mRNA_C-tenellus_contig8174.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8174.1.3
Unique NamemRNA_C-tenellus_contig8174.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: D7FSM0_ECTSI (Divalent cation transporter, carboxyterminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSM0_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 8.470e-107
Identity = 188/244 (77.05%), Postives = 212/244 (86.89%), Query Frame = 1
Query:    1 LLVQGDSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSGSGGGESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLG 732
            +L +GDSW +AAHRLR ANV  APVVD  G L+AVL+P+DLL+EMEIEATDD+MR SGSGGGESYFGTPL  LVASRVGWLVSLLCLQS SS+ILQ +Q VIEK+IVIALFLTMLTGTAGNAGNQ+S  A+VIRGLAT EI+  N  +V+ REA+A + +A VLS ASF+RVLLTPGA+ +ATLAVSVAMG TVVGAVMFGT+API+L   GVDPVNFASPALATLTDVSGVFILCSVA LMLG
Sbjct:  169 MLHEGDSWEDAAHRLRQANVLAAPVVDSDGVLVAVLNPSDLLQEMEIEATDDIMRQSGSGGGESYFGTPLPSLVASRVGWLVSLLCLQSFSSLILQSFQNVIEKNIVIALFLTMLTGTAGNAGNQSS--AIVIRGLATEEIHQGNRWRVIWREARAGVASACVLSVASFVRVLLTPGATTVATLAVSVAMGTTVVGAVMFGTIAPIVLHGMGVDPVNFASPALATLTDVSGVFILCSVAKLMLG 410          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A835YYN6_9STRA (CBS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYN6_9STRA)

HSP 1 Score: 329 bits (844), Expect = 1.230e-106
Identity = 179/245 (73.06%), Postives = 212/245 (86.53%), Query Frame = 1
Query:    1 LLVQGDSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSGSGGGESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLGG 735
            +L +GD+W EAA RLR A ++ APVVD+ G L+A+L+P DLL EMEIEATDD+ R+SGSGGGE+YFGTPLM+LV  R GWLVSLL LQSLSSVIL  +Q VIE+HIVIALFLTMLTGTAGNAGNQ+S  AMVIRGLATGEIN++N  + + REAKAA+ AA++LS ASF RV +TPG++ LA++AVSVAMGATVVGAV+FGT  P+LLDRFGVDPVNFASPALATLTDVSGV ILC+VAS++L G
Sbjct:   23 VLKEGDAWEEAAQRLRKAGISSAPVVDEDGFLVAILNPTDLLMEMEIEATDDISRFSGSGGGETYFGTPLMKLVLRRCGWLVSLLMLQSLSSVILTHFQSVIERHIVIALFLTMLTGTAGNAGNQSS--AMVIRGLATGEINSANKMRCLWREAKAALIAAVILSAASFARVWMTPGSTWLASVAVSVAMGATVVGAVLFGTATPLLLDRFGVDPVNFASPALATLTDVSGVLILCTVASMLLSG 265          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A6H5JKL2_9PHAE (CBS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL2_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 1.710e-105
Identity = 188/244 (77.05%), Postives = 212/244 (86.89%), Query Frame = 1
Query:    1 LLVQGDSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSGSGGGESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLG 732
            +L +GDSW + AHRLR ANV  APVVD  G L+AVL+P+DLL+EMEIEATDD+MR SGSGGGESYFGTPL  LVASRVGWLVSLLCLQS SSVILQ +Q VIEK+IVIALFLTMLTGTAGNAGNQ+S  A+VIRGLAT EI+  N  +V+ REA+A + +A VLS ASF+RVLLTPGA+ +ATLAVS+AMGATVVGAVMFGT+API+L   GVDPVNFASPALATLTDVSGVFILCSVA LMLG
