mRNA_C-tenellus_contig8251.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8251.1.1
Unique NamemRNA_C-tenellus_contig8251.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A7S2SKH2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKH2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.320e-19
Identity = 67/192 (34.90%), Postives = 97/192 (50.52%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSWERKVRSPGEKGAHYDSNMKSLTKAACQDLRDEYKHRMTVEEARKDVEAAKAEVEYIEMKMLFLSLKV---AAAEDEAGTKCPKACERLKLGPGLLEAANGKL 567
            QV+SSILW ILGA HPYYMEP  GGWEGT P+    HDP+VI Y EEV  GT K AIL Q+                                             ++++  +   ++L+ E+++ +T E+A +++  A  EVE++  KM +L  KV    AA  +  ++ PKA +RL +GP LL  A  ++
Sbjct:  251 QVVSSILWCILGAMHPYYMEPDFGGWEGTAPADDEEHDPEVIEYDEEVYFGTAKWAILEQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXDLRARLEPVVEELQLEFRNLLTEEQAEEELRIALQEVEFVTQKMAYLRAKVDGCRAAGRDPSSEMPKALQRLGMGPRLLRRAKERV 432          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A7S3KY03_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KY03_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.620e-9
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTE-EVRRGTIKHAILGQLRNPPE---GFEGVIRAHFACKRRMVLSMIDSW 270
            QVL SI   ILG EHPYY+EPG GGWE ++ +    H P  +  ++ ++R GT+K+A+L   +  P     F+ VI AHF   +  +L  +  W
Sbjct:  260 QVLVSIQGLILGVEHPYYLEPGFGGWEESIVNHKGAHVPPHVKSSDAKIREGTVKYAMLETCKATPRYLHAFQDVITAHFTHHKESILKEVRGW 353          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A316V045_9BASI (UBC core domain-containing protein n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316V045_9BASI)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-8
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSW 270
            QVL S+   ++  E P   EPG   W GT  S H         YT+ +RR T++HA+L  L+NPPE +E V++ HF  KR +++  +D W
Sbjct:  803 QVLLSLSSLVMAEEEPAVNEPGWENWRGTDRSMH---------YTKNLRRQTVRHAMLRTLQNPPEPWEEVVKGHFRQKRGVIVKQLDDW 883          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A2P6ND81_9EUKA (Baculoviral IAP repeat-containing protein 6 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6ND81_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-8
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSWERKVRSPGEKGAHYDSNMKSLTK 339
            QVL SI   ++  E P++ EPG     GT        D     Y + +R  T+K A+L QL+NPP GFE VIR+HF  KR  VLS ++ W ++  SPG K       ++ L K
Sbjct: 2941 QVLVSIQ-SLIFVEQPFFNEPGFENLMGTQNGDKQSRD-----YNQNIRLQTLKWAMLHQLKNPPAGFEDVIRSHFKLKRESVLSEVEVWVKE--SPGGKQQQMRDQLEELKK 3045          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A0L0D5I5_THETB (Ubiquitin-conjugating enzyme family protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5I5_THETB)

