mRNA_C-tenellus_contig8207.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8207.1.1
Unique NamemRNA_C-tenellus_contig8207.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A4Q9LQK2_9MICR (Uncharacterized protein (Fragment) n=3 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LQK2_9MICR)

HSP 1 Score: 84.0 bits (206), Expect = 1.030e-17
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 KKVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR-KLSNGTWLDEKIGI 321
            K++   +KP L+D+ K++R  F +S +       +L DDLYD+VH+DEKWF++ +  +  YL   E+ P+     +KR+I K+MF+ AVA PR       + D KIGI
Sbjct:  103 KRISSTVKPTLTDKNKMDRLKFCLSKVNLANNGDLLFDDLYDYVHIDEKWFYLTKVKRSYYLMLNEENPER-NCKSKRFITKIMFMAAVARPRYDAHRKLYFDGKIGI 209          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: W2R9B9_PHYPN (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2R9B9_PHYPN)

HSP 1 Score: 85.9 bits (211), Expect = 2.600e-17
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   16 RIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPRKLS--NGTWLDEKIGI 321
            R+KP+LSDQ + +R  F    + R  RN  + D   ++VH+DEKWF++ ++ QG YL   E+PP      NK YIVKVMFL AVA PR  S  +  W D KIG+
Sbjct:  120 RLKPLLSDQHRADRLKFAYGFVHRGPRNTRVFDSFMNYVHLDEKWFYLKKENQGFYLGTHEEPPHL-TVKNKNYIVKVMFLVAVARPRWDSKRHRIW-DGKIGL 221          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A4Q9LSA0_9MICR (Uncharacterized protein n=2 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LSA0_9MICR)

HSP 1 Score: 80.5 bits (197), Expect = 3.090e-17
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 KKVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR-KLSNGTWLDEKIGI 321
            KK+   +KP L+D+ K++R  F +  +       +L DDLYD+VH+DEKWF++ +  +  YL   E+ P+     +K +I K+MF+ AVA PR       + D KIGI
Sbjct:    2 KKISSTVKPTLTDKNKMDRLKFCLYKVNLANNGDLLFDDLYDYVHIDEKWFYLTKVKRSYYLMLNEEKPER-NCKSKPFITKIMFMAAVARPRYDAHRKLYFDGKIGI 108          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A4Q9LWQ4_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LWQ4_9MICR)

HSP 1 Score: 83.6 bits (205), Expect = 3.240e-17
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    4 KVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR-KLSNGTWLDEKIGI 321
            K+   +KP L+D+ K++R  F +S +       +L DDLYD+VH+DEKWF++ +  +  YL   E+ P+     +KR+I K+MF+ AVA PR       + D KIGI
Sbjct:   88 KISSTVKPTLTDKNKMDRLKFCLSKVNLANNGDLLFDDLYDYVHIDEKWFYLTKVKRSYYLMLNEENPER-NCKSKRFITKIMFMAAVARPRYDAHRKLYFDGKIGI 193          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A4V2JXP6_9MICR (Uncharacterized protein n=2 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4V2JXP6_9MICR)

HSP 1 Score: 83.6 bits (205), Expect = 8.970e-17
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 KKVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPRKLSNGT-WLDEKIGI 321
            KK+   +KP L+D+ K++R  F +S +       +L DDLYD+VH+DEKWF++ +  +  YL   E+ P+     +KR+I K+MF+ AVA PR  ++   + D KIGI
Sbjct:   78 KKISSTVKPTLTDKNKMDRLLFCLSKVNLTKNGDLLFDDLYDYVHIDEKWFYLTKVKRSYYLMLNEENPEK-NCKSKRFITKIMFMAAVARPRHDAHRKLYFDWKIGI 184          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A4Q9LXX8_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LXX8_9MICR)

HSP 1 Score: 82.0 bits (201), Expect = 9.100e-17
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    4 KVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR-KLSNGTWLDEKIGI 321
            K+   +KP L+D+ K++R  F +S +       +L DDLYD+VH+D+KWF++ +  +  YL   E+ P+     +KR+I K+MF+ AVA PR       + D KIGI
Sbjct:  103 KISSTVKPTLTDKNKMDRLKFCLSKVNLANNGDLLFDDLYDYVHIDKKWFYLTKVKRSYYLMLNEENPER-NCKSKRFITKIMFMAAVARPRYDAHRKLYFDGKIGI 208          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A4Q9LLI7_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Hamiltosporidium tvaerminnensis TaxID=1176355 RepID=A0A4Q9LLI7_9MICR)

HSP 1 Score: 83.6 bits (205), Expect = 1.130e-16
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 KKVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR-KLSNGTWLDEKIGI 321
            K++   +KP L+D+ K++R  F +S +        L DDLYD+VH+DEKWF++ +  +  YL   E+ P+     +KR+I+K+MF+ AVA PR       + D KIGI
Sbjct:  120 KRISSTVKPTLTDKNKMDRLKFCLSKVNLANNGDFLFDDLYDYVHIDEKWFYLTKVKRSYYLMLNEEEPER-NYKSKRFIMKIMFMAAVARPRYDAHRKNYFDGKIGI 226          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: W2WVS4_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WVS4_PHYPR)