Sbjct:  302 MLHEGDSWEDTAHRLRQANVLAAPVVDSDGVLVAVLNPSDLLQEMEIEATDDIMRQSGSGGGESYFGTPLPSLVASRVGWLVSLLCLQSFSSVILQSFQNVIEKNIVIALFLTMLTGTAGNAGNQSS--AIVIRGLATEEIHQGNRWRVIWREARAGVASACVLSVASFIRVLLTPGATTVATLAVSIAMGATVVGAVMFGTIAPIVLHGMGVDPVNFASPALATLTDVSGVFILCSVAKLMLG 543          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A4D9CYH9_9STRA (CBS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYH9_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.150e-78
Identity = 141/239 (59.00%), Postives = 192/239 (80.33%), Query Frame = 1
Query:   16 DSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSGSGGGESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLG 732
            D + +A   +RA  +T+APVV +   ++ +++P+D+LKEME+EATDDV RYSGSG  ES+FGTP+++LV +R  WLVSLL LQSLSS+IL  +  +IE+H+VIALFLTMLTGTAGNAGNQ+S  AMVIRG+ATGEIN  N  + V+RE KAA+  + +L+ A+FLRV +TPG+++++T+AV++A+  TVVGA  FGTVAP+++DR GVDP N ASPAL+TL DV GV +LC+++S MLG
Sbjct:  366 DEYDDAIGAMRAKRLTYAPVVTEDEVVVGIITPSDMLKEMEMEATDDVSRYSGSGSTESFFGTPVLQLVTARASWLVSLLMLQSLSSIILTHFSALIERHLVIALFLTMLTGTAGNAGNQSS--AMVIRGIATGEINRKNGWKAVVREVKAALLMSALLAVAAFLRVYITPGSTVMSTVAVTLALSVTVVGACAFGTVAPLVMDRLGVDPANCASPALSTLVDVGGVLVLCALSSAMLG 602          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A0G4EE00_VITBC (CBS domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EE00_VITBC)

HSP 1 Score: 251 bits (642), Expect = 4.650e-74
Identity = 139/248 (56.05%), Postives = 191/248 (77.02%), Query Frame = 1
Query:   16 DSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSG-------SGGGESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLGGG 738
            ++  EA+ RLR   VT AP+VD++G L+ +LSP DLL EME E T+D++R+ G          G+SYF TP++  + SR GW+VSLL LQSLSS++L ++Q VIE+++VIALFLTMLTGTAGNAGNQ+S  A VIRGLATGEI  +NA +VVLRE + A   A++L+GA+F+RV LTPG+++ + + V +AMGAT + A++ GT++PI+L+  G+DP N ASPALAT TDV+GV ILC++AS++LGGG
Sbjct:  198 ENLEEASKRLRQRFVTMAPLVDEKGQLVGILSPNDLLNEMEAELTEDLLRFEGIFPSETMEKVGDSYFATPVIEHIKSRAGWVVSLLFLQSLSSIVLTKFQGVIERNLVIALFLTMLTGTAGNAGNQSS--ATVIRGLATGEITHANAWKVVLRELRIASVMAVLLAGAAFMRVALTPGSTVASAVVVGLAMGATCLVAIILGTLSPIILEWIGLDPCNCASPALATATDVAGVLILCTIASVLLGGG 443          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A6T6NC75_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6NC75_9RHOD)

HSP 1 Score: 227 bits (579), Expect = 9.270e-65
Identity = 130/242 (53.72%), Postives = 172/242 (71.07%), Query Frame = 1
Query:   16 DSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSGSGG----GESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLML 729
            D       +LR  NV  APVVD    L+ VL+  D+++E+E EATDD++RY G GG     ESYFGT + +L   R+ WLV LL LQSLSS++L RYQ +IE ++V+ALFLTMLTGT GNAGNQ+S  A++IRGLATGEI   N  +VV++E    +  + VL+  SF RV  T G+++L++  VS+A+  T V A++ GT+AP+LL+R GVDP N ASPALATLTDV GV ILCS+AS++L
