mRNA_C-tenellus_contig8221.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8221.1.1
Unique NamemRNA_C-tenellus_contig8221.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: D8LCC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC8_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 4.340e-81
Identity = 143/220 (65.00%), Postives = 167/220 (75.91%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDPNIEVCSFWRSFEENDDLGLNDINTDNYERCEGGRELAKVME--------EEDEEEDAPRRLPHRVENDHPAPFTKGQEEQDDT 638
            VKGGGAIP KGT+YTL A S  DF RDVLKSDTA+L IP+L+LVMEMGTLGSMYT++EGLL KAR +LVEGNPF+ GDS+T HHGKES+ QRKFR FLERF  LI G++ PFTLV+RDPLGNSFIGS EHE+PADDP + V  F R+FEEN++LGLND+NTD++E    G     V +        +E   E A   +PHRV  DHP  FTKGQEE DDT
Sbjct:  350 VKGGGAIPPKGTAYTLEAVSKDDFRRDVLKSDTAVLEIPQLELVMEMGTLGSMYTTVEGLLEKARTSLVEGNPFFSGDSATAHHGKESDVQRKFRIFLERFGALIAGESLPFTLVVRDPLGNSFIGSSEHENPADDPQMTVEWFERTFEENEELGLNDMNTDDFETLPEGYVRPPVAQPGSSGAPGQEGGGEGATHLIPHRVGTDHPTAFTKGQEEADDT 569
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A836CEY4_9STRA (ZPR1 zinc-finger domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY4_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.410e-50
Identity = 90/137 (65.69%), Postives = 107/137 (78.10%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDP 413
            VKGGG +P +GT + LTA S KDF RD+LKSD+  + +PEL+L M+MGTLGSMYT++EGLL K R NL EGNPFY GDS+T HHG E   Q KFR FLE+   L  G+ FPFTLVLRDPLGNSFIG+L ++DPADDP
Sbjct:  298 VKGGGEVPLQGTMHKLTAISPKDFARDILKSDSCAIELPELELEMDMGTLGSMYTTIEGLLEKIRNNLCEGNPFYSGDSATHHHGSEGATQVKFRVFLEKLDALRDGQHFPFTLVLRDPLGNSFIGALGYDDPADDP 434
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A7S4DIZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIZ4_HETAK)

HSP 1 Score: 178 bits (451), Expect = 1.320e-47
Identity = 108/211 (51.18%), Postives = 130/211 (61.61%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHH----GKESENQRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDPNIEVCSFWRSFEENDDLGLNDINTDNYERCEGGRELAKVMEEEDEEEDAPRR--LPHRVENDHPAPFTKG 617
            +KGGGAIP KGT  TL   S  DF RD+LKSD+A +NIPEL+L M  G+LG MYT+LEGLL K R NL EGNPF  GDS+T HH    G  +  + +F  F+ R Q +I  K  PFTL L DPLGNSFIGS   E+  +DP I    + RS EEN+DLGLND+ T+ YE  E G       E   +E   P R  + H+   DHP  F KG
Sbjct:  133 IKGGGAIPDKGTKMTLRVESEGDFARDILKSDSAGVNIPELELEMAAGSLGGMYTTLEGLLAKMRKNLEEGNPFAAGDSATKHHAPADGPGAATRDRFLAFMGRLQDVIDKKVLPFTLELVDPLGNSFIGS-RLENFLEDPQIHSEDYERSHEENEDLGLNDMKTEGYEEGEPGAVETTGTEAPKKEPILPDRVVMAHKRGPDHPHQFAKG 342
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A7S2XY77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY77_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.030e-44
