mRNA_C-tenellus_contig8262.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8262.2.1
Unique NamemRNA_C-tenellus_contig8262.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: D7G183_ECTSI (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G183_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 6.740e-84
Identity = 149/258 (57.75%), Postives = 180/258 (69.77%), Query Frame = 1
Query:    1 PLRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKARGTQKGPGFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLHPKHG-LLTMKDLQDAGVVNHIKYGVRLVASSFAPTMQSITDG-KVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVILPRRARPPPRLMPYFLDNGKRGYLSPEVKSPTVCFF 768
            PLRLNN+APN+GA R RKRVGRG GS         HKGSKAR   K  GFEGGQTP  RRIPKRGFKNG D+SFETVSV+RI  ++AMGRL P    L++MKDLQDAG+V  IK+GVRLVA +   ++       ++T  +GD +    E + A+ E  + A+           +LP +HLEVSRAS  AI AVEA GGTVTC HFN LALR+LLKPEKF  LPRRARPPPRLMP+FLD+G+RGYL+P+V+   +  F
Sbjct:   48 PLRLNNLAPNDGARRDRKRVGRGNGSGTGKTCGKGHKGSKARKGTKRIGFEGGQTPFHRRIPKRGFKNGADESFETVSVDRIYMYIAMGRLRPNDACLISMKDLQDAGIVQDIKFGVRLVAGAKKNSVLGHNSPHRLTGATGDATGAENEVARAASEATKGAK-----------SLPPVHLEVSRASAGAIEAVEAQGGTVTCAHFNRLALRALLKPEKFEELPRRARPPPRLMPFFLDHGRRGYLAPDVQMRNLKLF 294          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: A0A836CA06_9STRA (Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA06_9STRA)

HSP 1 Score: 207 bits (526), Expect = 4.670e-63
Identity = 131/266 (49.25%), Postives = 158/266 (59.40%), Query Frame = 1
Query:    1 PLRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKARGTQKGP-GFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLH---PKHG----LLTMKDLQDAGVVNHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFV--ILPRRARPPPRLMPYFLDNGKRGYLSPEVKSPTVCFF 768
            PL+LN + PN GA   ++RVGRG GS         +KG++AR     P GFEGGQTPL RR+PKRGFKNG D SF+ VS++++  +VAMGRL    P+ G    +LTMKDLQDAGV+  IK+G++LV        +   DG                   +  V E A   P            +HLEVS AS  AIAAVEA GGTVTC HFN LALR+LLKP KF   +LPRRARPPPRLM  FL   KRGYLSPEV+   +  F
Sbjct:    3 PLKLNTLVPNPGAVSQKRRVGRGIGSGRGKTSKRGNKGTRARQGGSVPLGFEGGQTPLHRRLPKRGFKNGADTSFDIVSIDKVFEYVAMGRLRVPVPEPGAPPRMLTMKDLQDAGVIGRIKFGLKLVGGR-----RQTADGDAP---------------MARAVPESAYAAP------------LHLEVSGASAGAIAAVEARGGTVTCAHFNRLALRALLKPHKFAPGLLPRRARPPPRLMARFLSGDKRGYLSPEVQLRNLRLF 236          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: A0A4D9D510_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D510_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.780e-46
Identity = 115/273 (42.12%), Postives = 141/273 (51.65%), Query Frame = 1
Query:    4 LRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKARGTQKGP-GFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLH-PKHGLLTMKDLQDAGV--VNHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVI--------------LPRRARPPPRLMPYFLDNGKRGYLSPEVKSPTVCFF 768
