mRNA_C-tenellus_contig8292.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8292.1.1
Unique NamemRNA_C-tenellus_contig8292.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: D7FH25_ECTSI (Multicopper oxidase, type 1 is implicated in celullar iron transport n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH25_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 7.760e-27
Identity = 67/113 (59.29%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  130 GGCMLLTLARDGVYL-PSPRRQPS---VLMGPGSRADLAVQCKGPGMFHLASS-GGGD--------MAYLGTRTNLFEGTLAFISVDGSALDMDLPKELPGPLNMGRLLQDLR 429
            GGC LLTLARDGVYL P PR Q     V++ PGSRADLAV+C   G++ LASS GGGD         +YLG  T++FEGTLAF+ V G ALDMDLP+E P      RLLQDLR
Sbjct:  114 GGCTLLTLARDGVYLRPVPRLQGGGGHVVIAPGSRADLAVRCDEAGVYRLASSKGGGDDEGEEGSIRSYLGQATDVFEGTLAFVDVGGDALDMDLPEESPAAAGSDRLLQDLR 226          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: A0A835ZAK4_9STRA (Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.730e-20
Identity = 58/130 (44.62%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCKGPGMFHLASSGGGDMA------YLGTRTNLFEGTLAFISVDGSALD----MDLPKELP 390
            NGQFQP++ +  GEAVRLR+VHAG  +  N     C L  +ARDG Y   PR  P VLM PGSRADL + C+  G F L S+   D+       YLG ++ +  GTLAF++  G  +     M LP  LP
Sbjct:  216 NGQFQPLIEVETGEAVRLRVVHAG--EWTNADSAVCALHVIARDGAYHREPRTLPGVLMSPGSRADLVITCRSSGTFRLHSA---DLPNEDVDRYLGGKSRVRVGTLAFVTARGPRVRREEVMPLPPTLP 340          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: A0A3M6VS59_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VS59_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 2.610e-17
Identity = 47/141 (33.33%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCKGPGMFHLASSGGGDMA-------------YLGTRTNLFEGTLAFISVDGSALDMDL------PKELPGP 396
            NGQ+ P +++ P E V LR++HAG      + + GC+++  + DG+YLP PRR  +V++ PG+R DL + C+       ++ GG +M              ++G  ++L+ G LAF+ V G +L   L      P EL GP
Sbjct:  372 NGQYLPKIKVRPHENVLLRMLHAGGTASLEVQVPGCVIILASSDGLYLPKPRRMKTVILSPGARVDLILNCE------PSADGGMEMLRPIQSVKNPELYDFMGNHSDLYSGVLAFVHVQGKSLAEPLITAVPPPSELYGP 506          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: H3GQ05_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQ05_PHYRM)

HSP 1 Score: 85.5 bits (210), Expect = 1.230e-16
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCK-----GPGMFHLASSGGGDM--AYLGTRTNLFEGTLAFISVDGSALDMDLPKELPGP 396
            NGQ+ P +++ P E V LR++HAG      + + GC ++  + DG+YLP PR   +V++ PG+R DL + C+     GP +     S        ++G  ++L+ G LAF+ V G +LD  L   +P P
Sbjct:  372 NGQYLPKIQVRPHENVLLRMLHAGGTASLEVQVPGCSVMLASSDGLYLPKPRPMETVVLLPGARVDLVLNCEPTADGGPEVLRPIQSVKDPKLHGFMGNHSDLYSGVLAFVHVQGESLDQPLVTAVPPP 500          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: A0A6A3R1L3_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3R1L3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.240e-16
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCK-----GPGMFHLASSGGGDM--AYLGTRTNLFEGTLAFISVDGSALDMDLPKELPGP 396
            NGQ+ P + + P E V LR++HAG      + + GC ++  A DG+YLP+PR   +V++ PG+R DL + C+     GP +     S       +++G  ++L+ G LAF+ V G +LD  L   +P P
Sbjct:  383 NGQYLPKIEVRPHENVLLRVLHAGGTASLEVQVPGCSVMLAASDGLYLPNPRPMQTVVLLPGARVDLVLNCEPTAEGGPEVLRPIQSVKDPKLHSFMGNHSDLYSGVLAFVHVQGESLDEPLIAAVPPP 511          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: A0A225V8P2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V8P2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.880e-16
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCK-----GPGMFHLASSGGGDM--AYLGTRTNLFEGTLAFISVDGSALDMDLPKELPGPLNM 405
            NG++ P + + P E V LR++HAG      I + GC ++  A DG+Y+P PR   +V++ PG+R D+ + C      GP +     S        ++G  ++L+ G LAF+ V G +LD  L   +P P ++
Sbjct:  380 NGEYLPKIAVHPHENVLLRMLHAGGTTSLEIQVPGCSIMLAASDGLYMPKPRPLKTVILSPGARIDIVLNCAPAVHGGPEILRPLQSVKDPKLHGFMGNHSDLYSGVLAFVHVQGGSLDEPLITAVPPPSDL 511          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: G4YWY6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YWY6_PHYSP)