Identity = 104/211 (49.29%), Postives = 132/211 (62.56%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKFRE---FLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPA---DDPNIEVCSFWRSFEENDDLGLNDINTDNYERCEGGRELAKVMEEEDEEEDAPRRLPHRVENDHPAPFTKG 617
            VKGGGAIP +G   TL A S KD  RDVLKSD+A ++IPEL++ ME G+LG +YTS+EGLL K R NL+EGNPF  GDS+  HH      QR   E   FL++ + +  GK  PFTL ++DPL NSFIG    +      DDP I+V  + RSF+EN+DLGL+DINT+NY    G  ++   +E+       P   P  V  DHP  FTKG
Sbjct:  295 VKGGGAIPPRGCKTTLRAESEKDLQRDVLKSDSAGISIPELEMEMEAGSLGGLYTSVEGLLVKMRENLLEGNPFTRGDSAVQHHDTSGNQQRARGEMDRFLQKLEDVKNGKVLPFTLEVKDPLANSFIGPRRDDTRGNIRDDPLIQVEEYERSFQENEDLGLHDINTENY--AVGSSQVEVEVEQ-------PVVGPTEV-ADHPHHFTKG 495
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A7S1XW72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW72_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.500e-39
Identity = 88/221 (39.82%), Postives = 126/221 (57.01%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQ---------------RKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIG-SLEHEDPADDPNIEVCSFWRSFEENDDLGLNDINTDNYERCEGGRELAKVMEEEDEEEDAPRRLPHRVENDHPAPFTKG 617
            +KGGGAIP KG   TL   S  D  R+ LKSDTA + IPE++L +  GTLG MYT++EG L K +G++V+ NP   GDS+  HH  E+E +               R+F +F+ + + ++ G+ FPFTL+++DPL NSFIG +L    P  D  +    + RS EENDDLG++D+  D+YE     + L   +              H+V +DHP PF +G
Sbjct:   88 IKGGGAIPDKGRITTLRVLSENDMRREFLKSDTAGIYIPEIELELTAGTLGGMYTTVEGALAKIKGSIVDDNPLIAGDSTVKHHEGENEGEGNADNAEESGLGVRRRRFDDFVAQLEDVVEGRRFPFTLIVKDPLANSFIGLALGAATPEADVQLSTAEYERSEEENDDLGISDMVVDDYEMPAVEQRLGIGL--------------HKV-SDHPTPFYRG 293
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A7S4A1G6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A1G6_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.760e-36
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSL----------EHEDPADDPNIEVCSFWRSFEENDDLGLNDIN 482
            VKGGGA+P KG   TL      D  RDVLKSDTA + IPELDL +  GTLGS+YT+LEG L K    L+ GNPF  GDS+      E+EN+RKF  FL+R + L  GK FPFT++++DPL NSFIG            E  +   DPN+ V  + R+F+E+++LGLNDIN
Sbjct:  288 VKGGGAVPLKGCRATLKCVDEGDLLRDVLKSDTAAVTIPELDLELVHGTLGSVYTTLEGCLDKIVDALLRGNPF--GDSA------ETENRRKFEAFLDRVRALRDGKVFPFTVIMQDPLANSFIGPRRDAASFSPISEAGEAPPDPNLTVEDYDRTFDEDEELGLNDIN 449
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A4D9D461_9STRA (Zpr1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D461_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.270e-35
Identity = 94/238 (39.50%), Postives = 129/238 (54.20%), Query Frame = 3 
Query:    6 KGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVME-----------------MGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESEN-------------QRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDPNIEVCSFWRSFEENDDLGLNDINTDNYE---RCEGGRE-LAKVMEEEDEEEDAPRRLPHRVENDHPAPFTKG 617