            L L+++  N GA R RKRVGRG GS           G K R +   P GFEGGQTP+ RR+PK GFKN   +    + V  +  ++ MGRL  P   L+TMKDL DAG+   N +K+G++L+A                                            G E V+       H+EVSRAS  AI AVE AGGTVTCVHFN LALR+LLKPE F +              LPRRARPPPRLMP +LD+ +RGYLSPEV+      F
Sbjct:   19 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLFVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLAR-------------------------------------------GGEHVHTP----FHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPVLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKGLF 244          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: W7U3I7_9STRA (Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3I7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.050e-45
Identity = 115/273 (42.12%), Postives = 141/273 (51.65%), Query Frame = 1
Query:    4 LRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKARGTQKGP-GFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLH-PKHGLLTMKDLQDAGV--VNHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVI--------------LPRRARPPPRLMPYFLDNGKRGYLSPEVKSPTVCFF 768
            L L+++  N GA R RKRVGRG GS           G K R +   P GFEGGQTP+ RR+PK GFKN   +    + V  +  ++ MGRL  P   L+TMKDL DAG+   N +K+G++L+A                                            G E V+       H+EVSRAS  AI AVE AGGTVTCVHFN LALR+LLKPE F +              LPRRARPPPRLMP +LD+ +RGYLSPEV+      F
Sbjct:  109 LSLSDLHDNPGAKRERKRVGRGIGSGSGKTSGRGMNGQKKRSSVNIPQGFEGGQTPMHRRLPKTGFKNIWAEPLTPLHVGTVQNWIDMGRLVVPADRLMTMKDLVDAGIFKANRVKHGIKLLAR-------------------------------------------GGEHVHTP----FHIEVSRASLGAIDAVEKAGGTVTCVHFNRLALRALLKPEAFRVPMLGEDGQVEETLQLPRRARPPPRLMPLYLDSDRRGYLSPEVQRRNKDLF 334          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: K3X7J1_GLOUD (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7J1_GLOUD)

HSP 1 Score: 161 bits (407), Expect = 4.630e-45
Identity = 106/254 (41.73%), Postives = 148/254 (58.27%), Query Frame = 1
Query:    4 LRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKAR---GTQKGPGFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLHPKHGLLTMKDLQDAGVV--NHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVILPRRARPPPRLMPYFLDNGKRGYLSPEVKS 750
            +RLN +  NEGA +  KR+GRG GS  XX XXX HKG KAR   G+ +GPGFEGGQTP+ +R+PKRGF N      E V+++++  FV MGRL      +TMK+L D+G+V  + +K+G++L+                    G+H                                 S+ +EVS+AS SAI A+EAAGG++T V+ N LALR+LLKP KF ++P+ ARP P+ + Y+ D  KRGYLSPE+++
Sbjct:   43 VRLNTLQDNEGAHKRGKRLGRGIGSGKXXTXXXGHKGQKARSGGGSGRGPGFEGGQTPIYQRVPKRGFNNKFATPMEPVNLDKLQLFVDMGRLDASK-TITMKELVDSGMVTCSRVKHGIKLLGKG-----------------GEH------------------------------LTTSLTIEVSQASKSAIQAIEAAGGSITSVYHNRLALRALLKPHKFELIPQFARPNPKKLTYYTDYEKRGYLSPEIQA 248          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: A0A7S2V348_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V348_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.760e-45