HSP 1 Score: 70.5 bits (171), Expect = 2.510e-8
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSWE 273
            QVL SI   ++    PY+ EPG+    GT PS     D + + YT  +   T++ AILGQLRNPP+GFE VIRAH   KR+ +L+M   W+
Sbjct: 3993 QVLVSIQ-SLIMVPEPYFNEPGYESSRGT-PSG----DAENLSYTLNIYTYTLQTAILGQLRNPPKGFEDVIRAHLYMKRKEILAMAARWK 4077          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A1X6MTJ1_9APHY (UBC core domain-containing protein n=1 Tax=Postia placenta MAD-698-R-SB12 TaxID=670580 RepID=A0A1X6MTJ1_9APHY)

HSP 1 Score: 68.6 bits (166), Expect = 6.920e-8
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSW 270
            QVL SI   IL  E PY  EPG  G  GT         P+   Y+  VRR  ++ A+LG L+NPPE FE VIR H+  K R ++  +D W
Sbjct:  716 QVLISIQSMIL-CEEPYLNEPGWAGSAGT---------PQSRAYSANVRRMVVRTAMLGNLKNPPEPFEDVIRTHYRLKARSIMKQLDEW 795          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A165E931_9APHY (Ubiquitin conjugating enzyme family protein n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165E931_9APHY)

HSP 1 Score: 68.6 bits (166), Expect = 7.090e-8
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSW 270
            QVL SI   IL  E PY  EPG   W      A S   P+   Y+  VRR  +K A+LG L+NPPE FE VIR HF  K R +++ +D W
Sbjct:  765 QVLISIQSMIL-CEEPYLNEPG---W------AQSAGTPQSRAYSANVRRMVVKTAMLGNLKNPPEPFEDVIRTHFRLKARSIMAQLDDW 844          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A137QSM7_9AGAR (Baculoviral IAP repeat-containing protein 6 (Fragment) n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137QSM7_9AGAR)

HSP 1 Score: 68.2 bits (165), Expect = 9.140e-8
Identity = 40/90 (44.44%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSW 270
            QVL SI   IL  + PY  EPG     GT         P+ + Y+  VRR  +K A+LG LRNPPE FE VIR HF  K R + + +D W
Sbjct:  732 QVLISIQSMIL-CDEPYLNEPGWASDGGT---------PQSLAYSANVRRMVVKTAMLGNLRNPPEPFEEVIRTHFRLKARSISAQLDEW 811          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A165R518_9APHY (UBC core domain-containing protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165R518_9APHY)

HSP 1 Score: 67.8 bits (164), Expect = 1.220e-7
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSW 270
            QVL SI   IL  E PY  EPG     GT         P+   Y+  VRR  +K A+LG L+NPPE FE VIR HF  K + +++ +D+W
Sbjct:  757 QVLISIQSMIL-CEEPYLNEPGWANSGGT---------PQSRAYSANVRRMVVKTAMLGNLKNPPEPFEDVIRTHFRLKAKSIIAQLDNW 836          
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Match: A0A2R5GBE9_9STRA (Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBE9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.460e-7