            +GGGAIP +G    L      D  RDVLK DTA ++IPEL+L +                  +G+LG  +TS+EGLL K R +L EGNPF +GDS+  HH  E E              Q +FR F+ R   L+ G++FPFTL LRDPLGNSFI S + + PA D  +   S+ RS++E++ LGL+D+ T+ +E     +GG+E L   ++            PH    DHP  FT+G
Sbjct:  138 QGGGAIPPQGVLTCLLVEGQDDLARDVLKGDTAGIHIPELELEITQAKTLPPSXXXXXXXFPLGSLGGFFTSVEGLLGKIREHLQEGNPFGMGDSAVKHHLGEEEGKEGGGGKAEGKTLQERFRVFMRRLDDLVEGRSFPFTLELRDPLGNSFI-SFQGDSPAADTRLTTESYTRSWDEDEQLGLHDMATEGFETGYEGQGGKESLRSTLQTH----------PHVHGGDHPIHFTRG 364
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A7S2DCU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCU7_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.410e-35
Identity = 80/220 (36.36%), Postives = 121/220 (55.00%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDPNIEVCSFWRSFEENDDLGLNDINTDNYERCEGGRELAKVMEEEDEEEDAPRRLPH-RVENDHPAPFTKGQEEQDDTKPSPILA 659
            VKGGG +P  G    L   +  D  RDVLKSD+A++ +P++D     G+LG +YT++EGLL K  G +    PFY GDS     GK+   + K+  F ++   +  G+  PFTL LRDPL +SFIGSL+   P  DP + V  + RS++E+++ G+ND+N    E   GG E+    +    + +    + H R   DHP  + KG ++     P  ++A
Sbjct:   19 VKGGGGVPASGQLTVLRVETESDLRRDVLKSDSAVICLPDMDFEAAQGSLGGVYTTVEGLLKKVHGAMTHSQPFYAGDS-----GKDDTLRSKWTAFTDKLSEIADGQGMPFTLTLRDPLASSFIGSLDGLPPDQDPQVTVTDYTRSWDEDEEYGINDMNAS--EGGGGGAEITIPSDSGVAQANPNLAMTHVRSGEDHPREYAKGCDDGVRVVPGKVVA 231
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: K1PKN0_CRAGI (Zinc finger protein ZPR1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1PKN0_CRAGI)

HSP 1 Score: 141 bits (355), Expect = 9.610e-34
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDPNIEVCSFWRSFEENDDLGLNDINTDNYE 497
            VKGG  I  KGT  TL  T + D  RDVLKSDTA + IPELD   EMGTLG  +T+LEGLL   +G L + NPF+ GDSS      + E   K   F +  Q++I G+      +L DP GNS++ ++   DP  DP + +  + R++E+N+DLGLND+ T+NYE
Sbjct:  273 VKGGSGIEPKGTKITLKITDTSDMSRDVLKSDTASMAIPELDFCAEMGTLGGRFTTLEGLLEGIKGQLSDSNPFFKGDSS------DKERASKIEIFCQEVQKIISGERLGDHFILDDPAGNSYLQNVYAPDP--DPEMTIEQYERTYEQNEDLGLNDMKTENYE 429
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BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Match: A0A1R1XLM3_9FUNG (Zinc finger protein zpr1 n=4 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XLM3_9FUNG)

HSP 1 Score: 139 bits (351), Expect = 4.490e-33
Identity = 74/164 (45.12%), Postives = 105/164 (64.02%), Query Frame = 3 
Query:    3 VKGGGAIPKKGTSYTLTATSSKDFHRDVLKSDTAILNIPELDLVMEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKFREFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDPNIEVCSFWRSFEENDDLGLNDINTDNY 494
