mRNA_C-tenellus_contig8213.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8213.2.2
Unique NamemRNA_C-tenellus_contig8213.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8213.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8213contigC-tenellus_contig8213:3530..6373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LUB5
PFAMsRibophorin_II
Model size2417
Max annot lvl2759|Eukaryota
KEGG koko:K12667
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019538,GO:0031224,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Exons3
Evalue1.73e-21
EggNOG OGsKOG2447@1|root,KOG2447@2759|Eukaryota
Descriptionprotein N-linked glycosylation
Cds size564
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790087.5357227-UTR-C-tenellus_contig8213:3529..36161680790087.5357227-UTR-C-tenellus_contig8213:3529..3616Choristocarpus tenellus KU2346UTRC-tenellus_contig8213 3530..3616 +
1680790087.5799685-UTR-C-tenellus_contig8213:4607..63731680790087.5799685-UTR-C-tenellus_contig8213:4607..6373Choristocarpus tenellus KU2346UTRC-tenellus_contig8213 4608..6373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790087.5490618-CDS-C-tenellus_contig8213:3616..37961680790087.5490618-CDS-C-tenellus_contig8213:3616..3796Choristocarpus tenellus KU2346CDSC-tenellus_contig8213 3617..3796 +
1680790087.5600255-CDS-C-tenellus_contig8213:3937..40591680790087.5600255-CDS-C-tenellus_contig8213:3937..4059Choristocarpus tenellus KU2346CDSC-tenellus_contig8213 3938..4059 +
1680790087.5705845-CDS-C-tenellus_contig8213:4345..46071680790087.5705845-CDS-C-tenellus_contig8213:4345..4607Choristocarpus tenellus KU2346CDSC-tenellus_contig8213 4346..4607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8213.2.2prot_C-tenellus_contig8213.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8213 3617..4607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8213.2.2

>prot_C-tenellus_contig8213.2.2 ID=prot_C-tenellus_contig8213.2.2|Name=mRNA_C-tenellus_contig8213.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=188bp
MMGKGVAALGFKSSGCASSKTGLSSGDLEQIHNGASLQASLGCNAEVPAD
AVELVQAALQRDDLWSIYLGTLSSKHLGLDLDGEGMLEKLMGLLLPDGSV
RSTPGTTRADRDVAMVAELLAELVPGSQSATALAMVNSFKEKHLDANPTL
VAPLNLARGDKISLKPTRVSDGFCYEAGTICTVGRRG*
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mRNA from alignment at C-tenellus_contig8213:3530..6373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8213.2.2 ID=mRNA_C-tenellus_contig8213.2.2|Name=mRNA_C-tenellus_contig8213.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2844bp|location=Sequence derived from alignment at C-tenellus_contig8213:3530..6373+ (Choristocarpus tenellus KU2346)
GCGGATGCCTACGCCGAAACCGCCTTGACAGCATTGGGAGGTTCTTCCAC
TCTTTCAGACAAGGATTATGCCACTCGACTCCTCACCATGATGGGCAAGG
GGGTAGCGGCCCTGGGGTTTAAGAGTTCAGGCTGTGCATCCTCTAAGACT
GGCTTGTCAAGCGGGGACTTGGAGCAGATCCACAATGGTGCTAGCCTCCA
GGCTAGTTTGGGATGCAACGCAGAGGTGCCTGCGGATGCTGTGGAGCTGG
TGCAGGCCGCTCTCCAGGTGCTTGTTTTTCGGAAAGGGGACAGAGTGTGC
TGCCTACATGTTTTCTTTTCTCTGCTCCCGGGGGTTGGCCCATCTTGCAC
AAAATCTCTACTCGTCTTTCGTATCCACTGACTTCGAAGAAATACTGGTT
GTGTGCAGAGAGATGATCTTTGGAGCATATATCTTGGAACCTTATCGAGT
AAGCACCTGGGGTTGGATTTGGATGGTGAAGGTATGCTGGAAAAGTTGAT
GGGGCTCCTGCTACCTGATGGATCCGTGAGGTGGGTAGTATCTACCATCT
CAGAGTTGGCCGTTTGGCAAACAAGCTGCGAGGTAATGTTTTCTAGACCC
GAGCGCCGCGAGTTCTCTGCGTAGAGCAGCTAAACATTGCACTGTACAGA
