mRNA_C-tenellus_contig8242.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8242.1.1
Unique NamemRNA_C-tenellus_contig8242.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: D7FPK2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK2_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.040e-68
Identity = 108/147 (73.47%), Postives = 124/147 (84.35%), Query Frame = 1
Query:    1 SRHFIQDETMRTLFGLVPFYGGGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQHACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGASPQV 441
            +RH+I+DETMRTLFGLVPFYGG +GPMD MVK+TLASV+   IDVR++ G+TLLIL CQH CEDLVEPILAKGA+P A N VG+ ALHY C+ DS S DA EALLWRGA+ ST ETTYGCTPLHYAA SGD E+CALL+EHGA P+ 
Sbjct:   53 NRHYIKDETMRTLFGLVPFYGGDDGPMDQMVKATLASVRPDAIDVRNEAGDTLLILACQHGCEDLVEPILAKGANPTAVNAVGICALHYTCFADSLSYDAAEALLWRGAETSTAETTYGCTPLHYAASSGDAEICALLVEHGAQPKT 199          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: A0A6H5L077_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L077_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 9.090e-62
Identity = 107/181 (59.12%), Postives = 123/181 (67.96%), Query Frame = 1
Query:    4 RHFIQDETMRTLFGLVPFYGGGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQHACE-----------------------------------DLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGASPQV 441
            RH+I+DETMRTLFGLVPFYGG +GPMD MVK+TLASV+   IDVR++ G+TLLIL CQH CE                                   DLVEPILAKGA+P A N VG+ ALHY C+ DS S DA EALLW+GA+ ST ETTYGCTPLHYAA SGD E+CALL+EHGA P+ 
Sbjct:    4 RHYIKDETMRTLFGLVPFYGGDDGPMDQMVKATLASVRPDAIDVRNEAGDTLLILACQHGCEVRLVETYRLRQPHAGLKTTLCSSVLECGFHKFQALDLVEPILAKGANPTAVNAVGICALHYTCFADSLSYDAAEALLWKGAETSTAETTYGCTPLHYAASSGDAEICALLVEHGAQPKA 184          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: A0A482SRH0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRH0_9ARCH)

HSP 1 Score: 149 bits (376), Expect = 4.550e-39
Identity = 69/136 (50.74%), Postives = 91/136 (66.91%), Query Frame = 1
Query:   22 ETMRTLFGLVPFYGGGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQHACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGA 429
            E +  L   +PFYG G+   D +V+S L+S+   +ID +D+ GNTLL+L CQ+ CEDL   ++ KGA+P A N  G S LH+ACY DSSS    + LL  GA+P   E+ YGCTPLHY AGSGD E C L+L++GA
Sbjct:  102 EPVDVLLQFIPFYGQGDPANDSIVRSALSSLSIEDIDAKDEYGNTLLLLACQYRCEDLARIMINKGANPNAVNTAGASCLHFACYQDSSSLPIAKVLLQNGANPDVAESNYGCTPLHYCAGSGDLEFCKLILQYGA 237          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: D7FMA5_ECTSI (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.570e-33
Identity = 67/141 (47.52%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   16 QDETMRTLFGLVPFYGGGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQHACEDLVEPILAKGADPL---ATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGA 429
            Q++ ++ L   +P+ G G+   D MV+S L++  A  +  RD  GNTLLIL CQ+ C+ LV  ILA+G   +   A N  G  ALH+ACY DS        LL RGA+P  +E TYGCTPLHYAAG+GD  LC  L+E GA
Sbjct:  113 QEDKLKLLVEFIPYVGLGDATRDNMVRSILSAADAEELVGRDDYGNTLLILACQYRCKALVPLILARGGGAIDVDAVNSEGACALHFACYKDSVCAQTAVLLLERGAEPEVVEKTYGCTPLHYAAGAGDVNLCKRLIEKGA 253          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: A0A7S3HTU3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTU3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 8.720e-31
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  100 TLASVKASNIDVRDQEGNTLLILVCQHACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGA 429
            TL+++   +ID +D+ GNTLL+L CQ+ CEDLV  +L KGAD  A N  G   LH+ACY +S+S    + LL  GADP   E+T+GCTPLHY AG+GD E C LLL +GA
Sbjct:    1 TLSALSVEDIDSQDEYGNTLLLLACQYRCEDLVRIMLNKGADANAVNSSGACCLHFACYRESASIGVAKILLKSGADPDVAESTFGCTPLHYCAGTGDIEFCKLLLSYGA 110          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: X0X1N5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0X1N5_9ZZZZ)

HSP 1 Score: 111 bits (278), Expect = 2.240e-27
Identity = 56/142 (39.44%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   19 DETMRTLFGLVPFYGGGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQH---ACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGASP 435