Identity = 100/257 (38.91%), Postives = 142/257 (55.25%), Query Frame = 1
Query:    1 PLRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKARGTQKGPGFEGGQTPLIRRIPKRGFKNGP-DKSFETVSVERIARFVAMGRLHPKHGL-LTMKDLQDAGVVNHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKF--VILPRRARPPPRLMPYFLDNGKRGYLSPEVKSPTV 759
            PL LNN++PN G+ + R+RVGRG GS         HKG K R   KG GF GGQTPL R +PKRGF N    K  E +++ R+  ++ MGRL PK    +T++D++++G+++ IK+GV+L+A                                               E +   +P +++EV+RAS  AI AVE  GG+V C +FN L LR+ L P KF   ++PRRA PPP++MPY+LD   RGYLSPE++   +
Sbjct:   40 PLCLNNLSPNPGSKKQRRRVGRGIGSGRGKTCGRGHKGQKKRKPAKGGGFIGGQTPLHRSLPKRGFSNKRFQKPLEQLNLGRLQLWIDMGRLIPKPDQPITLRDIKESGLISRIKHGVKLLAK----------------------------------------------EKDLVHMP-LNIEVTRASKEAIKAVEEKGGSVVCSYFNRLGLRAHLFPHKFHPALVPRRAAPPPKIMPYYLDYNNRGYLSPEIQLKKI 249          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: A0A6U0WPW9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0WPW9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.980e-45
Identity = 104/251 (41.43%), Postives = 135/251 (53.78%), Query Frame = 1
Query:    4 LRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKAR-GTQKGPGFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMG--RLHPKHGLLTMKDLQDAGVVNHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVILPRRARPPPRLMPYFLDNGKRGYLSPEVK 747
            L LN +  N GA RPRKR GRG GS         HKG KAR G     GFEGGQTPL R +PKRGF N   K + +++V  I   +  G  R+      LTM+DL   G+   ++ GV+L+            +GK                                    R T P +H+EVSRAS SAI A+E AGG++TCV++N +ALRSL+ PEKF + PR ARPPP+LMP++LD   RG+LSPE++
Sbjct:   37 LTLNMLRDNAGANRPRKRKGRGVGSGLGKTSGRGHKGQKARAGRNPFLGFEGGQTPLYRILPKRGFTNKFAKEYASINVGAIQDKIDAGALRVPTDSNPLTMRDLVRCGLTTRLRSGVKLLG-----------EGK-----------------------------------ERVTTP-LHVEVSRASQSAITAIEGAGGSITCVYYNPIALRSLMFPEKFQLAPRIARPPPKLMPFYLDYQNRGFLSPEIQ 240          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: F0WVJ0_9STRA (50S ribosomal protein L15 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WVJ0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.940e-44
Identity = 102/257 (39.69%), Postives = 145/257 (56.42%), Query Frame = 1
Query:    4 LRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKARGTQK---GPGFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLHPKHGLLTMKDLQDAGVVN--HIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVILPRRARPPPRLMPYFLDNGKRGYLSPEVKSPTV 759
            +RLNN+A NEG+ +  KRVGRG GS         HKG KAR   K   GPGFEGGQTP+ +R+PKRGF N        ++++++  F+ MGR+   H + T+K+L D G+V    +K+G++L+             GK                              G+E +   T P + +EV++AST AI AVEA GG++T V++N L LR+LLKP KF +LPR ARP P+ M Y+ +  KRGYLSPE+++  +