            +K GGAI ++GT  +LT T+ +D  RD+LKS+T  LNIPE+DL +  GTLG  +T++EGLL +    L    PF  GDSST         + KF  FL + +     + FP TL+L DP+ NS++ +L    P DDPN+++  + R+F++N+DLGLNDIN DNY
Sbjct:  292 IKSGGAISERGTKISLTLTTPEDLSRDILKSETCGLNIPEIDLQLTYGTLGGRFTTIEGLLRQVYDELNRDTPF-TGDSST------ESRRSKFASFLAKLEATFTAQNFPVTLILDDPVSNSYVQNLYA--PDDDPNMKIEVYERTFDQNEDLGLNDINVDNY 446
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCC8_ECTSI4.340e-8165.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CEY4_9STRA7.410e-5065.69ZPR1 zinc-finger domain-containing protein (Fragme... [more]
A0A7S4DIZ4_HETAK1.320e-4751.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XY77_9STRA1.030e-4449.29Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1XW72_9STRA3.500e-3939.82Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4A1G6_9STRA5.760e-3650.59Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A4D9D461_9STRA3.270e-3539.50Zpr1 domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S2DCU7_9STRA8.410e-3536.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K1PKN0_CRAGI9.610e-3446.06Zinc finger protein ZPR1 n=2 Tax=Crassostrea gigas... [more]
A0A1R1XLM3_9FUNG4.490e-3345.12Zinc finger protein zpr1 n=4 Tax=Smittium culicis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8221contigC-tenellus_contig8221:795..4777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCC8
Preferred nameZPR1
PFAMszf-ZPR1
Model size1356
Max annot lvl2759|Eukaryota
KEGG koko:K06874,ko:K09025
KEGG Pathwayko03320,map03320
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000083,GO:0000086,GO:0000226,GO:0000278,GO:0001701,GO:0001763,GO:0001824,GO:0001832,GO:0001833,GO:0001834,GO:0002009,GO:0002181,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006401,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007424,GO:0007430,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009653,GO:0009719,GO:0009743,GO:0009746,GO:0009749,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0012501,GO:0015030,GO:0016043,GO:0016070,GO:0016604,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021510,GO:0022008,GO:0022402,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030575,GO:0030576,GO:0030971,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031641,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032880,GO:0032991,GO:0033120,GO:0033157,GO:0033267,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0034655,GO:0035148,GO:0035149,GO:0035152,GO:0035239,GO:0035295,GO:0036477,GO:0040007,GO:0040008,GO:0042023,GO:0042221,GO:0042306,GO:0042307,GO:0042594,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045893,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