Sbjct:  212 DDLDNVLRKLRRDNVLIAPVVDVEEKLVGVLTATDMIRELEFEATDDLLRYGGVGGDEETAESYFGTSIRKLFFGRITWLVGLLMLQSLSSIVLGRYQSLIEANVVLALFLTMLTGTGGNAGNQSS--ALIIRGLATGEIRRENYSRVVMKEIAVGISLSFVLAIVSFGRVYFTTGSNVLSSFTVSIAVLLTTVFAILGGTIAPMLLERVGVDPCNCASPALATLTDVGGVLILCSLASILL 451          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A0G4HK72_9ALVE (MgtE domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HK72_9ALVE)

HSP 1 Score: 209 bits (531), Expect = 6.420e-57
Identity = 138/303 (45.54%), Postives = 176/303 (58.09%), Query Frame = 1
Query:   16 DSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSG-------------------------------------------------------------SGGG--ESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLGG 735
            ++   A  RL   N  FAP++D RG L+ VLSP D+L+E E E TDD++RY G                                                              GGG   +Y+ TP+   V SR  WLV+LL LQSLSS+IL  +Q V+++HIVIALFLTMLTGTAGNAGNQ+S  A VIRGLATGE+   NA +VV RE + A    L+LS ASF+RV ++ G S+ A+  V+ AMG T VGAV+ GTV PI+L RFG+DP   ASPALAT+TDV GV++LCS+A+ +L G
Sbjct:  242 ENLERACLRLTRKNAAFAPLLDSRGSLMGVLSPLDVLRERETEFTDDMLRYEGIFFDPPRIQEMKERERXXXXXXXXXXXXXXXXXXXGSGKDVSALSPTADALGEWGEMGESAEGGGMLSTYWKTPITYHVKSRASWLVALLGLQSLSSIILAHFQDVVQRHIVIALFLTMLTGTAGNAGNQSS--ATVIRGLATGEVTDQNAMEVVGREVRIAAIVGLMLSAASFVRVFVS-GGSLGASAVVASAMGLTTVGAVLLGTVVPIVLARFGLDPCTCASPALATITDVLGVYVLCSLANSVLTG 541          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A7J7ILB5_9RHOD (CBS domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILB5_9RHOD)

HSP 1 Score: 207 bits (527), Expect = 9.570e-56
Identity = 123/251 (49.00%), Postives = 169/251 (67.33%), Query Frame = 1
Query:    1 LLVQGDSWVEAAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSG------SGGGESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLGG 735
            +L   + +  A  RLR A    APVVD    L+ +++ AD+++EME+EATDD++R+ G      +   ESYF T     V  R  WLV+LL LQS+SS++L  Y  +IE+H+V+ALFLTM+ G  GNAGNQ+S  A+VIRGLATGEINASNA +V+ RE       A VL+   F+RV ++ G  ILA++ VS ++  TV  AV+ GT+AP++L R G+DP + ASP L+TLTD+ GV  LC VAS++LGG
Sbjct:  366 VLTVDEEFEAAVRRLRNAGALTAPVVDSELRLVGLITAADIIREMELEATDDILRFGGVESPLQTNDIESYFKTSTRSFVIGRSAWLVALLLLQSVSSIVLGHYSSLIERHVVLALFLTMMVGAGGNAGNQSS--ALVIRGLATGEINASNAGRVLWRELVVGCTIATVLAAVGFVRVSMS-GGDILASVTVSASLWITVFMAVLTGTIAPLVLARLGLDPCHCASPLLSTLTDIGGVLALCLVASIILGG 613          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: M2WSY5_GALSU (Magnesium transporter, MgtE family n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WSY5_GALSU)

HSP 1 Score: 197 bits (500), Expect = 9.370e-55
Identity = 120/248 (48.39%), Postives = 169/248 (68.15%), Query Frame = 1
Query:    1 LLVQGDSWVE-AAHRLRAANVTFAPVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSGSGGGE---SYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLG 732
            ++ + D+ +E AA ++R+  V  APVVD  G+ L +++  D+++E+E EA +D MR SG    +   SYF T    L+  R+ WLV+LL  QS+SS+IL  +Q +IE+H+VIALFLTML GT GNAGNQ+S  A+VIRGLATGEI+  NA  VV RE + A+  A +LS   F+RVL T   +I A L VS+A+   V+ +++ G V P+LL++ G DP   ASPALAT TDV GV ++C+VA ++LG