Sbjct:   50 VRLNNLADNEGSHKRSKRVGRGIGSGKGKTCGRGHKGQKARAGGKAGRGPGFEGGQTPIYQRVPKRGFNNRFATPMTVINLDKLQLFIDMGRIDANHKI-TLKELVDCGMVTCCKVKFGIKLL-------------GK------------------------------GAEHL---TTP-VEIEVTQASTCAIKAVEAVGGSITAVYYNRLGLRALLKPHKFDVLPRFARPNPKKMRYYTNYEKRGYLSPEMQAKKL 258          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: A0A484EHX2_BRELC (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHX2_BRELC)

HSP 1 Score: 158 bits (399), Expect = 5.370e-44
Identity = 106/253 (41.90%), Postives = 144/253 (56.92%), Query Frame = 1
Query:    4 LRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKAR---GTQKGPGFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLHPKHGLLTMKDLQDAGVV--NHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVILPRRARPPPRLMPYFLDNGKRGYLSPEVK 747
            +RLN +  N+GA +  KR+GRG GS  XX XXX HKG KAR   G+ +GPGFEGGQTPL +R+PKRGF N      ETV+++++  FV MGRL      +T+K L D+G+   + +K+G++L+ +                  G H                                  I +EVS+AS SAI AVEA GGT+T V+ N LALR+LLKP KF ILP+ ARP P+ + Y+ +  KRGYLSP+++
Sbjct:   34 VRLNTLRDNDGAHKRGKRLGRGIGSGKXXTXXXGHKGQKARSGGGSGRGPGFEGGQTPLYQRVPKRGFNNNFATPMETVNLDKLQLFVDMGRLDANK-TITIKSLVDSGLATCSRVKHGIKLLGNG-----------------GQH------------------------------LTAKIDIEVSQASKSAIKAVEAVGGTITSVYHNRLALRALLKPHKFEILPQPARPNPKKLTYYTNYDKRGYLSPKIQ 238          
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Match: A0A3F2RRV0_9STRA (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RRV0_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.590e-44
Identity = 99/253 (39.13%), Postives = 143/253 (56.52%), Query Frame = 1
Query:    4 LRLNNIAPNEGATRPRKRVGRGKGSXXXXXXXXXHKGSKAR---GTQKGPGFEGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLHPKHGLLTMKDLQDAGVV--NHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEASEASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVTCVHFNTLALRSLLKPEKFVILPRRARPPPRLMPYFLDNGKRGYLSPEVK 747
            +RLN +  N+GA +  KR+GRG GS         HKG KAR   G+ +GPGFEGGQTPL +R+PKRGF N      ETV+++++  FV MGRL   + + T+KDL D+G+V  + +K+G++L+ +      Q++T                                             + +EVS+AS +AI AVEA GG +T V+ N LALR+LLKP KF ++P+ ARP P+ + Y+ +  KRGYLSPE++
Sbjct:   28 VRLNTLRDNDGAHKRSKRLGRGIGSGKGKTCGRGHKGQKARSGGGSGRGPGFEGGQTPLYQRVPKRGFNNKFATPMETVNLDKLQLFVDMGRLDASNKI-TIKDLVDSGIVTCSRVKHGIKLLGNGG----QNLT-------------------------------------------AKLDIEVSQASETAIKAVEAVGGNITSVYHNRLALRALLKPHKFEMIPQAARPNPKKLKYYTNYEKRGYLSPEIQ 232          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8262.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G183_ECTSI6.740e-8457.75Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A836CA06_9STRA4.670e-6349.25Ribosomal protein L18e/L15P (Fragment) n=1 Tax=Tri... [more]
A0A4D9D510_9STRA2.780e-4642.12Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
W7U3I7_9STRA2.050e-4542.12Ribosomal protein L18e/L15P n=1 Tax=Nannochloropsi... [more]
K3X7J1_GLOUD4.630e-4541.73Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A7S2V348_9STRA4.760e-4538.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U0WPW9_9STRA6.980e-4541.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0WVJ0_9STRA1.940e-4439.6950S ribosomal protein L15 putative n=1 Tax=Albugo ... [more]