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 QVLSSILWGILGAEHPYYMEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGFEGVIRAHFACKRRMVLSMIDSWERKVRSPGEKGAHYDSNMKSLTK 339
            QVL SI   ILGAE+PY+ EPG     GT     +        Y E++R  TI+HAI+ Q+ +PP  FE ++R HF  KR  + + +  W  +    G   AH  +N+++L K
Sbjct:  590 QVLVSIQSAILGAEYPYFNEPGAEVEWGTARGRRARRLHTNGGY-EKLRESTIRHAIIAQILDPPRFFEDLVREHFRLKRNHIQTTVQGWVAEAEEFGP-SAHL-TNLRALQK 699          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8251.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SKH2_9STRA3.320e-1934.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3KY03_9STRA3.620e-939.36Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A316V045_9BASI1.050e-838.89UBC core domain-containing protein n=1 Tax=Jaminae... [more]
A0A2P6ND81_9EUKA1.090e-838.94Baculoviral IAP repeat-containing protein 6 n=1 Ta... [more]
A0A0L0D5I5_THETB2.510e-845.05Ubiquitin-conjugating enzyme family protein n=1 Ta... [more]
A0A1X6MTJ1_9APHY6.920e-843.33UBC core domain-containing protein n=1 Tax=Postia ... [more]
A0A165E931_9APHY7.090e-845.56Ubiquitin conjugating enzyme family protein n=1 Ta... [more]
A0A137QSM7_9AGAR9.140e-844.44Baculoviral IAP repeat-containing protein 6 (Fragm... [more]
A0A165R518_9APHY1.220e-743.33UBC core domain-containing protein n=1 Tax=Daedale... [more]
A0A2R5GBE9_9STRA2.460e-737.17Ubiquitin-conjugating enzyme E2 Z n=1 Tax=Hondaea ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8251contigC-tenellus_contig8251:742..6397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog529818.AMSG_02492T0
PFAMsE1_4HB,E1_FCCH,E1_UFD,ThiF,UBA,UBA_e1_thiolCys,UQ_con
Model size3488
Max annot lvl2759|Eukaryota
KEGG koko:K03178,ko:K10586,ko:K10699
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.86e-08
EggNOG OGsCOG5078@1|root,KOG0895@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-27_004540.1
EC2.3.2.23,6.2.1.45
Descriptionubiquitin-protein transferase activity
Cds size576
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790090.682757-UTR-C-tenellus_contig8251:741..7951680790090.682757-UTR-C-tenellus_contig8251:741..795Choristocarpus tenellus KU2346UTRC-tenellus_contig8251 742..795 +
1680790090.7370317-UTR-C-tenellus_contig8251:3539..63971680790090.7370317-UTR-C-tenellus_contig8251:3539..6397Choristocarpus tenellus KU2346UTRC-tenellus_contig8251 3540..6397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790090.701663-CDS-C-tenellus_contig8251:795..9211680790090.701663-CDS-C-tenellus_contig8251:795..921Choristocarpus tenellus KU2346CDSC-tenellus_contig8251 796..921 +
