGCGGC
CCTACCAAAGTCATGCCTCTGCATACCCTTACAAGAAGAGGGCGTATGTG
GGAACTGCTCGACTGCAGCCTGATTTTGCTGCTGCAGAGGCATGGGCAGA
TGGTCTCAAGTCCATTGTGAAGTCTATTCGTGCGGAAGTGAGAGCTGCGC
GGCGCCTTGCAAAGGCCAATGCAGCGTCCGGACCTGAGAAGGAGGCCCTC
CTACTCAAGGCTGCTGAAAACCAGGATGGTGCAATAACGCCTGCACCACT
TGCAGTGAAGGAGGAGAAGGAGGGGACTGCGCTTGTTGTTGCTGGGGAAA
GGTCTGGAGCTGGCGATTGTGATATTGCCATGGCAGTTACAGGGAAGAAG
GAGGACGTGGAGGGGGGTGTGGCTGGG
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