046872,GO:0046914,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051239,GO:0051252,GO:0051254,GO:0051716,GO:0051960,GO:0060255,GO:0060341,GO:0060429,GO:0060446,GO:0060541,GO:0060548,GO:0060562,GO:0061138,GO:0061564,GO:0061770,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070848,GO:0070849,GO:0070887,GO:0071310,GO:0071363,GO:0071364,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071931,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097458,GO:0097504,GO:0120025,GO:0120036,GO:0120038,GO:0150034,GO:1900180,GO:1900182,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1902680,GO:1902742,GO:1903047,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904951,GO:1990261,GO:1990782,GO:2000026,GO:2000112,GO:2000671,GO:2000672,GO:2001141
Exons4
Evalue7.48e-61
EggNOG OGsCOG1779@1|root,KOG2703@2759|Eukaryota
Descriptionpre-mRNA catabolic process
Cds size528
COG categoryZ
BRITEko00000,ko00001,ko00536
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8221.1.1prot_C-tenellus_contig8221.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8221 1489..4643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790088.2324524-UTR-C-tenellus_contig8221:794..14881680790088.2324524-UTR-C-tenellus_contig8221:794..1488Choristocarpus tenellus KU2346UTRC-tenellus_contig8221 795..1488 -
1680790088.3502636-UTR-C-tenellus_contig8221:4643..47771680790088.3502636-UTR-C-tenellus_contig8221:4643..4777Choristocarpus tenellus KU2346UTRC-tenellus_contig8221 4644..4777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790088.2458022-CDS-C-tenellus_contig8221:1488..17281680790088.2458022-CDS-C-tenellus_contig8221:1488..1728Choristocarpus tenellus KU2346CDSC-tenellus_contig8221 1489..1728 -
1680790088.3150563-CDS-C-tenellus_contig8221:2836..29571680790088.3150563-CDS-C-tenellus_contig8221:2836..2957Choristocarpus tenellus KU2346CDSC-tenellus_contig8221 2837..2957 -
1680790088.3287306-CDS-C-tenellus_contig8221:3969..40791680790088.3287306-CDS-C-tenellus_contig8221:3969..4079Choristocarpus tenellus KU2346CDSC-tenellus_contig8221 3970..4079 -
1680790088.338456-CDS-C-tenellus_contig8221:4586..46431680790088.338456-CDS-C-tenellus_contig8221:4586..4643Choristocarpus tenellus KU2346CDSC-tenellus_contig8221 4587..4643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8221.1.1

>prot_C-tenellus_contig8221.1.1 ID=prot_C-tenellus_contig8221.1.1|Name=mRNA_C-tenellus_contig8221.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=176bp
MEMGTLGSMYTSLEGLLTKARGNLVEGNPFYLGDSSTVHHGKESENQRKF
REFLERFQRLIVGKAFPFTLVLRDPLGNSFIGSLEHEDPADDPNIEVCSF
WRSFEENDDLGLNDINTDNYERCEGGRELAKVMEEEDEEEDAPRRLPHRV
ENDHPAPFTKGQEEQDDTKPSPILA*
