mRNA_C-tenellus_contig825.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI) HSP 1 Score: 196 bits (499), Expect = 8.900e-55 Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = 1 Query: 115 QSLLLCPHHLFCLF-RYIEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTLIEKDPLPSRLDVPLLRRVTAEFNQVQTQMQ 555 Q+ L + + LF RY+EGLRHEFDE RR PPLRPNEP FAGSA+WAHSLAR VEE+W+HLKNC++MA+++ SDEAE +L L A KEA+AAY VFVTVI DFK NRYQAWVDHLN++IE PL RLDVPLLRR + +VQTQ Q Sbjct: 642 QACLKKTAYTYMLFVRYVEGLRHEFDENRRRPPLRPNEPPFAGSAVWAHSLARGVEEAWSHLKNCRHMAKAMASDEAEAALCLGACKEAQAAYTVFVTVIGDFKANRYQAWVDHLNSVIEVMPLGVRLDVPLLRRADTD-PRVQTQQQ 788
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.920e-31 Identity = 75/156 (48.08%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 160 YIEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAE-----MSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLN-TLIE-------------------------KDP--LPSRLDVPLLRRVTAE 528 Y+ GLR EFDE+RR+PPL PNEP FAGSALW SLA++ E SW +KNCK+MAR+ A ++ ++A +AEAA+ F +IADFK RYQAWVDHL TL++ K P L RLDVPLLRR TAE Sbjct: 485 YVGGLRREFDERRRAPPLGPNEPQFAGSALWGASLAKMAEASWELVKNCKHMARAAEGRLASNFNFNLNFIMTAAHDAEAAHTAFAAIIADFKAARYQAWVDHLTATLLDGGSGXXXXXXXXXXXXXXXXXXXDAKKPAALGGRLDVPLLRRATAE 640
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A7S1XL19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL19_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.380e-20 Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 142 LFCLFR-YIEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVD 450 +F LFR +E R EFD +R PPLR NEP +AGSALWA SL L EESW L + R D+AE +AYN F+ V+ DFK RYQAWV+ Sbjct: 38 IFVLFRTQVEKRRFEFDNNKRDPPLRANEPQYAGSALWARSLGALEEESWTALHSSTLGFRGREFDDAE------------SAYNSFIAVLHDFKEFRYQAWVE 129
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A7S3JQB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQB6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 6.970e-19 Identity = 52/129 (40.31%), Postives = 78/129 (60.47%), Query Frame = 1 Query: 145 FCLF-RYIEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCK-YMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHL---NTLIEKDPLPSRLDVPLLRR 516 + LF + +E LR FDE+RR PPLR NEP FAG+ALWA SLAR+V ++W L Y+ + +D+ E+ AY + V+ D+K +RY+ WV L +++I + L S+L++PL+RR Sbjct: 210 YALFTKTVESLRQVFDEQRREPPLRANEPKFAGAALWASSLARVVRDAWVLLHEASSYLTKMREADDGEV------------AYVQLLAVLNDYKASRYKEWVQSLEAHSSMIGESNLLSKLEIPLMRR 326
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A7S4EBF2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBF2_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 5.350e-17 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 142 LFCLFRY-IEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTLIEKDPLPSRLDVPLLRR 516 L+ LF + +E +R EFDE RR+PPLR +EP +AGSALWA +LA+ VE SW+ L+ Y + S KEAE AY + V+ ++ Y+ WV + L + L ++LD PL++R Sbjct: 14 LYLLFIHDVEEVRREFDENRRAPPLRNDEPRWAGSALWATALAQNVEHSWSLLQAATYF------------MPTSETKEAEIAYKALMGVVDEYMAGCYKNWVGSMGAL-DSSTLQAKLDKPLMKR 126
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A7S4EBE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBE8_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.040e-16 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 142 LFCLFRY-IEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTLIEKDPLPSRLDVPLLRR 516 L+ LF + +E +R EFDE RR+PPLR +EP +AGSALWA +LA+ VE SW+ L+ Y + S KEAE AY + V+ ++ Y+ WV + L + L ++LD PL++R Sbjct: 512 LYLLFIHDVEEVRREFDENRRAPPLRNDEPRWAGSALWATALAQNVEHSWSLLQAATYF------------MPTSETKEAEIAYKALMGVVDEYMAGCYKNWVGSMGAL-DSSTLQAKLDKPLMKR 624