Sbjct:   73 VVFRDDTSLEIAARKVRSFGVFCAPVVDSEGNFLGIVNALDIIREVEFEAAEDFMRVSGLNSVDVFQSYFETSSFSLIRERLSWLVALLLFQSISSIILGFFQDLIERHVVIALFLTMLIGTGGNAGNQSS--AIVIRGLATGEIDRRNAYLVVSREFRIAVIMASILSIVGFVRVLFTVPNNIKAALTVSIALFLIVISSIVAGAVTPLLLEQCGADPAYCASPALATATDVVGVLLICAVAIVVLG 318          
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Match: A0A7S0XVN6_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XVN6_HEMAN)

HSP 1 Score: 191 bits (486), Expect = 5.940e-52
Identity = 114/234 (48.72%), Postives = 160/234 (68.38%), Query Frame = 1
Query:   67 APVVDDRGDLLAVLSPADLLKEMEIEATDDVMRYSGSGGG----------ESYFGTPLMRLVASRVGWLVSLLCLQSLSSVILQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINASNARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATVVGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLGGG 738
            AP++D    ++ V++P D+LK+  IE TDD++RYSG               SYFGTP+   +  R   L  LL LQSLSSV+L RYQ ++E+++ +ALFLTMLTGT GNAGNQ+S  A++IRGL+TGEI+ +N+ +VV+RE  A+   AL+L+ A+F RV+LT GA +   + ++VA  ATVV AV  GT+ P+ L R G+DP N +SP LATLTD+ GV +LC V++ +L  G
Sbjct:  153 APLLDRENRIVGVINPQDVLKQQMIEDTDDMLRYSGVINPMRDTEENLPYASYFGTPVWTHIRQRSTVLTVLLLLQSLSSVVLSRYQGLLERNVFLALFLTMLTGTGGNAGNQSS--ALIIRGLSTGEIDDNNSHKVVIREVVASSVIALMLAAAAFARVMLTKGAPLQMGITIAVATYATVVFAVAGGTIVPLALQRIGLDPCNLSSPMLATLTDIMGVLLLCVVSTAVLEPG 384          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8174.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSM0_ECTSI8.470e-10777.05Divalent cation transporter, carboxyterminus n=1 T... [more]
A0A835YYN6_9STRA1.230e-10673.06CBS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5JKL2_9PHAE1.710e-10577.05CBS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9CYH9_9STRA1.150e-7859.00CBS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A0G4EE00_VITBC4.650e-7456.05CBS domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A6T6NC75_9RHOD9.270e-6553.72Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A0G4HK72_9ALVE6.420e-5745.54MgtE domain-containing protein n=1 Tax=Chromera ve... [more]
A0A7J7ILB5_9RHOD9.570e-5649.00CBS domain-containing protein n=1 Tax=Cyanidiococc... [more]
M2WSY5_GALSU9.370e-5548.39Magnesium transporter, MgtE family n=1 Tax=Galdier... [more]
A0A7S0XVN6_HEMAN5.940e-5248.72Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8174contigC-tenellus_contig8174:358..3177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSM0
PFAMsCBS,MgtE,MgtE_N
Model size1666
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.46e-90
EggNOG OGsCOG2239@1|root,2S2TW@2759|Eukaryota
Ec32 ortholog descriptiondivalent cation transporter
Ec32 orthologEc-04_000520.1
DescriptionDivalent cation transporter
Cds size609
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790085.022476-UTR-C-tenellus_contig8174:357..4891680790085.022476-UTR-C-tenellus_contig8174:357..489Choristocarpus tenellus KU2346UTRC-tenellus_contig8174 358..489 +