1680790090.7140281-CDS-C-tenellus_contig8251:2582..28131680790090.7140281-CDS-C-tenellus_contig8251:2582..2813Choristocarpus tenellus KU2346CDSC-tenellus_contig8251 2583..2813 +
1680790090.7281086-CDS-C-tenellus_contig8251:3320..35391680790090.7281086-CDS-C-tenellus_contig8251:3320..3539Choristocarpus tenellus KU2346CDSC-tenellus_contig8251 3321..3539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8251.1.1prot_C-tenellus_contig8251.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8251 796..3539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8251.1.1

>prot_C-tenellus_contig8251.1.1 ID=prot_C-tenellus_contig8251.1.1|Name=mRNA_C-tenellus_contig8251.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=192bp
MEPGHGGWEGTMPSAHSVHDPKVIWYTEEVRRGTIKHAILGQLRNPPEGF
EGVIRAHFACKRRMVLSMIDSWERKVRSPGEKGAHYDSNMKSLTKAACQD
LRDEYKHRMTVEEARKDVEAAKAEVEYIEMKMLFLSLKVAAAEDEAGTKC
PKACERLKLGPGLLEAANGKLVAAQTIFRQLSGVDSTVLEG*
back to top

mRNA from alignment at C-tenellus_contig8251:742..6397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8251.1.1 ID=mRNA_C-tenellus_contig8251.1.1|Name=mRNA_C-tenellus_contig8251.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5656bp|location=Sequence derived from alignment at C-tenellus_contig8251:742..6397+ (Choristocarpus tenellus KU2346)
CAGGTATTATCATCCATCCTTTGGGGCATTTTGGGTGCGGAACACCCATA CTACATGGAGCCAGGTCATGGGGGATGGGAGGGTACGATGCCATCAGCTC ATAGTGTGCATGATCCGAAGGTGATATGGTACACGGAAGAGGTCCGGAGG GGTACCATCAAACATGCTATTCTAGGACAGGTACAGTCTATGCCTTGCTG CATCAAGATTGATTATTGTGTTTATCAGTTTTGTGCAAGTCACGCACAGT ATGTTGTGCCGCCCGTATGCCGACAAACTAGAGTCAAGCAGTGGACTAGG ATATTGTGCGTTTGATCTTTGATTTTCATGTTCCTACTATTCTGTAAAAT TTGTATACTCTTCTCGCACTCAAGATTTTTTTTCGAAATTTTCTTATGCT ATAATCTTCAGATAACAATTTCAATAAACTTGGATATCTGACAGCGAAAC AAAGGCACCTTTACAATGTGCGTGTTGGCAATTGCTGTTCTATTGATTTG GTCTAGATGTTAATCATGAAATGGTCTCGCCTAAGTCTAAATGACAAGTG CACAAGGAAGCCATTCTAGCTTAGTTAGGACCTGTGCCTTATCGTGCACA ACCTTTTTACAATATATTGCAATATGACAGGAGAAAAAAGTATTGAAATG GAGACCCTAAACGTTAAGCTGAGTAGTAGTGAAGGTCCTGAACTTAGTCG CCCAGTATATCATGATTTACCGAGCGTAGAGCGTGCTATCACCAGAGACG TGAGTATACTCCCAAAATAGGGCAATACTGGTCGTACCTCCAATAATAAA CTTTCTCGATTATCATTGCAGTGTCAAGTGTGTTCTTTTTTGGATAATTC TAGTAGAATCCTAGGACTCGAGCAGTTCCATCCCACCAGAAAATAGTCGT CTCCTACAATCCCAATGAAGAAAGAGTGCAAGCAAAATATTGATTTCCTG GATATCTCCTTGTAGGACTCCATAGCTTAAACAGTTCAACAGTTCCATCC CACCAGAAGTTTGACATTCCAAGGCAAATCCCCACAGAGAGAAGAGTGAC ATCAAAATATTGATTTTCGACTCAAGCCTTGAAAAGAACTTGTTCTTCAT GGACAACTCGTTTAGATAGGGAGTGAAAGTATCTTGGAGGGTATGAGTTT TTCCATGTTTGTCCATTTGGGGCTTGGCCTCCCACGGGTTTTTTGTAACA TTTTACCTACTCCCAAATGTGTATGTTATGAAAAAGTGTGTCTGGAACAA GGATATTGACATCTTCTAACAAATATTGTAGCCAAAATTACATCCAAATT ACAACATTGGATTTTGGACCTCACATGGCAGCTGCTCTGCCCTTTGACTG TAGGATTAGCTTCCTTCACTCATAATGTTTTTTAAACTAACATTCTGTAT