A0A484EHX2_BRELC5.370e-4441.90Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A3F2RRV0_9STRA6.590e-4439.13Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8262contigC-tenellus_contig8262:3850..5727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G183
Preferred nameMRPL15
PFAMsRibosomal_L27A
Model size771
Max annot lvl2759|Eukaryota
KEGG koko:K02876
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034097,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0070013,GO:0070125,GO:0070126,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990823,GO:1990830,GO:1990904
Exons4
Evalue1.1e-84
EggNOG OGsCOG0200@1|root,KOG0846@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L18e/L15P
Ec32 orthologEc-23_002750.1
Descriptionstructural constituent of ribosome
Cds size771
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790091.5327485-CDS-C-tenellus_contig8262:3849..40551680790091.5327485-CDS-C-tenellus_contig8262:3849..4055Choristocarpus tenellus KU2346CDSC-tenellus_contig8262 3850..4055 +
1680790091.5490775-CDS-C-tenellus_contig8262:4313..44191680790091.5490775-CDS-C-tenellus_contig8262:4313..4419Choristocarpus tenellus KU2346CDSC-tenellus_contig8262 4314..4419 +
1680790091.5582438-CDS-C-tenellus_contig8262:4878..52021680790091.5582438-CDS-C-tenellus_contig8262:4878..5202Choristocarpus tenellus KU2346CDSC-tenellus_contig8262 4879..5202 +
1680790091.5679436-CDS-C-tenellus_contig8262:5592..57271680790091.5679436-CDS-C-tenellus_contig8262:5592..5727Choristocarpus tenellus KU2346CDSC-tenellus_contig8262 5593..5727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8262.2.1prot_C-tenellus_contig8262.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8262 3850..5727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8262.2.1

>prot_C-tenellus_contig8262.2.1 ID=prot_C-tenellus_contig8262.2.1|Name=mRNA_C-tenellus_contig8262.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=257bp
PLRLNNIAPNEGATRPRKRVGRGKGSGRGKTCGKGHKGSKARGTQKGPGF
EGGQTPLIRRIPKRGFKNGPDKSFETVSVERIARFVAMGRLHPKHGLLTM
KDLQDAGVVNHIKYGVRLVASSFAPTMQSITDGKVTDTSGDHSENAVEAS
EASVEVEEDAEGEPGSEEVNRATLPSIHLEVSRASTSAIAAVEAAGGTVT
CVHFNTLALRSLLKPEKFVILPRRARPPPRLMPYFLDNGKRGYLSPEVKS
PTVCFF*
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mRNA from alignment at C-tenellus_contig8262:3850..5727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8262.2.1 ID=mRNA_C-tenellus_contig8262.2.1|Name=mRNA_C-tenellus_contig8262.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1878bp|location=Sequence derived from alignment at C-tenellus_contig8262:3850..5727+ (Choristocarpus tenellus KU2346)
