mRNA_C-tenellus_contig8266.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8266.2.1
Unique NamemRNA_C-tenellus_contig8266.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8266.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8266contigC-tenellus_contig8266:3486..5824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size959
Hectar predicted targeting categoryother localisation
Exons3
Cds size753
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790091.7429748-UTR-C-tenellus_contig8266:3485..36901680790091.7429748-UTR-C-tenellus_contig8266:3485..3690Choristocarpus tenellus KU2346UTRC-tenellus_contig8266 3486..3690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790091.7548897-CDS-C-tenellus_contig8266:3690..37441680790091.7548897-CDS-C-tenellus_contig8266:3690..3744Choristocarpus tenellus KU2346CDSC-tenellus_contig8266 3691..3744 +
1680790091.7656422-CDS-C-tenellus_contig8266:4364..48651680790091.7656422-CDS-C-tenellus_contig8266:4364..4865Choristocarpus tenellus KU2346CDSC-tenellus_contig8266 4365..4865 +
1680790091.7811596-CDS-C-tenellus_contig8266:5626..58241680790091.7811596-CDS-C-tenellus_contig8266:5626..5824Choristocarpus tenellus KU2346CDSC-tenellus_contig8266 5627..5824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8266.2.1prot_C-tenellus_contig8266.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8266 3691..5824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8266.2.1

>prot_C-tenellus_contig8266.2.1 ID=prot_C-tenellus_contig8266.2.1|Name=mRNA_C-tenellus_contig8266.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=251bp
MPSPEDGDACSIGGEGLEDPTTELNQGDTIIGVTRSSGQIDGGSREGEEG
VADNIASSCCGDSDDGDRSKDDDASEEHGEGSNIEILGENDRNGHHDDKV
GKGKMQGGSEGRSTDATIAIGDSNIWGTEVDSDIIAKCTDGGNVGGVSSG
GGGLEPADRVAQILEMVPVDMDMLRAMAWEKGGYQRMENMSWLPGSGEGY
DQRRQDSPHWQRFHQFLLNAGAWNGDVMSSTKTCCHNNFLSFTRASSVGF
E
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mRNA from alignment at C-tenellus_contig8266:3486..5824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8266.2.1 ID=mRNA_C-tenellus_contig8266.2.1|Name=mRNA_C-tenellus_contig8266.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2339bp|location=Sequence derived from alignment at C-tenellus_contig8266:3486..5824+ (Choristocarpus tenellus KU2346)
GTTTGATACGTCAAAGAAGAAATAGGTACATTGGTGTACTCCAGAACGCC
TCAAACCGTAGTCGAAACCCAATGCTTCATCAAAGACCTAGTCCCCATAT
CCCTCCCTCTATAACCAACAAAGGGGGTTGGGGACCTGAAGATATAGGAG
GGATATAAGGAAGTCAGGATTCGACCGAGTAAGTGGTTGGGGACGGCCAC
ATCTCATGCCATCTCCAGAGGATGGTGATGCTTGTAGCATCGGAGGGGAG
GGACTGGAGGTGTGTAATCATCCATTCAAGGATTAGACCTCATGTATATT
GAAGTAAAGGTACACTCTTATACAAAAATTGAACATGTAGAAGATCGAAA
TGATGCTCCTTGAATGGGACTGTGAAGGCGGCTGACTGTCACATCGGGAC
CGTTATGTGAGGTATTTTTTCTTGGTGGAAGCCTTAAACTTGGTCCTTGA
GGACAACTAACGAAAGTCGTACTCACAGCACATGACAGGAAATTGTCCCT
CAGAGTGCTGCTCGTCAAGTCTTTAGTGTGTATCGTGCATCCTATTGTGG
GATAAACGGCCAGGGTAGGTGTGTCACTTACAAAATTGCGTAGCTCAGTT
GCATCCTAACTTTCACAACACGCATTGTAGTAGTCCATCGAAGGGTAATG