GTAATCATGATGGAAATAAGGAGCAACTCTTTAACTGACAGTTGGGTGGC ATTACAATTAATTTGCATAAGCGAGATAGGTGATAGTGTGGGCAAGAAAA TGGAAGCAAATTAATATGACTTTTTTGCCAATATAGTTTCATTATACTGG AATTTTCCTATCACGGCAAGGTTGATGCTGCAGCAGATTTAGACTTACAG GTTGACTCCTCGAAACAGATAAATTACGTCTATTGCCTGTGTCCTTAAAA TGCTACAACCTTTCTTCCCCGACTTCTCTGACTGCTCTGCTGTAAAAGAA TCATGTGCTATATAGCACCAATAGGATGTGATCACGTGCGCACCTCAAAA TTTGCGCGCACATGCAGACACACACATGCACACACAAGCACACACTTGCT CATACACTCACATACTAGTTTCTGTGTCCAATATTTTACAGTTAAGAAAC CCACCAGAAGGTTTTGAGGGCGTTATTCGTGCGCACTTTGCTTGCAAGCG GCGAATGGTCCTTAGCATGATTGACTCATGGGAGAGAAAAGTGAGGTCTC CTGGGGAGAAAGGAGCCCACTATGACAGCAACATGAAGAGTTTAACAAAG GCTGCCTGCCAAGACCTCCGTGACGAATATAAGCATCGTATGACAGTGGA GGAGGCCCGCAAAGATGTGGAAGTGAGTGGGACTTGCAAGCATTTCGTTG TGTCTTGTTCCAACTTTCATGTGTTCATCTCGGAATGTTAGTTTGTTACA TATTTGTATTGCGTACCTGCAACCAATTTGGCACAACTATATGAATGCAC TGTATATATTCCCATAATATAGTCATACAAATATTCTCCTTTATCTGATG GCGCTTGAAAATTTAATCACAACAACTTAGACTCATGGTAGATCCATGGG GATTATTCTTGTTGTCCCCAAACTTGGAGCATTTCCAGCTCACAGGTGGG ATATGGCCTCCCCATCATTTTCTCCCTTCAGCCTGATGGGCTCTGCAAAG GGACTCTGAAATGTTTCTAAGTAGAAGTGTTTTTCGATATTTCTTGCTTT GGTAAGTACGATTTTGATGGTCTATTTGTCCGTATCCCTTACTGTTACTA CAATGCCCTAAATACATTGCGACATCTATTGTTGACCAAAAAAATACTGT TCTCCTGCAACACCATGTTGTCCTTACAGGCAGCAAAAGCCGAGGTAGAG TATATTGAGATGAAGATGTTATTTCTCAGTCTTAAAGTCGCTGCTGCCGA AGATGAGGCAGGTACCAAGTGCCCAAAGGCGTGCGAACGTCTTAAGCTGG GGCCTGGTCTGCTTGAGGCCGCCAATGGTAAGCTGGTCGCTGCACAGACT ATCTTCCGACAATTGAGTGGAGTGGATAGCACAGTGCTAGAAGGGTGAAT CATTAGTTTCGAGAGTGGATACTTGTTTACTTGTGAGAAGTCAATAGCTT AGTATAGTGCGTGTGGTGTTGATTGCATCAACCTGGGTCTTACCCTGCAA TTCTTCAATAATAAGGTGGCTTTATCTGATACACATCTTGTCGGTGTCTC GCATTGTGCACCAAAGAATAAAATAAAAGGGAAAGTGGTATTTCACGTGT AGGATATTTCACTGAGTCTTGACCTAAACGGTTTTTTGTGTGCCTTTAAA TATATCTTAGTTGAAGGAATATGAGATGAGTTACAAACATGATAAAATGT CACAGAAATACATCAATATTATCATCGATTGCACAGTTTTTTGTTCTGAT CTTCCTGACCTCTGCAAAGACCGAGTCTTGACGCACGGAAATATATAACA AATTCCAAAACTTTCTCACTGCAAATTGTCATGGGTATCCTCTCCTGCTG TCATCATCCTTTTTGGCGTACGTTTACTCTGTTTTGAGCCATTCTATATT GAGCACCTGCTAATTAAAATTTTTAATAGTGCTCCCCTACTTGCATATCT ACTACTACTGTTGATACCATAACCACAGTCGGCTTATCACTCCAAGGAAT CCCCCACCATTGTGCTTCGCGATTGTGCTTGTAGAGCTTGTCTAGTTTAT CGAGATTGAGCCCTAAAGCGACTTCAGATCAGATAAGCTGAAGGAAACAA AATCAATGCCAAAGTCAACAAACGACAGATGTAGGAATACCTTGATTTGG GTCTACATAGTTGCGATTGCTGTGTTCTCTGAGCAAATATCACGTTTTCG AATGCTGCAGGTGTAGACATGAAGTAATTCGATAGTGCTGAGAATGTACT GACAGAAGCCACAATTATTTCTCCTCCAAGTTTCGACTAGCAGATAAAGT TTTCTAAAGTTGTGAGTTAGGGGGACTAGTTGTCAAGAAGTAAATGCGCA GGTTGGGTTACGGGCCCTCAAGAATATGATCAGGGTTCATTCATTGCAGG TTAGGTTATTCTACCCTCTCAAAGGTCATCAACAGAAATACAAACCAGAT CATATCTGTGTTTATCAGTTTCTTGTAGGACTCAAACATCGCTGTTTTTT TGGAGTCTAAAATAGGTCGGATCGAATTTTTTTCAAAAGCATACAAGTTA AAATGCAAGTACCCAGGCAACAGAAATGAGTTGAAGTTAATGGTTTGGAG