CCCCTTCGCCTCAACAATATCGCACCAAATGAGGGGGCCACAAGACCACG CAAGCGTGTGGGTCGAGGAAAAGGGTCTGGCAGAGGAAAGACTTGTGGAA AAGGGCACAAAGGTTCGAAGGCAAGAGGCACTCAGAAGGGACCAGGCTTC GAGGGTGGTCAAACCCCGCTAATCCGAAGAATCCCTAAGCGAGGCTTCAA GAATGGGTAAGGTCACACAGTTGACAATGTTGGGATATGGACATTGTGTG ATTGGGCATCTTACAGGGAGTGAATCTCCTCTGCTGAAATATAAGCCCTC TACTCATGTCCTTCGATGATACCTATACTTCCAACGGCCCGAGCTCTTTC TTTGAGCGTCACATTTATCTCTTTTACTCGCCTCTTTTTCGTCAATCCTG GAGAAACAATGTCAAGATCTATTCTAATTAAGACTGCCTACTCTTATACT TCTTTGTACCTCAGGCCAGACAAGTCGTTTGAGACGGTGTCCGTAGAGCG CATCGCAAGGTTTGTCGCGATGGGCCGTTTGCATCCTAAGCATGGCCTCC TCACAATGAAGGACTTGCAGGTGTGTGTCCCACAACTCGCAGGCAAAAGA GACCACTGCATTGACTGATTCCCAACTTGATTGAAAGATGCTTGCAAGAA GAACGTATTGAGTAGCCCATTTCTTGTCGCCTTTTGAGTCCGCCCACCGT GCAAACTGGCAAGAGGTGCTCTATTGGCCACACACAACACAATCCAGGTA GTTTCAGTTCTACATATATCAGTCTGAACTCTCTCCTCTGAGTGAAATTA TACCTTTTGGGGTCTTACATACTGGGTTGAGCCATTACTCTATTTCTTAC AGCAGGCAAGCTCGAAAGCAGACAGTTCAAATGTAACAACCCCAAAGTGC CAATATCGTAGTATTCCATAAATCTGACAGCTGCGTCCTCCCAGATCCTC CTACACACACCCCACCCCTGTTAGCACCTTTACTTTCATCTAAATGCCTA CCCTCTCCTCACCCTCACATTGTGAATAGGATGCTGGTGTGGTCAACCAT ATCAAATATGGTGTTAGGCTAGTTGCAAGCAGCTTTGCCCCCACAATGCA AAGCATCACTGATGGGAAGGTAACAGATACTTCTGGAGACCATAGTGAAA ATGCTGTTGAGGCATCAGAGGCGTCCGTTGAAGTGGAAGAAGATGCTGAA GGTGAGCCAGGGTCAGAGGAAGTGAACCGTGCAACCTTGCCCTCAATCCA CCTGGAGGTCAGCAGGGCTTCAACCTCGGCAATAGCAGCAGTGGAAGCAG CTGGTGGCACTGTGACCTGTGTGCACTTCAACACTCTGGCACTTCGGTCA TTGGTAAGAGGGTTTGGAGACATCCTTGTTGTGGATGCATATTTGCTTGT CCTTTGTTTCTACCTCTCAAACAATTTCTATATGCCCCGTATACTCTTCT ATGCACAATTGTTACCTCCAGTTAGTGTGAGCCTACCCCCCCCCCCCCCC CCTTGCTCCCTAGGTAAAGATTTACGTATCAAAGTCGGTGCAATCATCAA TCAAATGCATTTCCCGATTGAATAAAAAGACAACTACAAATATCAAAGTA TCTAGACAGTAGTAGGAGATGATGTACTTCTAACACAGGCAAAGTCCATG CAATTTTTCTTTTATCTACGTGATCAAGCAGAGCAAGAAGTCTCCCTCCT ACCCCCAACCCCCATCACCTCTTCATTCTACCTTCTCGTGCAGCTGAAAC CTGAGAAGTTTGTCATTTTGCCAAGGAGAGCTCGCCCTCCTCCGCGCCTC ATGCCTTACTTCTTAGATAATGGAAAGCGTGGCTACCTATCCCCTGAGGT GAAGAGTCCTACTGTGTGTTTTTTTTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig8262:3850..5727+

>mRNA_C-tenellus_contig8262.2.1 ID=mRNA_C-tenellus_contig8262.2.1|Name=mRNA_C-tenellus_contig8262.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=771bp|location=Sequence derived from alignment at C-tenellus_contig8262:3850..5727+ (Choristocarpus tenellus KU2346)
CCCCTTCGCCTCAACAATATCGCACCAAATGAGGGGGCCACAAGACCACG
CAAGCGTGTGGGTCGAGGAAAAGGGTCTGGCAGAGGAAAGACTTGTGGAA
AAGGGCACAAAGGTTCGAAGGCAAGAGGCACTCAGAAGGGACCAGGCTTC
GAGGGTGGTCAAACCCCGCTAATCCGAAGAATCCCTAAGCGAGGCTTCAA
GAATGGGCCAGACAAGTCGTTTGAGACGGTGTCCGTAGAGCGCATCGCAA
GGTTTGTCGCGATGGGCCGTTTGCATCCTAAGCATGGCCTCCTCACAATG
AAGGACTTGCAGGATGCTGGTGTGGTCAACCATATCAAATATGGTGTTAG
GCTAGTTGCAAGCAGCTTTGCCCCCACAATGCAAAGCATCACTGATGGGA
AGGTAACAGATACTTCTGGAGACCATAGTGAAAATGCTGTTGAGGCATCA
GAGGCGTCCGTTGAAGTGGAAGAAGATGCTGAAGGTGAGCCAGGGTCAGA
GGAAGTGAACCGTGCAACCTTGCCCTCAATCCACCTGGAGGTCAGCAGGG
CTTCAACCTCGGCAATAGCAGCAGTGGAAGCAGCTGGTGGCACTGTGACC
TGTGTGCACTTCAACACTCTGGCACTTCGGTCATTGCTGAAACCTGAGAA
GTTTGTCATTTTGCCAAGGAGAGCTCGCCCTCCTCCGCGCCTCATGCCTT
ACTTCTTAGATAATGGAAAGCGTGGCTACCTATCCCCTGAGGTGAAGAGT
CCTACTGTGTGTTTTTTTTAA
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