1680790085.0682988-UTR-C-tenellus_contig8174:2252..31771680790085.0682988-UTR-C-tenellus_contig8174:2252..3177Choristocarpus tenellus KU2346UTRC-tenellus_contig8174 2253..3177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790085.0356596-CDS-C-tenellus_contig8174:489..7401680790085.0356596-CDS-C-tenellus_contig8174:489..740Choristocarpus tenellus KU2346CDSC-tenellus_contig8174 490..740 +
1680790085.0455356-CDS-C-tenellus_contig8174:1057..13101680790085.0455356-CDS-C-tenellus_contig8174:1057..1310Choristocarpus tenellus KU2346CDSC-tenellus_contig8174 1058..1310 +
1680790085.0551262-CDS-C-tenellus_contig8174:2147..22521680790085.0551262-CDS-C-tenellus_contig8174:2147..2252Choristocarpus tenellus KU2346CDSC-tenellus_contig8174 2148..2252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8174.1.3prot_C-tenellus_contig8174.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8174 490..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8174.1.3

>prot_C-tenellus_contig8174.1.3 ID=prot_C-tenellus_contig8174.1.3|Name=mRNA_C-tenellus_contig8174.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=203bp
MEIEATDDVMRYSGSGGGESYFGTPLMRLVASRVGWLVSLLCLQSLSSVI
LQRYQRVIEKHIVIALFLTMLTGTAGNAGNQASCSAMVIRGLATGEINAS
NARQVVLREAKAAMCAALVLSGASFLRVLLTPGASILATLAVSVAMGATV
VGAVMFGTVAPILLDRFGVDPVNFASPALATLTDVSGVFILCSVASLMLG
GG*
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mRNA from alignment at C-tenellus_contig8174:358..3177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8174.1.3 ID=mRNA_C-tenellus_contig8174.1.3|Name=mRNA_C-tenellus_contig8174.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2820bp|location=Sequence derived from alignment at C-tenellus_contig8174:358..3177+ (Choristocarpus tenellus KU2346)
TTGCTGGTTCAGGGGGACAGCTGGGTAGAGGCAGCGCACCGTCTTAGAGC TGCAAATGTCACATTTGCCCCAGTGGTGGATGATAGGGGTGATCTGCTAG CAGTCTTGAGCCCTGCTGATCTGTTGAAAGAAATGGAAATTGAGGCCACA GATGATGTGATGCGCTACTCTGGTTCTGGTGGAGGGGAGAGTTACTTTGG AACACCTTTGATGCGACTGGTAGCCAGCAGGGTGGGATGGCTGGTTTCGT TGCTGTGTCTGCAATCCCTCTCATCAGTCATTCTTCAGCGATATCAGAGG GTGATTGAGAAGCACATAGTGATTGCGCTGTTCTTAACGATGCTTACTGG CACCGCAGGAAACGCAGGGAATCAGGCAAGTTGGTTGTTCTGAGGGGGGA AACAGGATGGTAGCTCTGCAGGGAAGGGCAATGGACCACAAGATTGGATG GGTAGTAGTTTCTGCTTGGGGGTGTGGGAAAGGAGGGAAGAAAGAAGGGG GGGGATATGGGGGATGTGGTTGAGCAATGGAAATGCATGTGTGTGTGTGT GTGTGTGTTCTTGCATCCTCAGGGACATGGAAGAATTTTGGGAGTACCAT TGAGTGAAGTATAAAATCTGCCCATACACAGCAGCAAAAATATTAATATT CAACATGTTCAACATGCCACTCCTATCCTGCATTCCCAATCTGTAAAGAG CTCGGCAATGGTTATACGTGGACTTGCAACAGGTGAGATCAATGCATCCA ATGCCCGTCAGGTGGTGTTGCGGGAAGCTAAGGCAGCGATGTGTGCAGCA TTGGTGCTCTCTGGAGCTTCGTTCTTGAGGGTGTTGCTGACTCCAGGAGC CTCCATACTGGCTACACTTGCTGTCTCTGTGGCCATGGGTGCGACTGTGG TCGGTGCAGTTATGTTTGGGACTGTGGCTCCTATCCTACTGGATCGATTT GGGGTAAGAGATCTAGAGGGAGGGGGGGGCGAGGGGCAAAGGGGGATATT GAGGTATAATTCAGTGGGAGCATCAAAATATTAAGGTGCCTGTTTGTAGT