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A8J2WYK5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK5_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.170e-16 Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 142 LFCLFRY-IEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTLIEKDPLPSRLDVPLLRR 516 L+ LF + +E +R EFDE RR+PPLR +EP +AGSALWA +LA+ VE SW+ L+ Y + S KEAE AY + V+ ++ Y+ WV + L + L ++LD PL++R Sbjct: 538 LYLLFIHDVEEVRREFDENRRAPPLRNDEPRWAGSALWATALAQNVEHSWSLLQAATYF------------MPTSETKEAEIAYKALMGVVDEYMAGCYKNWVGSMGAL-DSSTLQAKLDKPLMKR 650
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A6H5KP60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP60_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.360e-15 Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 Query: 367 VKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTLIEKDPLPSRLDVPLLRRVTAEFNQVQTQMQ 555 V+EA+AAY VFVTVI DFK NRYQAWVDHLN++IE PL +RLDVPLLRR + VQTQ Q Sbjct: 121 VREAQAAYTVFVTVIGDFKANRYQAWVDHLNSVIEVMPLGARLDVPLLRRADTDPG-VQTQQQ 182
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A482RZ06_9ARCH (DHC_N1 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RZ06_9ARCH) HSP 1 Score: 80.5 bits (197), Expect = 2.660e-14 Identity = 45/128 (35.16%), Postives = 73/128 (57.03%), Query Frame = 1 Query: 136 HHLFCLFRYIEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTLIEKDPLPSRLDVPLLRRV 519 +H+F + ++ +R EF+ R +PPLR +EP +AGSALWAHSL+ +++ + +L +Y+ E G E++ + VI DFK +RY W++ LN + + L RL+ PLLRR+ Sbjct: 606 NHMFD--KEVQTIRSEFELARLNPPLRLHEPQYAGSALWAHSLSVIIKHDYDYLVRLQYVL-------TERDFG-----ESKEDFLSLAQVIQDFKQSRYNLWLEDLNNKAKDNGLQMRLEKPLLRRL 719
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Match: A0A2R5GWD4_9STRA (Dynein heavy chain 2, axonemal n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWD4_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 4.010e-12 Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 142 LFCLF-RYIEGLRHEFDEKRRSPPLRPNEPWFAGSALWAHSLARLVEESWAHLKNCKYMARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTLIEKDPLPSRLDVPLLRRV 519 +F LF R ++ +R EFD+ R SPPLR +EP FAG+ALWA L + W+ L + + EAE E +++Y+ V V+ D+ YQ W+ ++ L + L +L++PL+ RV Sbjct: 668 VFQLFGRELDQIRLEFDQFRASPPLRADEPRFAGAALWARGLQERADRDWSLLHGASHFLAK--TREAE---------EVKSSYDTLVQVLEDYAMKMYQDWMSQMHGLDQSHML-QKLEIPLMSRV 782 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig825.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig825.2.1 >prot_C-tenellus_contig825.2.1 ID=prot_C-tenellus_contig825.2.1|Name=mRNA_C-tenellus_contig825.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp MARSLVSDEAEMSLGLSAVKEAEAAYNVFVTVIADFKNNRYQAWVDHLNTback to top mRNA from alignment at C-tenellus_contig825:4127..6074+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig825.2.1 ID=mRNA_C-tenellus_contig825.2.1|Name=mRNA_C-tenellus_contig825.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1948bp|location=Sequence derived from alignment at C-tenellus_contig825:4127..6074+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig825:4127..6074+ >mRNA_C-tenellus_contig825.2.1 ID=mRNA_C-tenellus_contig825.2.1|Name=mRNA_C-tenellus_contig825.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig825:4127..6074+ (Choristocarpus tenellus KU2346)back to top |