HSP 1 Score: 82.4 bits (202), Expect = 1.470e-15
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCK-----GPGMFHLASSGGGDM--AYLGTRTNLFEGTLAFISVDGSALDMDLPKELPGP 396
            NGQ+ P + + P E V LR++HAG      + + GC ++  A DG+Y P PR   +V++ PG+R D+ + C+     GP +     S        ++G  ++L+ G LAF+ V G +LD  L   +P P
Sbjct:  391 NGQYLPKIEVRPHENVLLRVLHAGGTASLEVQVPGCSIMLAASDGLYYPKPRPMETVVLLPGARVDVVLNCEPTAEGGPEILRPIQSVKDPKLHGFMGNHSDLYSGVLAFVHVQGESLDEPLITSVPPP 519          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: D0NGN8_PHYIT (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=D0NGN8_PHYIT)

HSP 1 Score: 80.9 bits (198), Expect = 5.060e-15
Identity = 42/129 (32.56%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCK-----GPGMFHLASSGGGDM--AYLGTRTNLFEGTLAFISVDGSALDMDLPKELPGP 396
            NG++ P +++ P E V LR++HAG      + + GC ++  A DG+Y+  PR   +V++ PG+R D+ + C+     GP +     S        ++G  ++L+ G LAFI V G +LD  L   +P P
Sbjct:  379 NGEYLPKIQVRPHENVLLRMLHAGGTASLEVQVPGCSIMLAASDGLYMAKPRPMETVILLPGARVDVVLNCEPATEVGPEILRPIQSVKDPKLHGFMGNHSDLYSGVLAFIHVQGESLDEPLVTAVPPP 507          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: A0A0P1ADX2_PLAHL (Multicopper oxidase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ADX2_PLAHL)

HSP 1 Score: 79.3 bits (194), Expect = 1.750e-14
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCKGPGMFH-----LASSGGGDMAY-LGTRTNLFEGTLAFISVDGSALDMDLPKELPGP 396
            NG++ P ++I P E V LR++HAG      I + GC ++  A DG+YLP PR + +V++ PG+R DL + C      H     + S    D+ + +G  ++ + G LAF+ V G + +  L   +P P
Sbjct:  376 NGEYLPKIQIHPDENVLLRILHAGGIASLEIQIPGCSIILAASDGLYLPKPRVRKTVILSPGARVDLVINCARTEDGHEFLRPIQSVKDPDLHFFMGNHSDFYSGVLAFLYVHGESRNESLVTMVPPP 503          
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Match: A0A662WKP9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKP9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.250e-14
Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = 1
Query:   31 NGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLTLARDGVYLPSPRRQPSVLMGPGSRADLAVQCK--GPGMFH----LASSGGGDMA-YLGTRTNLFEGTLAFISVDGSALDMDL------PKELPGPLN 402
            NGQ+ P + + P E V LR++HAG      +++ GC +L  A DG+ L  PR   +VL+ PG+R DL + C+    G F     L S    D   ++G  T+++ G LAFI V G +L+  +      P EL GP N
Sbjct:  405 NGQYLPKIEVRPHENVLLRMLHAGGTAILEMSVPGCSILLAASDGLNLLKPRPLGTVLLSPGARVDLILNCEPNAEGSFEELRPLQSIKDLDYHNFVGNHTDIYSGVLAFIHVQGESLNQPVITAVPPPSELYGPGN 541          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FH25_ECTSI7.760e-2759.29Multicopper oxidase, type 1 is implicated in celul... [more]
A0A835ZAK4_9STRA1.730e-2044.62Cupredoxin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A3M6VS59_9STRA2.610e-1733.33Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
H3GQ05_PHYRM1.230e-1634.11Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3R1L3_9STRA1.240e-1634.88Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A225V8P2_9STRA7.880e-1632.58Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G4YWY6_PHYSP1.470e-1533.33Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0NGN8_PHYIT5.060e-1532.56Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A0P1ADX2_PLAHL1.750e-1433.59Multicopper oxidase n=1 Tax=Plasmopara halstedii T... [more]
A0A662WKP9_9STRA8.250e-1436.50Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8292contigC-tenellus_contig8292:1075..2078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog81824.XP_001746360.1
PFAMsCu-oxidase,Cu-oxidase_2,Cu-oxidase_3
Model size429
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.7e-21
EggNOG OGsCOG2132@1|root,2RBNT@2759|Eukaryota,3A392@33154|Opisthokonta
DescriptionMulticopper oxidase
Cds size429
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790094.224769-CDS-C-tenellus_contig8292:1074..11781680790094.224769-CDS-C-tenellus_contig8292:1074..1178Choristocarpus tenellus KU2346CDSC-tenellus_contig8292 1075..1178 -
1680790094.2349145-CDS-C-tenellus_contig8292:1717..19121680790094.2349145-CDS-C-tenellus_contig8292:1717..1912Choristocarpus tenellus KU2346CDSC-tenellus_contig8292 1718..1912 -
1680790094.244793-CDS-C-tenellus_contig8292:1948..20781680790094.244793-CDS-C-tenellus_contig8292:1948..2078Choristocarpus tenellus KU2346CDSC-tenellus_contig8292 1949..2078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8292.1.1prot_C-tenellus_contig8292.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8292 1075..2078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8292.1.1