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mRNA from alignment at C-tenellus_contig8221:795..4777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8221.1.1 ID=mRNA_C-tenellus_contig8221.1.1|Name=mRNA_C-tenellus_contig8221.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3983bp|location=Sequence derived from alignment at C-tenellus_contig8221:795..4777- (Choristocarpus tenellus KU2346)
AGGTCAAAGGCGGAGGGGCCATTCCGAAAAAGGGGACCTCCTACACACTT
ACCGCTACCTCTTCAAAAGACTTTCATCGAGACGTTTTGAAGTCAGACAC
TGCTATTCTCAATATACCTGAACTGGACTTGGTCATGGAGATGGGGACGC
TCGGAAGCATGTACACCTCTCTTGAGGGTCTGCTCACCAAGGTGTGTGTA
TGTTTTGGTATGGTGTGTTGTATGTTAAGAGGGTGATGCCTGCTGCTGCT
GCTGCTGCTGCAGCCTCTGTGGTAGAGGTTGATGAGACTGAAAAAGAATC
TTTGATTCTATGGGGGGGTTGTTTGTTTCAACTCTTTTAACGATTCGTTT
TTTTTATGTTTGTGTTGTATGTGTATGAATTGGTAAGTGTACTATTGTGC
CACTGGAATGTTCATGCTTGCTTTTGTGACAGTTTTGGACTCCCTTCTGC
TTGTGTATGGTTTGCTTTTTATTTGCTTTGAATGTGAATGGATTTCAGAA
GGGAGTGTAAAAATATTATGTGTATATATATTATTTTTTACTAGTAGAGG
AGAATTTCAGTTCCACGTCTCAGGCTTGTTTTGTGCTATTGAAGGTGATT
TTGACTCTTGTGAATGCTGTTGTTAAATATTTATTTTGCTGCGGACGTTT
CTCAAAAAAAATATTTTCCCTATATTATTCTTTAAAATTGTTCTCAAGGC
ACGAGGCAACTTGGTGGAAGGCAATCCATTCTACCTTGGGGATTCAAGCA
CCGTCCACCATGGGAAGGAGAGTGAAAATCAAAGAAAGTTCCGAGAATTT
TTGGAAAGGTAATTATTAACTGATGCCACAGATCCTGTTTTCATTTTTTT
TTTTTTTTCCCCTCTTGCAGGACACCCCAAGACCTCCATTTCCACCAGCA
TTTCAAATGGGGATTCTGTTTAGTTGGTGTTATTTGTGGGATTGCTTATA
CCGTTCACGGTATAATGCATAGATAGCATCATATCACTCTGTTGGCCGCT
GATTTCCAAGGTGGTGGAAAGAAGTGGAAATCCCTTCAGTGGTCGGTTGC
CTGCCTCCCCAGAAGGCCCCTGTTTTTCAAAGCTGGCTCTTTCCCACACT
CCTCCTTGCTATTCACTGTAAGTTGTAGTTAGTGATAGTTAAAGTTCATC
AGGGTTAGGGTTTTAGGGTCAGTAATTGTGAAAAGAGGAGCTGTTTTTTG
AGCGTGCAATGGACTGCCATGATGAAACAAGAGTCAAGAGGAAGTGGTGC
TATTATGTAGTATCATTAGAATCGATTTAGGAGTTCATGCCTTATGTCAT
TATTGTTACTTTATCAGTAGACCACTATTCACCGAGGGGAATGTTAGGGT
TAGGGTTAGGTGGCGGAAGACTGTGCTTACTGATGTTTACTTTGCTCCCA
AAGACTAATATTTTCTGACTATTGTCCAAGGTCTTGTTCCTGCATGCATA
TGGAATTAATTCCCCATCCCCCTCCTTGATGTTGTTCTTTGTTTTTTTGA
GCTTGGGGATAGTCACAATGATTTTGAAACTAAACTCACAATGGTGTTTT
GGGCTTTTATCTGTTGTGCTGGTACTAGTTGACCCTTTGCAAGTGTTTCT
AGACACTGCTGCTGTGTCAATGTTGTCCTAGATTATGTGAGCTCTGCAAT
TCCACTATTCTAGGGTGGCTGTACATATGGTACTGTTGATGCTGGGGGTT
TTTCTTCCTTCCTGGGATGAAACTGTGAGGCCATATAGAGTCAGTTAGAC
TAACATGTCGCACATCTTTTCCTGTTCATGCCCAATCCCTGGTTCTTTTT
TTTGCACTGTTGCTGAAAAGGTTTCAACGTTTGATTGTGGGGAAGGCGTT
TCCCTTCACTCTGGTGCTGAGAGACCCATTGGGGAACAGCTTCATTGGAT
CCCTAGAGCATGAGGACCCTGCCGATGACCCAAACATTGAGGTCAGCCTT
GTACTAGTGTCCCCACCTGTTGTTTTTCGATTTCAAAGGTGTATTGTTGG
TGCGTGTTGTCTTTTCGACTGTGCTGTCGCTACTGTGGTGCCTACATCGA
TGTCTCCTCAGAGAGCATAGCTCTAAGTGGGTGCCATTGCTCTACAATGC
TTGGTTCATGATGTCTGGTGTCCACAACATACAATGTACAATGCTTGGTT
CAATATATAGGACACTCTTTGATACCGCTTGGAGAATTTGTCTTGTCTGT
GTAACCTGTTTTGCACAGTGAAATGCCCGGAGCCCGCTCTATTTTAGCTT