ATCCTTATAACCATACCTGTTGAGGTATGCATGTTCATACCTGTACATAA CTTGACAAGAGGTGCTAAACTCTGCACAGATTACTTATTTCGAAATGATT TGATCATGGTGACGGAATTAGAGTTGTTCATTGGATCGTAGTGCTCATTT ACTTCTGCTTTTTTCTTGTAATTTTTTTCAACCAATATTTAGCATTCCGT TCTCTTTAAACGGAAGTTTACGCTTGTGGAGGTATCCACAACTGTTCCAA TCAAAAGGAAATGACACCTGTAATAGATTCCCACACACTGGTGATGTTGA TCGTGTTACAGGTGGATGCCAATGGCATGGTGCATATACACTGGCGCAAG TGAAATTATTGGGACAAATGAGTGCTGTTTTCTTGCACTATCTCAAGCCT ATCTTCCCTCACATGGCATGGTGTTGTGTCCACAGCATGTAAAGTTACAT ATATAAAGTAGTCCAGTACTGTATGGGAGACTATTGGATACCTTTAAACT ATTGAGGGCAGTTTTTTCACCATACTTCTTTTCTCTACAGCATTATGCTT GTGGAGAGCGTCGGTCTCACCAACATCTCTGAAGTATGTTTGCAAGTATT CCAGAACAAGTCGTCTTTGTCCATGTCAGGGAAGGGGGTTGCATTTCCAA TATTTGCCAACAAAACTTTCACACACAAGATTACACCTGTACACAATGAA TGTGTACTACCACCAGAAAGGTAACACCCATCCAATAAACCATTGAATCA ATCTTAATCTACAGGCATTGTTTGTAGCCTTTTACTCTTGATCGATCACC GTCAAGCCCCTTTATGCACAGAAGGGTGGTACCAGTTTCCCTTGATTACC CTTCTTCAAGGCCTAAGCTCTCAGTGAACAGGAGCAACGCCATCATTGGC AGCTTGGCATGTCTTTAGGAACTCCTCATATCGAAGTCCTGCCATGCAGT TATCATCCCAGCTGGCTGACCGCTTAGTGGAAAGTAAGAGAGGAGCAACT GGGTTCTGAGTCTTGACTTTGTGCCTGCAATGAAGGGGCAGTGATCCAAA AAAGTGTTGTTCTTGGATTCAATATGGTGGACTCGTCATTCCTGCAGTCT GATAGTCTTTAAAAAGCTTGAGAGATCAAGGAGGAGGAGAACATATTTTT TAGTTTGAACTCATGCCTATAATATTTTTATTCATATATCCCCTTGTACC CACCACTACAATCGGTGGTACAAAGTTCTCCCGACAGGTGTCATGTTTGC CCTTTTTTCACACTTGGAAGGTTCTTCTGAAATCGAAACAGCCAAAGTTT CTTGGAGGGTAGAGCCGCGTCCATTTGAGGTCCAAAATCCAATGTTGCAA TTTGGATGTAATTTTGGCTATTATGTTTGTTAGAAGATATCAATATCCTT GTTCCAGACACACTTTTTCATAACATAAACATTTTACCTACTCTGAAACA TTTTGGAGTAGGTAAAATGTTGGAAAAAACTGGTGGGAGACCAAGCCCCA AATGGACTAACATGGAAAAACTCATACCCTCTAAATTACTTTCACTCAAA ATAAAGCATCCTTGAACAGGGTCAAAGTATCTGGGGGGGGGGGGTGGCGG CTGTCCATTTGGGGTCAATTTTTTCATGTAGCGTTTTTTGTGCGGTTTGG TTGCAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8251:742..6397+

>mRNA_C-tenellus_contig8251.1.1 ID=mRNA_C-tenellus_contig8251.1.1|Name=mRNA_C-tenellus_contig8251.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=576bp|location=Sequence derived from alignment at C-tenellus_contig8251:742..6397+ (Choristocarpus tenellus KU2346)
ATGGAGCCAGGTCATGGGGGATGGGAGGGTACGATGCCATCAGCTCATAG
TGTGCATGATCCGAAGGTGATATGGTACACGGAAGAGGTCCGGAGGGGTA
CCATCAAACATGCTATTCTAGGACAGTTAAGAAACCCACCAGAAGGTTTT
GAGGGCGTTATTCGTGCGCACTTTGCTTGCAAGCGGCGAATGGTCCTTAG
CATGATTGACTCATGGGAGAGAAAAGTGAGGTCTCCTGGGGAGAAAGGAG
CCCACTATGACAGCAACATGAAGAGTTTAACAAAGGCTGCCTGCCAAGAC
CTCCGTGACGAATATAAGCATCGTATGACAGTGGAGGAGGCCCGCAAAGA
TGTGGAAGCAGCAAAAGCCGAGGTAGAGTATATTGAGATGAAGATGTTAT
TTCTCAGTCTTAAAGTCGCTGCTGCCGAAGATGAGGCAGGTACCAAGTGC
CCAAAGGCGTGCGAACGTCTTAAGCTGGGGCCTGGTCTGCTTGAGGCCGC
CAATGGTAAGCTGGTCGCTGCACAGACTATCTTCCGACAATTGAGTGGAG
TGGATAGCACAGTGCTAGAAGGGTGA
back to top