>prot_C-tenellus_contig8292.1.1 ID=prot_C-tenellus_contig8292.1.1|Name=mRNA_C-tenellus_contig8292.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=143bp
MCTCSSSPQANGQFQPVLRIAPGEAVRLRLVHAGVNDHFNITLGGCMLLT
LARDGVYLPSPRRQPSVLMGPGSRADLAVQCKGPGMFHLASSGGGDMAYL
GTRTNLFEGTLAFISVDGSALDMDLPKELPGPLNMGRLLQDLR
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mRNA from alignment at C-tenellus_contig8292:1075..2078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8292.1.1 ID=mRNA_C-tenellus_contig8292.1.1|Name=mRNA_C-tenellus_contig8292.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1004bp|location=Sequence derived from alignment at C-tenellus_contig8292:1075..2078- (Choristocarpus tenellus KU2346)
ATGTGTACTTGCTCTTCCTCCCCCCAGGCAAATGGCCAGTTCCAGCCTGT CCTTCGCATTGCCCCCGGAGAGGCTGTACGACTCCGTCTTGTACATGCCG GTGTCAATGACCACTTCAATATCACTCTAGGTAGCAATGAGATTGCTGGG AAGGTGGATGGGGAAGGGGGTTGTATGTTGCTGACACTAGCAAGAGATGG GGTATACCTGCCCAGCCCTCGCAGGCAACCATCAGTGTTAATGGGGCCGG GCTCACGGGCAGACTTAGCAGTGCAGTGCAAGGGGCCAGGTATGTTCCAT TTGGCATCTTCTGGAGGAGGTGATATGGCCTACTTGGGGACAAGAACCAA CCTCTTTGAAGGTGCGTGGTATGAATTGTTCTTGATTTGGGGGAACCTTC TCAGGGGTGGTACGAGTGCTGGACAAAGTTTGTTGTTTTTGCGTAGTTAA GGATTGTGTTGTGTGCTCCAAGGCATAACTTAAGGCACCAACTCACTAGA CACAAGCTGTTTACTACATTTTGTTGTTTTTTGCTTCTTTGACCATGCCC CGATGAGAATGAAGGGGATAGATGGGATTTTTGGAGTATTATGAGTGGAT TGGTCCCTTGTTGGACATGAACATTGTGGTCTTGAATACTGTTCCCCCCC AGGCACTCTGACCCTTCATCTGTTGTAGGTGCAAGAGGAACCCCCAATGC TGACGTAACAACTGCTTTGGGGGTTATCTATTGTAAATGATGCTCTCCTT TGTGCACCATCCAGGGTCCTTAGAGGCCTCGTTGCGGGGGTTTTCTTCTA CTGCATGTAGGCATAGCAATATATTAACTCAATATGACATAACTTGGGCC CTCATCCACTGGCACCCACACGCATCTACTCATCACATCTACTCATCAAG GTACATTGGCGTTCATCAGTGTTGATGGAAGTGCCTTGGACATGGACCTT CCAAAAGAGCTACCAGGCCCCCTAAACATGGGTCGGCTGCTGCAAGACCT CCGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8292:1075..2078-

>mRNA_C-tenellus_contig8292.1.1 ID=mRNA_C-tenellus_contig8292.1.1|Name=mRNA_C-tenellus_contig8292.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=429bp|location=Sequence derived from alignment at C-tenellus_contig8292:1075..2078- (Choristocarpus tenellus KU2346)
ATGTGTACTTGCTCTTCCTCCCCCCAGGCAAATGGCCAGTTCCAGCCTGT
CCTTCGCATTGCCCCCGGAGAGGCTGTACGACTCCGTCTTGTACATGCCG
GTGTCAATGACCACTTCAATATCACTCTAGGGGGTTGTATGTTGCTGACA
CTAGCAAGAGATGGGGTATACCTGCCCAGCCCTCGCAGGCAACCATCAGT
GTTAATGGGGCCGGGCTCACGGGCAGACTTAGCAGTGCAGTGCAAGGGGC
CAGGTATGTTCCATTTGGCATCTTCTGGAGGAGGTGATATGGCCTACTTG
GGGACAAGAACCAACCTCTTTGAAGGTACATTGGCGTTCATCAGTGTTGA
TGGAAGTGCCTTGGACATGGACCTTCCAAAAGAGCTACCAGGCCCCCTAA
ACATGGGTCGGCTGCTGCAAGACCTCCGG
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