CTGTAACAAATGTATCAAATGACAGGACAGCACGCTATCCTTCGTCGCTG
CCTTTTTGATGCAAATACGTTAAAGTTGTGTTGAGCAAGTGCCATGCACT
TGTTTTTCCCTAACCCTTGATTTAGTCCGAGAAGTGCACACACTTGACCC
TAACCCTAATCATTTTTTTCTTTTGTTCTTGTGTGCTGGCCGTTGGGGTT
GCCAGTCCTGCCCTGTCTCCTTTTTTTTTCTGCTCTGTTGGTGTACACAC
CATACTATCATGGAGGGTGGTGCCCCTTCTGATAGGGGACCTTCCTTTGT
GACTGCTTTGTGAATCTGATTTTTATGAGCAATTGTGGACTCAGAAAAGA
TATTCTGGAAACCTTCTGTATCCGCATACTCTTGATGGGGGTTGCCTGCC
TACATGTGCTCAAGAGAAATGGGATGTCAGGCACAACATTTTATTTAAGC
CTCCCTAAACAATAGAATGTCCGAAATTCACCCTTCTAGATACTTCGGTC
CTGTTCTGATTTGTACGAATTAGTGCAGTAGTCATTAACAGTACATGTTT
ATTGAAGCGCAACCCTCTTTTGATTGCCCTTTTCATATGCTGTGCTTGCT
ATCTGCTGATACTTTGTGGTCATGGTGTGCTTGTGGATGTTGCAATCAAC
ACTATCTACTCCCCCACACATCTTAATCCTGATTGAATGGCCTACCCATA
TGCGGTGCTCAGCATCTATCGATGCTTCTTATTCATAGTGTGCTTTTGTG
GGTGTTGCGATCAATACCACCTACTCCCCTACCCACCTTGATCACTCAGG
TGTGTTCATTTTGGCGATCCTTTGAAGAGAATGATGATCTCGGTCTCAAT
GATATTAATACAGACAACTACGAGAGATGTGAGGGGGGAAGAGAGTTGGC
CAAGGTGATGGAAGAAGAGGATGAGGAGGAGGATGCGCCTAGGCGTCTAC
CACATAGGGTAGAGAATGACCATCCTGCTCCCTTTACCAAGGGACAGGAG
GAGCAAGACGACACAAAGCCGTCACCGATACTAGCATAGCAGCAGTAGTT
GTTGTCGCAAATGTGTGAAATTGTTGTAACAACAGGATGAAGTTCATTTG
TGTGATGTTCCGTTTTAAAACACTATCTTAGCCTCGTACAAGGGTTGATT
TTCTCAGTGAAAAGACATTAGAAATGAGGTATTGTCCCCTTTTTCATGCT
TAGATGGTGGTTTGGACAGTATGTTGCCAGGTGGTGCTGAATAGAGGTGA
CCAAAAAAAAATTTGCTGATAATATTCTACGGCCTTGGAAGAAATCGTGG
AGTTGGTCTTTGAATGTGTGCACTACCAACCAGGTATCGTATTGTGTGAG
AATGTTCATGGTAAACGATTTATTTATTGCTTAGCTTATCAGTGCAGAAG
AGAGTGCAAGATAAGTTGATTGGCAACCTACTGAAGCCTGTTTCTGAATT
CAGACTCTGATACCCCTTCATCCCACGGATTCACTATTAATAACCTACTT
ACACCTCCAACCTGCTGCCTTTGTGCTAGTATTATGTTGGTCCTGGTTCA
TCATCAGTGGTGATTGTGGGGTGGAAGGCTCTATGTGCATTTGATATAGA
TTGTCAGGACCCCCAGTAAGCCACACTTAGCACAACACTATTACGCTCAT
ATAACACAACGCTTTATAGTGTTGTGATCAATGACACATCATGTTTTGCT
GGACAACAACTCAGCACATTTCAAGTGGGTAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig8221:795..4777-

>mRNA_C-tenellus_contig8221.1.1 ID=mRNA_C-tenellus_contig8221.1.1|Name=mRNA_C-tenellus_contig8221.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=528bp|location=Sequence derived from alignment at C-tenellus_contig8221:795..4777- (Choristocarpus tenellus KU2346)
ATGGAGATGGGGACGCTCGGAAGCATGTACACCTCTCTTGAGGGTCTGCT
CACCAAGGCACGAGGCAACTTGGTGGAAGGCAATCCATTCTACCTTGGGG
ATTCAAGCACCGTCCACCATGGGAAGGAGAGTGAAAATCAAAGAAAGTTC
CGAGAATTTTTGGAAAGGTTTCAACGTTTGATTGTGGGGAAGGCGTTTCC
CTTCACTCTGGTGCTGAGAGACCCATTGGGGAACAGCTTCATTGGATCCC
TAGAGCATGAGGACCCTGCCGATGACCCAAACATTGAGGTGTGTTCATTT
TGGCGATCCTTTGAAGAGAATGATGATCTCGGTCTCAATGATATTAATAC
AGACAACTACGAGAGATGTGAGGGGGGAAGAGAGTTGGCCAAGGTGATGG
AAGAAGAGGATGAGGAGGAGGATGCGCCTAGGCGTCTACCACATAGGGTA
GAGAATGACCATCCTGCTCCCTTTACCAAGGGACAGGAGGAGCAAGACGA
CACAAAGCCGTCACCGATACTAGCATAG
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