CATTGTGTGTGGTGGTCAGAGCAATCCACGAGGCACTTGTCCGTTGTGTT GTTCGTTGTGAGGGGCAAGATTTTAGTGGTGGTTCTCTGAGGACCCTTGG GTGACGTGTGGGTCAACTGAATGTGTATATTTCTTCATGTGATACTAACC CTAACCCTAATTAAAATGCCAGCTCTCGTGTGATACTCATATTTACTACT TGAAGCACATGCTCTAGATATGTATTTACAGCATCAAACGTCATTGGAAT GGCGAGCTAGCATGCAAAACAATGAGCTCACAGTGACTCCTGACCACGAG ATACTATGATTTAGGCTCCTTGTATGCACCTGTGGGCATTTCTGATACTC TGAGAGGTGTTCCACCTGCATCGTAGATGGAAACAAAATCCTATGTGCAC ATGCATAGAGTACACATATACACATCGTTAGCATCCCATGGTGGCAATTA CATTTGTTCTTAGAGCACCTCCTTCATGTGATGGACAGCAAGGCTAACTC TATGATGTACATGTTGACCTTGGTTGTGCAGTTTGCATCAGTGTAGACCT ACATCACCAGATGTTGTTCCCCTCCGGCTCTCAGTCACGACTTTTCAAAC TGATTTGCTGACTACCTTAACTCTAGAGTACATTGCAAATTTGACCATGA CTGTGATGGCCCAGTGCTCTGACCCTCCCACTGTTACCATCTTCTCAATG GCAATTGTGTGCCACCTCCCTTGCCTCTTGCCCAACCTAGGTGGATCCAG TGAACTTTGCATCACCTGCACTTGCAACACTTACGGATGTTTCTGGGGTG TTCATCCTTTGCTCAGTTGCAAGCTTGATGCTCGGAGGAGGCTGAATTTG AGCTGGGCAGTGATACCTAGTGTCTAGGTGGGGTGGGAGGAAGAGGAAGG TTGGGGGAGTGGGGTACTGATTTGAGGTCCCCACCACACGCTGAATCATG CAACACAATATTTAGGCTGCCCAGAAGAACTTTCTTGCCTTGCCTATAGG CGATGTTCTGCCAGATTCTGTACAGGACAGTACTGCAGCTTTGTAGGTGT CATTGAGAGGGGAGGGTTGCATAATGAGAGGGAAAGGTTAGAAAACGATA AACTGTAGCTGTGTCTGTGAGTATATGTGTCTAGGTTTGTATGTAGTGAG TGGTGTGATGTAGAACCCGAGATTGATGTTATGTTTGTTGTTATGGATAC TTCAGTTAAGCAGAATTCAATAGTATTCGGAATATTCAGTTTTTAAGCAT GCTTGTGTGTGATGCTTTCCAAAATCCTCAAGAGAGGACAGGATTTACTT GAGCATGCCTTTTCGGAGCCTCAAGGTTCATGTGAAAGATGTGATAGTGG ATGATGTAATTGAAATGCTGTTCAACATACTGGGGTGGTGTGGTGCTGTT GTGGTGCTACACCTCCACCAATCTGTTGCACCGTTAAGAGAGCCTCAGTG TCTCCCACCCTCGAAATAGTTTGGAAGTCTCCCTGTAAGTGTGTGCAGGT GGCATAGGATTGTGACAACCCTTTATGGTGTTGTGTGCAATTTTTTTCTC ATGTAGTACAGTGATCTTTGAAGTAACGAGTTACTGGAGCGCTGAGGGAC CTTAGTGTCCATGATTGGCCAGATCCCGATTTTCCTATCAAGCCACACCC TGTTGGAGAGCTTCCTAGGGCAAGGCACAGCTGCAAGGAACACCACCTTT GTAATGTAACAATTATTCTGTACCTGTGGGGGTTTGGGGTCCTCAGTGGG GTGCTGGTATTCACCTTGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig8174:358..3177+

>mRNA_C-tenellus_contig8174.1.3 ID=mRNA_C-tenellus_contig8174.1.3|Name=mRNA_C-tenellus_contig8174.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=609bp|location=Sequence derived from alignment at C-tenellus_contig8174:358..3177+ (Choristocarpus tenellus KU2346)
ATGGAAATTGAGGCCACAGATGATGTGATGCGCTACTCTGGTTCTGGTGG
AGGGGAGAGTTACTTTGGAACACCTTTGATGCGACTGGTAGCCAGCAGGG
TGGGATGGCTGGTTTCGTTGCTGTGTCTGCAATCCCTCTCATCAGTCATT
CTTCAGCGATATCAGAGGGTGATTGAGAAGCACATAGTGATTGCGCTGTT
CTTAACGATGCTTACTGGCACCGCAGGAAACGCAGGGAATCAGGCAAGTT
GCTCGGCAATGGTTATACGTGGACTTGCAACAGGTGAGATCAATGCATCC
AATGCCCGTCAGGTGGTGTTGCGGGAAGCTAAGGCAGCGATGTGTGCAGC
ATTGGTGCTCTCTGGAGCTTCGTTCTTGAGGGTGTTGCTGACTCCAGGAG
CCTCCATACTGGCTACACTTGCTGTCTCTGTGGCCATGGGTGCGACTGTG
GTCGGTGCAGTTATGTTTGGGACTGTGGCTCCTATCCTACTGGATCGATT
TGGGGTGGATCCAGTGAACTTTGCATCACCTGCACTTGCAACACTTACGG
ATGTTTCTGGGGTGTTCATCCTTTGCTCAGTTGCAAGCTTGATGCTCGGA
GGAGGCTGA
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