HSP 1 Score: 80.5 bits (197), Expect = 3.400e-16
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   16 RIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR 279
            R+KP+LSDQ + +R  F    + R  RN  + D   ++VH+DEKWF++ ++ Q  YL   E+PP      NK YIVKVMFL AVA PR
Sbjct:  154 RLKPLLSDQHRADRLKFAYGFVHRGPRNTRVFDSFMNYVHLDEKWFYLKKENQRFYLGTHEEPPHL-TVKNKNYIVKVMFLVAVARPR 240          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A024U573_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U573_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.940e-16
Identity = 47/101 (46.53%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   19 IKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR-KLSNGTWLDEKIG 318
            +KP L+D  K  R  + I H++         D LYD VHVDEKWFF     Q  YL P E PP      +KR+I KVMFL+AVA PR    +G W D KIG
Sbjct:   24 VKPQLTDANKAVRLQWAIEHVRSAAPGTYTFDPLYDSVHVDEKWFFATRVKQTYYLAPGEKPPHR-TCKSKRFIKKVMFLSAVARPRWNDESGEWFDGKIG 123          
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Match: A0A4Q9LHQ0_9MICR (Uncharacterized protein n=4 Tax=Hamiltosporidium TaxID=1176354 RepID=A0A4Q9LHQ0_9MICR)

HSP 1 Score: 82.4 bits (202), Expect = 4.170e-16
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 1
Query:    1 KKVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKWFFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPR-KLSNGTWLDEKIGI 321
            K++   +KP L+D+ K+NR  F +S +       +L DDLYD+VH+ EKWF++ +  +  YL   ++ PK     +KR+I K+MF+ A+A PR       + D KIGI
Sbjct:   31 KRISSTVKPTLTDKNKMNRLKFCLSKVNLANNRDLLFDDLYDYVHIYEKWFYLTKVKRSYYLMLNDEKPKR-NCKSKRFITKIMFMAALALPRYDAHRKLYFDRKIGI 137          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8207.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Q9LQK2_9MICR1.030e-1738.89Uncharacterized protein (Fragment) n=3 Tax=Hamilto... [more]
W2R9B9_PHYPN2.600e-1746.15DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A4Q9LSA0_9MICR3.090e-1737.96Uncharacterized protein n=2 Tax=Hamiltosporidium t... [more]
A0A4Q9LWQ4_9MICR3.240e-1739.25Uncharacterized protein (Fragment) n=1 Tax=Hamilto... [more]
A0A4V2JXP6_9MICR8.970e-1739.81Uncharacterized protein n=2 Tax=Hamiltosporidium t... [more]
A0A4Q9LXX8_9MICR9.100e-1738.32Uncharacterized protein (Fragment) n=1 Tax=Hamilto... [more]
A0A4Q9LLI7_9MICR1.130e-1638.89Uncharacterized protein (Fragment) n=1 Tax=Hamilto... [more]
W2WVS4_PHYPR3.400e-1646.59Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A024U573_9STRA3.940e-1646.53Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A4Q9LHQ0_9MICR4.170e-1637.96Uncharacterized protein n=4 Tax=Hamiltosporidium T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8207contigC-tenellus_contig8207:4963..5286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog157072.XP_008870373.1
Model size324
Max annot lvl157072.XP_008870373.1|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.46e-17
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790086.6482859-CDS-C-tenellus_contig8207:4962..52861680790086.6482859-CDS-C-tenellus_contig8207:4962..5286Choristocarpus tenellus KU2346CDSC-tenellus_contig8207 4963..5286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8207.1.1prot_C-tenellus_contig8207.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8207 4963..5286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8207.1.1

>prot_C-tenellus_contig8207.1.1 ID=prot_C-tenellus_contig8207.1.1|Name=mRNA_C-tenellus_contig8207.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=108bp
KKVEQRIKPVLSDQQKVNRSGFVISHLQRRGRNGVLVDDLYDWVHVDEKW
FFILEDGQGVYLHPTEDPPKPPQALNKRYIVKVMFLTAVASPRKLSNGTW
LDEKIGI*
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mRNA from alignment at C-tenellus_contig8207:4963..5286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8207.1.1 ID=mRNA_C-tenellus_contig8207.1.1|Name=mRNA_C-tenellus_contig8207.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=324bp|location=Sequence derived from alignment at C-tenellus_contig8207:4963..5286+ (Choristocarpus tenellus KU2346)
AAGAAGGTCGAGCAGAGGATTAAGCCAGTCCTCTCAGACCAGCAGAAAGT CAACAGGTCAGGTTTTGTCATCAGTCACTTGCAAAGGAGAGGGAGAAATG GGGTATTAGTGGATGATCTATATGACTGGGTGCATGTGGACGAGAAGTGG TTTTTCATCCTCGAAGATGGGCAAGGTGTGTACCTGCACCCCACTGAGGA CCCCCCCAAACCCCCACAGGCACTGAATAAGCGTTACATTGTGAAGGTGA TGTTCCTTACAGCTGTGGCCAGCCCTAGGAAGCTATCCAACGGGACGTGG TTGGATGAGAAAATCGGAATCTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig8207:4963..5286+

>mRNA_C-tenellus_contig8207.1.1 ID=mRNA_C-tenellus_contig8207.1.1|Name=mRNA_C-tenellus_contig8207.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=324bp|location=Sequence derived from alignment at C-tenellus_contig8207:4963..5286+ (Choristocarpus tenellus KU2346)
AAGAAGGTCGAGCAGAGGATTAAGCCAGTCCTCTCAGACCAGCAGAAAGT
CAACAGGTCAGGTTTTGTCATCAGTCACTTGCAAAGGAGAGGGAGAAATG
GGGTATTAGTGGATGATCTATATGACTGGGTGCATGTGGACGAGAAGTGG
TTTTTCATCCTCGAAGATGGGCAAGGTGTGTACCTGCACCCCACTGAGGA
CCCCCCCAAACCCCCACAGGCACTGAATAAGCGTTACATTGTGAAGGTGA
TGTTCCTTACAGCTGTGGCCAGCCCTAGGAAGCTATCCAACGGGACGTGG
TTGGATGAGAAAATCGGAATCTAG
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