mRNA_C-tenellus_contig8298.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8298.1.1
Unique NamemRNA_C-tenellus_contig8298.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8298.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8298contigC-tenellus_contig8298:1589..2256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size668
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790094.6045573-UTR-C-tenellus_contig8298:1588..17721680790094.6045573-UTR-C-tenellus_contig8298:1588..1772Choristocarpus tenellus KU2346UTRC-tenellus_contig8298 1589..1772 +
1680790094.6228046-UTR-C-tenellus_contig8298:2120..22561680790094.6228046-UTR-C-tenellus_contig8298:2120..2256Choristocarpus tenellus KU2346UTRC-tenellus_contig8298 2121..2256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790094.6137612-CDS-C-tenellus_contig8298:1772..21201680790094.6137612-CDS-C-tenellus_contig8298:1772..2120Choristocarpus tenellus KU2346CDSC-tenellus_contig8298 1773..2120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8298.1.1prot_C-tenellus_contig8298.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8298 1773..2120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8298.1.1

>prot_C-tenellus_contig8298.1.1 ID=prot_C-tenellus_contig8298.1.1|Name=mRNA_C-tenellus_contig8298.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=116bp
MWLLTSPDSVHDTFLLHGRGFRLRRRCIDLPEDSYYRSEILVRNGQQFRV
LVFFYNLTYYTSGQVVDVDSMLRLAYRGFFNLGGVLQYVFHTIFAFVCYV
HLSCSVPVQWIVYQD*
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mRNA from alignment at C-tenellus_contig8298:1589..2256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8298.1.1 ID=mRNA_C-tenellus_contig8298.1.1|Name=mRNA_C-tenellus_contig8298.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=668bp|location=Sequence derived from alignment at C-tenellus_contig8298:1589..2256+ (Choristocarpus tenellus KU2346)
CTCCAGGTTGGCCACAGAGCTCAGAATCGTGCTACAGGTCAAGTTTGAAG
TTTGTATTCTAAGGCTGAGTTTGTGATTCTGTTTGTATGTGTGTGGGTAT
GGGAGGAGTACTTATGGTGTCTCGAGGATGGTGTGAGTGCTTGCTCTCTC
TTTGGATGAAATGTGTGTGTACATGCCCTTATAGATGTGGTTGCTCACAT
CTCCTGATAGTGTCCATGATACCTTCTTGTTGCATGGGAGAGGATTTCGG
TTGAGGAGAAGATGCATAGATCTTCCAGAAGATAGTTACTACAGATCAGA
AATTTTAGTGAGAAATGGGCAACAGTTTCGAGTTCTTGTGTTTTTTTATA
ACTTAACATACTATACGAGTGGGCAGGTTGTAGATGTGGATAGCATGTTA
AGGTTGGCATATAGAGGTTTCTTTAACCTAGGAGGTGTGTTACAGTATGT
GTTTCATACAATCTTTGCTTTTGTTTGTTACGTACACTTGTCCTGCTCCG
TACCTGTACAGTGGATAGTCTACCAAGACTAACTTGCCCACCCCATCATA
TCTGAATCAAGAGCGGGTTGGACTTTAGTTTAATATTTTGTGCTCAATAT
GAGAGGTGAATTCCTAATATTTGAACTGAACACGTCGTAGGAGTTGAAAA
TATGTACATAGATATTTC
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Coding sequence (CDS) from alignment at C-tenellus_contig8298:1589..2256+

>mRNA_C-tenellus_contig8298.1.1 ID=mRNA_C-tenellus_contig8298.1.1|Name=mRNA_C-tenellus_contig8298.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=348bp|location=Sequence derived from alignment at C-tenellus_contig8298:1589..2256+ (Choristocarpus tenellus KU2346)
ATGTGGTTGCTCACATCTCCTGATAGTGTCCATGATACCTTCTTGTTGCA
TGGGAGAGGATTTCGGTTGAGGAGAAGATGCATAGATCTTCCAGAAGATA
GTTACTACAGATCAGAAATTTTAGTGAGAAATGGGCAACAGTTTCGAGTT
CTTGTGTTTTTTTATAACTTAACATACTATACGAGTGGGCAGGTTGTAGA
TGTGGATAGCATGTTAAGGTTGGCATATAGAGGTTTCTTTAACCTAGGAG
GTGTGTTACAGTATGTGTTTCATACAATCTTTGCTTTTGTTTGTTACGTA
CACTTGTCCTGCTCCGTACCTGTACAGTGGATAGTCTACCAAGACTAA
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