            ++ +  L  ++P++  G+  +D +VK T+  +   N++ RD++GN+LL L+C H   ACE L+  +++KG+DP A N  G + LH+  Y D+ S +  + L+  GA+    E  +GCT LHYAA  GD +LC +LLE GASP
Sbjct:   59 EQMVEILQEIIPYFNQGDVNIDEIVKDTIERLPLDNLENRDKDGNSLL-LICSHFSGACE-LIPLLISKGSDPNAQNTFGETCLHFTSYTDTYSPETAKVLVLNGANAEVQEIRFGCTALHYAASIGDTDLCRILLEGGASP 198          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: A0A7S0XEW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEW9_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.320e-26
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  163 ILVCQHACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGA 429
            +L CQ+ CEDLV  ++ KGADP A N +GVS+LH+ACY +SSS +  + LL  GA+P   E+TYGCTPLHY AG+GD   C LL+ +GA
Sbjct:    1 LLACQYKCEDLVRIMINKGADPNAVNNLGVSSLHFACYRESSSINIAKLLLQFGANPEVKESTYGCTPLHYCAGTGDLPFCKLLITYGA 89          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: A0A835YY32_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY32_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.510e-25
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   37 LFGLVPFYGGGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQHACEDLVEPILAKGA-DPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGASPQVC 444
            LF  +P+YG G+  +D  V++ + +     +   D  GNTLLIL  Q+   +L+  ILAK   D  A N  G  ALH+AC+  S       AL+  G+    +E TYGCTPLHYAAGSG  +LC  L+  GA    C
Sbjct:    1 LFDFIPYYGAGDASVDGRVRAMVQAAGQEELCGIDHYGNTLLILAAQYKAGELMHAILAKDCIDVNAVNDAGACALHFACFSASLDVLVARALIANGSKVRVVERTYGCTPLHYAAGSGHVDLCKDLVAAGAIVATC 137          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: A0A835YP16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP16_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.040e-22
Identity = 58/149 (38.93%), Postives = 75/149 (50.34%), Query Frame = 1
Query:   16 QDETMRTLFGLVPFYGGGEG-----------PMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQHACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPSTIETTYGCTPLHYAAGSGDEELCALLLEHGA 429
            +D+ +  LF L+P  G G+G                    LA+++ + ID RD+ G TLL   CQH C DLV P+LA+GA   A +G G + LHYA Y  ++   AV ALL  GADP+  E  Y              E CALLL HGA
Sbjct:  182 RDDGLCALFELLPLCGDGDGGXXXXXXXXXXXXXXXXXXXLATLRPTAIDTRDEGGGTLLTRACQHHCWDLVAPLLARGAAAAAADGAGAAPLHYAAYAGAAGAPAVRALLRAGADPAAREPAYXXXXXXXXXXXXXXEACALLLAHGA 330          
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Match: UPI000C71969A (ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71969A)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-9
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 1
Query:   64 GGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQHACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGADPST-----IETTYGCTPLHYAAGSGDEELCALLLEHGASPQV 441
            G E  ++++ + +    +   +DV+D+ GNT L       CE+L+E +L K A+P   N  G++ LH  C  +S++ D V  L     +        ++   G TPLHYAA    E L  LLL   A+P +
Sbjct:  297 GDEDSVNMLFELSNGKYQPVQVDVQDKLGNTPLHYAAYEFCENLMELLLRKDANPNLANVEGLTPLHIVCIGNSNNIDLVNMLFELSNEKYQPVQVDVQDKLGNTPLHYAAYEFCENLMELLLRKDANPNL 427          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8242.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK2_ECTSI1.040e-6873.47Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L077_9PHAE9.090e-6259.12Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A482SRH0_9ARCH4.550e-3950.74Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
D7FMA5_ECTSI4.570e-3347.52Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
A0A7S3HTU3_9STRA8.720e-3153.64Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
X0X1N5_9ZZZZ2.240e-2739.44Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7S0XEW9_9STRA3.320e-2656.18Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A835YY32_9STRA1.510e-2540.88Ankyrin repeat-containing domain protein (Fragment... [more]
A0A835YP16_9STRA5.040e-2238.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000C71969A1.470e-931.30ankyrin-1-like n=1 Tax=Trichogramma pretiosum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8242contigC-tenellus_contig8242:5050..6383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPK2