CATATATACGTGTATGTGATTGTGTGTGATTGTGTAGGCACAAACTTGAA
CCGTAGATCCATAAGGACTGTATGAAGATCCCTCCTCTTATGACATAGTC
CATGTTGAAAGTGGCAATGCTACGCCCTGTAGAAATGCCCACGTGTCCTT
TTCTCTACACCCTACACGATTATATGATACCTCACCCTCTGCACCCCTTT
CCTGCACCCCTTTCCTGCACTCCTTCAAGGACCCAACGACTGAGTTGAAC
CAAGGGGACACAATAATAGGCGTGACCCGGAGCTCAGGTCAGATCGATGG
TGGCAGTAGGGAGGGTGAGGAGGGTGTGGCGGACAACATCGCCAGCAGTT
GCTGCGGAGACAGTGATGATGGTGATCGCAGCAAAGATGATGATGCCAGT
GAGGAGCATGGAGAGGGAAGCAACATTGAGATACTGGGAGAAAATGACAG
AAATGGTCATCATGATGATAAAGTTGGCAAGGGTAAAATGCAAGGGGGAA
GTGAGGGACGAAGTACTGATGCAACCATAGCCATCGGTGACAGCAACATC
TGGGGTACCGAAGTGGACTCGGATATCATTGCCAAGTGTACGGATGGAGG
AAATGTGGGAGGTGTTTCTTCTGGAGGTGGGGGGTTGGAGCCGGCAGATC
GTGTGGCGCAAATTCTCGAGATGGTGCCCGTCGATATGGACATGTTGAGG
GCGATGGCTTGGGAGAAGGGCGGTTACCAGGTGGGAACGAGGGGAGAAAT
CAAGCCGTCTTCTGCATTTGAGATTGTGATACATAAACGGTTTTGATCAT
TTGACAGCTGCCGTTGTAGGTTGAGATGGACATTATTGTTGGACAGAGAA
TGGTAAGGATTTCATGAGGAGAACCTGGATGCGTCAGGCAGAGGGATATT
ATAGGTACCACCTTAAAGAGGCCATGTCTTCCTCTTGCCTTCCTCTCATC
AAAAACAACAACCTCAACACAAAGAAAACCAAACAATTTTTTGAGATTTT
TGGTGTTTTCTCCTGTTTCTCATGTTAGTGCAGTTAGTCGTATTTTATTT
CCTCATCTTCAATCTGAATAAATCCTAATCATAACACCACGTGGGCTTGC
TCATTTCACTTTACCTCGGGCCCTTGTGTCTACTGTTGATCAGTGAAGAT
GCACAAAGGGAGGTCGAATTTCAGCTCAGAAAAAAAGGTAGTACTTTTGA
TCGTAAGTGCTGGTAGACGAGGTTTTTTGGGGGGAAGGGACGGGTTTTGC
GCCCAGATCAGAGTTGAACCGGATGTGAAGCAAACACAAGCAATAATTGT
TTTGATTTGGAAATACCAAAAACAAATTAGTAAAATGGATACATGCTGGA
AGGAGTCTGTCTCCAATATATATATATATATATATATATATATATATATA
TATATTTTAAATTAAAAAATCCTTCTGGTTCTTGAAGATACAAAAAAAGA
CGACCCGTTAAAATGTATGAAGCCCCTCCGGCACACCGCAGCGTATGGAG
AACATGTCATGGCTGCCTGGAAGTGGTGAGGGTTATGATCAGCGTCGCCA
GGATAGTCCTCACTGGCAAAGGTTTCATCAATTTCTGTTGAATGCGGGCG
CTTGGAATGGCGACGTGATGAGCTCAACCAAAACCTGTTGCCACAATAAT
TTTCTCTCTTTCACAAGAGCTTCATCGGTTGGTTTTGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig8266:3486..5824+

>mRNA_C-tenellus_contig8266.2.1 ID=mRNA_C-tenellus_contig8266.2.1|Name=mRNA_C-tenellus_contig8266.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=753bp|location=Sequence derived from alignment at C-tenellus_contig8266:3486..5824+ (Choristocarpus tenellus KU2346)
ATGCCATCTCCAGAGGATGGTGATGCTTGTAGCATCGGAGGGGAGGGACT
GGAGGACCCAACGACTGAGTTGAACCAAGGGGACACAATAATAGGCGTGA
CCCGGAGCTCAGGTCAGATCGATGGTGGCAGTAGGGAGGGTGAGGAGGGT
GTGGCGGACAACATCGCCAGCAGTTGCTGCGGAGACAGTGATGATGGTGA
TCGCAGCAAAGATGATGATGCCAGTGAGGAGCATGGAGAGGGAAGCAACA
TTGAGATACTGGGAGAAAATGACAGAAATGGTCATCATGATGATAAAGTT
GGCAAGGGTAAAATGCAAGGGGGAAGTGAGGGACGAAGTACTGATGCAAC
CATAGCCATCGGTGACAGCAACATCTGGGGTACCGAAGTGGACTCGGATA
TCATTGCCAAGTGTACGGATGGAGGAAATGTGGGAGGTGTTTCTTCTGGA
GGTGGGGGGTTGGAGCCGGCAGATCGTGTGGCGCAAATTCTCGAGATGGT
GCCCGTCGATATGGACATGTTGAGGGCGATGGCTTGGGAGAAGGGCGGTT
ACCAGCGTATGGAGAACATGTCATGGCTGCCTGGAAGTGGTGAGGGTTAT
GATCAGCGTCGCCAGGATAGTCCTCACTGGCAAAGGTTTCATCAATTTCT
GTTGAATGCGGGCGCTTGGAATGGCGACGTGATGAGCTCAACCAAAACCT
GTTGCCACAATAATTTTCTCTCTTTCACAAGAGCTTCATCGGTTGGTTTT
GAA
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