AATCTTCGCCCCAAGCTTAGCTTGTGGCGGGTACGTGATTTATTCTAGAT
TGTGTTTACTTGGGTCTTGCGTGTTTTGCGGGACTCTGTCCTGGCCCCCA
TTCGCTAATTCTGTTATTTGCTACACAACTCTGTCCCTTCTGAACACACC
TCTCCTCCTGGATAAGGTCTACTCCGGGGACGACCAGAGCCGACAGGGAC
GTGGCAATGGTGGCGGAGCTCCTGGCGGAGCTGGTGCCAGGCTCCCAGTC
TGCAACCGCTCTGGCAATGGTGAACTCTTTCAAAGAAAAGCACTTGGATG
CCAACCCCACCCTTGTTGCACCGCTAAATCTTGCCCGTGGCGATAAAATC
AGCCTCAAGCCAACAAGGGTGAGTGATGGATTCTGTTATGAGGCAGGTAC
AATATGCACTGTAGGCAGAAGGGGTTGACAACAAGGACAAGAGAATGCAA
GGACAGCTGGTGTGTTTCTTCTAAGAAGGCATGTGTTGATGGTGTACACG
CCACATACTAAGAGGGAAAAACCGAGCCCTATAGGTAGGTTACCTTTTTG
AAAATACAGTGGATTAGTCCCTGAAACACTACTTGCGAACTTCTAGGTTT
TGATCGACTCAATTCGTTTAATCAGCAAATGGTCGTAACTCTTATTAACC
CTTCTGTTTGTTCAGTTATTGGGTTAGTTTTTCATTTCATGTACTAAGGC
ACCGTGAAGAGCTCCCCATCCCCCATCACAAACATCCAAACCTATGAATC
TGCCTGATGCCTGTTGGAGGCGTCAGGTTTGTAGACCTTGGTGATCCCTC
TGCCTGGTTGTTGTCCTGCATGGTGATGGTGACGAGGAGCTAGGGTTACA
CTAGATGCAACTCGCAGGGTATGGTATAGTGCACGCCCTACTTGTGCTGA
TAGGTTGCAGCCACGTCCAACAGAGAGGCGAGAGGGTTTCACTAGAGCCT
CATTTGAACACTGTGGCGGAAGTTCAGTTGCTGCGGGGGGAGGGGGAGGG
GGAGGTGCAAGTCACGAGGAGAGAGGGCATAAAGCAGTACGCGTGAGTGA
AAATCTACTCTTTTGAGGCAGCACTGTGCCTTCCAGTGGGCAATGAGAGA
GGTGGCTTCAATGACCCGCTTAAGTGGTGGCAAGAGAGGGATTCATCGTT
CCCATGCTTAACCAACATTGCCTGAGGTGCTCTTTCGGTTCCTGCTTCGG
AGGCAGATTCGGAGGGTGTGTTCTTACCGTGTGGGAATGTTGGTGCAGCA
AAGAGAATTAGACCGGGGTTTGGACAACGTTCAACTTCTCATCTTACTGT
GTAGCATCTGACTGACTCGCATTGGATGCATGCAAAGAGTGCCAGGGAGT
TGACTGATACCTGAAGACTGGGGGAATCGATCCAGTGACAGCGGCGTGGA
ATAGCCGCAATGTTTTTCTGGAGTTGGAGCTCATCGTACTGGTAGTGCTT
GTGGTTCATGGGTACGGCTACCTGTTCCATTTCGATGTGACCATAACTGG
CTCTATCAAGTGCGATGTGTAGAACGGTCTTACGACTTCATTACTGCACT
CTCTCTCTATATATATATATATACATGCGTAGTTGTTTTTGTTGATCATA
CCTGTTTTGAGAATCATGAAAAATCCCTCCCTGCAACCCCTGAACCATTT
ACCCTTCAGCCCTCCGGGAAGGACATAGCAAGGGGGCAATATCCCGCCTC
AGATATCACAGGAGATTGCGTTTCTGGCAGCGGTACGAAGTCAAATGTTA
AAATACTTTCGTGGCACTGGCAGGGCCTCTCACCGGTCAGGGTGCCTTTT
GCCCCTCTAAATAGCGCACCCCTTGGTTAGCAGCGTGTGTCACGTGCCCC
TGCCCTGTTCGCCAACACAATTGGGTCGAATGATGAGTAAAGAAATATGT
TCTTTCGGACTGATTTCACCTTTTTTGTTTTGATAACAGCAATTTCTATT
TTTTTTTTAATTGCAGCACGTGCGTTCGTTCATTTGTTCGTGCGTTTGTG
CGTGCGAGTGAGCTCACAGTTTCTTCAAGTGCATAAAGCGCAGGTTCAGA
CGGAAGCAAAGGGCTGTCTGTCTCGCCGGGAAGCTAATAGTTGTTTTATT
ACTCAGACCATCGGCAACGAGAATGTTCGATCCAACTTTTTTTTATTCTT
ACATTGTTCCTAGTCTCCCTGAGACTCCCCCTGCCCCCCCCCCC
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Coding sequence (CDS) from alignment at C-tenellus_contig8213:3530..6373+

>mRNA_C-tenellus_contig8213.2.2 ID=mRNA_C-tenellus_contig8213.2.2|Name=mRNA_C-tenellus_contig8213.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=564bp|location=Sequence derived from alignment at C-tenellus_contig8213:3530..6373+ (Choristocarpus tenellus KU2346)
ATGATGGGCAAGGGGGTAGCGGCCCTGGGGTTTAAGAGTTCAGGCTGTGC
ATCCTCTAAGACTGGCTTGTCAAGCGGGGACTTGGAGCAGATCCACAATG
GTGCTAGCCTCCAGGCTAGTTTGGGATGCAACGCAGAGGTGCCTGCGGAT
GCTGTGGAGCTGGTGCAGGCCGCTCTCCAGAGAGATGATCTTTGGAGCAT
ATATCTTGGAACCTTATCGAGTAAGCACCTGGGGTTGGATTTGGATGGTG
AAGGTATGCTGGAAAAGTTGATGGGGCTCCTGCTACCTGATGGATCCGTG
AGGTCTACTCCGGGGACGACCAGAGCCGACAGGGACGTGGCAATGGTGGC
GGAGCTCCTGGCGGAGCTGGTGCCAGGCTCCCAGTCTGCAACCGCTCTGG
CAATGGTGAACTCTTTCAAAGAAAAGCACTTGGATGCCAACCCCACCCTT
GTTGCACCGCTAAATCTTGCCCGTGGCGATAAAATCAGCCTCAAGCCAAC
AAGGGTGAGTGATGGATTCTGTTATGAGGCAGGTACAATATGCACTGTAG
GCAGAAGGGGTTGA
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