PFAMsAnk_2,Ank_4,Kinesin,Microtub_bd
Model size447
Max annot lvl2759|Eukaryota
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.77e-64
EggNOG OGsCOG0666@1|root,COG5059@1|root,KOG0239@2759|Eukaryota,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size420
COG categoryI
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790089.957318-UTR-C-tenellus_contig8242:5049..50761680790089.957318-UTR-C-tenellus_contig8242:5049..5076Choristocarpus tenellus KU2346UTRC-tenellus_contig8242 5050..5076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790089.971098-CDS-C-tenellus_contig8242:5076..52381680790089.971098-CDS-C-tenellus_contig8242:5076..5238Choristocarpus tenellus KU2346CDSC-tenellus_contig8242 5077..5238 +
1680790089.9825819-CDS-C-tenellus_contig8242:6125..63831680790089.9825819-CDS-C-tenellus_contig8242:6125..6383Choristocarpus tenellus KU2346CDSC-tenellus_contig8242 6126..6383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8242.1.1prot_C-tenellus_contig8242.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8242 5077..6383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8242.1.1

>prot_C-tenellus_contig8242.1.1 ID=prot_C-tenellus_contig8242.1.1|Name=mRNA_C-tenellus_contig8242.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=140bp
MRTLFGLVPFYGGGEGPMDLMVKSTLASVKASNIDVRDQEGNTLLILVCQ
HACEDLVEPILAKGADPLATNGVGVSALHYACYVDSSSRDAVEALLWRGA
DPSTIETTYGCTPLHYAAGSGDEELCALLLEHGASPQVC*
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mRNA from alignment at C-tenellus_contig8242:5050..6383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8242.1.1 ID=mRNA_C-tenellus_contig8242.1.1|Name=mRNA_C-tenellus_contig8242.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1334bp|location=Sequence derived from alignment at C-tenellus_contig8242:5050..6383+ (Choristocarpus tenellus KU2346)
TCAAGACATTTCATCCAGGATGAGACTATGCGGACACTTTTTGGACTAGT ACCCTTCTATGGAGGGGGTGAAGGGCCAATGGATCTAATGGTGAAATCAA CACTAGCAAGTGTGAAGGCCAGTAACATTGATGTCAGAGACCAAGAAGGA AACACCCTTCTCATCCTTGTGTGTCAACATGCCTGTGAGGTAAGGGCTAT GACACTCTGCAGTATTGTCTTTCTCGTCTTATTTCCCAAACAAAGTATTG CATACTTCACACGAACACGTGGGGATGAGTTATTAGATGGGTCTGACATC GATGCTGAATGTTCCTTTTTCGTTTTCTTCTGATTTTGAACAATGTCTAC ATGTGCATTTACATTGCTACTCAGCCAGCAACTGGACTTCCACACCCTCC AATTTAGGTCGCCAGCCAAGAAAAGTTGTTTAAATCGATGGCAGGCGCAG TTGTAGTTGTTGTGGCCACCTCAACCCCTTAAAGATATGCAAGAAGGGCA GTAACAAAAGCTGCAAGAAGAAATTTTGTCTGGATATGCAAAATAACTCT CTTGTATGATAGGAACTCAAGACACCCCGTACTTCATGTAAAGAGTAATT ATCATACAAGGTAATTATGAGTGAAAGTATCTTAGAGGGTACGAGTTTTA TCCTGTTTGTCCATTTGGGGCTTGGCTTCCCACGGGGTTTTTATGACATT TTGCCTACTCCAAAATGTTTCGGAGTATGTAAAATGCATACATCTTGAAA AGGTGTGTCTGGAACAAGGAAATGGACATCTCCTAACAAACATCATAACC AAATTACATCAAAATTGCAACATTGGATTTTGGCCTCCAAATGGATGCGG CACTACCCTATAAGATACTTTGACTCTATATTCCCCCATTTCCTCATTGT CCTCAGCAAGGACACAACCAGTATAATTGAAATATCACTCTTTCTGCTAG GCATATGATAAAACAGTAGAGAGAGCAATCCATGGATTAGTTTCACCTAC ACATAGCACTCCAATCCTCCCGTCTTCCTCTTTGGGCTCTTTAACCTCTG ATCACGAATTGCATGGTAACCTGCAGGACCTAGTGGAACCCATTCTGGCC AAGGGAGCTGACCCTCTTGCGACCAATGGAGTCGGTGTAAGTGCCCTCCA TTATGCATGCTATGTGGACTCCTCATCAAGAGATGCGGTGGAAGCACTGC TATGGCGAGGGGCAGACCCTTCCACAATAGAGACAACTTATGGGTGTACA CCCCTTCATTACGCAGCAGGTTCTGGAGACGAGGAGCTGTGTGCTCTGCT GCTTGAGCATGGTGCTAGTCCTCAGGTTTGTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig8242:5050..6383+

>mRNA_C-tenellus_contig8242.1.1 ID=mRNA_C-tenellus_contig8242.1.1|Name=mRNA_C-tenellus_contig8242.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=420bp|location=Sequence derived from alignment at C-tenellus_contig8242:5050..6383+ (Choristocarpus tenellus KU2346)
ATGCGGACACTTTTTGGACTAGTACCCTTCTATGGAGGGGGTGAAGGGCC
AATGGATCTAATGGTGAAATCAACACTAGCAAGTGTGAAGGCCAGTAACA
TTGATGTCAGAGACCAAGAAGGAAACACCCTTCTCATCCTTGTGTGTCAA
CATGCCTGTGAGGACCTAGTGGAACCCATTCTGGCCAAGGGAGCTGACCC
TCTTGCGACCAATGGAGTCGGTGTAAGTGCCCTCCATTATGCATGCTATG
TGGACTCCTCATCAAGAGATGCGGTGGAAGCACTGCTATGGCGAGGGGCA
GACCCTTCCACAATAGAGACAACTTATGGGTGTACACCCCTTCATTACGC
AGCAGGTTCTGGAGACGAGGAGCTGTGTGCTCTGCTGCTTGAGCATGGTG
CTAGTCCTCAGGTTTGTTAG
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