mRNA_C-tenellus_contig8163.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8163.6.1
Unique NamemRNA_C-tenellus_contig8163.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: A0A0J1H124_9GAMM (Uncharacterized protein n=1 Tax=Photobacterium aquae TaxID=1195763 RepID=A0A0J1H124_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-9
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   10 QGPPEWSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILAALGASRPGMRQPVVMDEDTILPLSFLSVMDVDLDDGVRIGGGRLSISMSSTNG 315
            Q  P ++G D L +  +DQGN+G GGP      V I+V+PVNDPPVI     +  P        +EDT L +S ++V DVD ++      G +++S+++ NG
Sbjct: 3474 QPDPNFNGDDSLQMVSNDQGNTGTGGPLQDSDDVPITVLPVNDPPVI-----SDVPDQTT----EEDTALVISGIAVSDVDFNEAGS--SGVMTVSLTAGNG 3564          
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: A0A1Y1R2C4_9GAMM (Uncharacterized protein n=1 Tax=Oceanospirillales bacterium LUC14_002_19_P2 TaxID=1940822 RepID=A0A1Y1R2C4_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 1.310e-6
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 1
Query:   10 QGPPEWSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILA----ALGASR-----PGMRQPVVMDEDTILPL-SFLSVMDV--DLDDGVRIGGGRLSISMSS 306
            QG  +++G D L+I V DQG+ G     T   ++AI V+PVNDPPV++      LG S      P    P+ +DE    P  SF   ++V   LDD      G+L++S SS
Sbjct: 1669 QGNQDYNGPDQLTIVVDDQGHHGDQPAKTDSQTIAIDVLPVNDPPVLVVPGVQTLGTSASLIFSPANGNPITVDEPADKPYPSFTDQVEVALTLDDA----SGQLNLSASS 1775          
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: UPI001CA749D7 (Ig-like domain-containing protein n=1 Tax=Leptothermofonsia sichuanensis TaxID=2917832 RepID=UPI001CA749D7)

HSP 1 Score: 55.8 bits (133), Expect = 1.310e-6
Identity = 32/95 (33.68%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   31 GKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILAALGASRPGMRQPVVMDEDTILPLSFLSVMDVDLDDGVRIGGGRLSISMSSTNG 315
            G D++++ V+D GN+G+GGP +  +++A++V P+N  P+I  +L  +  G       +EDT + +S +S+ D+D   G    GG +++S+S+ NG
Sbjct:  693 GVDVINLSVTDNGNTGEGGPLSDTATIAVAVSPINQAPII--SLPPTPTG-------NEDTNVFISGISITDID---GF---GGNVTVSLSAVNG 772          
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: UPI001F1AC7D4 (Ig-like domain-containing protein n=1 Tax=Methylobacterium sp. C25 TaxID=2721622 RepID=UPI001F1AC7D4)

HSP 1 Score: 53.5 bits (127), Expect = 8.430e-6
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   25 WSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILAALGASRPGMRQPVVMDEDTILPLSFLSVMDVDLDDGVRIGGGRLSISMSSTNG 315
            ++G D L+I   D GN+G GG  +   ++AI+VIPVNDPP        + PG  Q   +DEDT L  S      + + D      G L++++SS  G
Sbjct: 1102 YNGADTLTIVTDDNGNTGAGGAKSDTDTLAITVIPVNDPPA------NTVPGPTQ--ALDEDTSLVFSAAGGNGISVSDP---DDGTLTVTLSSAQG 1187          
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: UPI000E6AA3C5 (DUF4347 domain-containing protein n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI000E6AA3C5)

HSP 1 Score: 53.5 bits (127), Expect = 8.480e-6
Identity = 31/78 (39.74%), Postives = 44/78 (56.41%), Query Frame = 1
Query:   19 PEWSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILAALGASRPGMRQPVVMDEDTILPLSFLSVMDVD 252
            P+ +   +L++ V DQGNSG GG  +  S+VA++V PVND PVI A  G         + + ED    L+ +S  DVD
Sbjct: 3757 PDSTAALVLTVAVDDQGNSGTGGAKSASSTVALTVTPVNDAPVITAPSG---------ITVTEDVASALTGISFADVD 3825          
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: UPI001F11D242 (Ig-like domain-containing protein n=1 Tax=Aeromonas media TaxID=651 RepID=UPI001F11D242)

HSP 1 Score: 51.2 bits (121), Expect = 1.760e-5
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 1
Query:   10 QGPPEWSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILAALGASRPGMRQPVVMDEDTILPLSFLSVMDVD 252
            QG  +++G+D L++   D+GN+G GG       + I V PVND PV         P   Q   + ED  LPLS +SV DVD
Sbjct:   14 QGEQDFNGQDALTMVTBDRGNTGSGGALXDTDVLPIEVQPVNDAPV------TQVPDAMQ---VKEDGSLPLSGISVKDVD 85          
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: UPI0019E56639 (Tandem-95 repeat protein n=1 Tax=Leptolyngbyaceae cyanobacterium JSC-12 TaxID=864702 RepID=UPI0019E56639)

HSP 1 Score: 52.0 bits (123), Expect = 2.910e-5
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   13 GPPEWSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILAALGASRPGMRQPVVMDEDTILPLSFLSVMDVDLDDGVRIGGGRLSISMSSTNG 315
            G  ++SG D L+I VSD  N+  G PF+   ++AI+V P ND P++        PG +    ++E+T L +  +SV DVD         G L++++SS++G
Sbjct: 1045 GDRDFSGSDTLTISVSDSLNNTNGIPFSDTETIAITVTPQNDAPILTV------PGAQ---TVNENTDLRILGISVSDVDAT-------GDLTVNLSSSSG 1129          
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Match: A0A5C8UCW7_9HYPH (Tandem-95 repeat protein n=2 Tax=Methylobacteriaceae TaxID=119045 RepID=A0A5C8UCW7_9HYPH)

HSP 1 Score: 51.6 bits (122), Expect = 3.980e-5
Identity = 32/102 (31.37%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   10 QGPPEWSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVILAALGASRPGMRQPVVMDEDTILPLSFLSVMDVDLDDGVRIGGGRLSISMSSTNG 315
            +G   ++G D L+I   D+GN+G GG  +   ++A++V+PV DPP   A +G             EDT L  S  +   V + D   + G  L++++S+T G
Sbjct:  869 RGMANYNGADTLTITTDDKGNTGTGGAKSDTDTIALTVVPVADPPRHTAPVGTQS--------ATEDTTLVFSSTNGNAVSVTD---VDGSGLTVTLSTTQG 959          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8163.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A0J1H124_9GAMM1.930e-937.25Uncharacterized protein n=1 Tax=Photobacterium aqu... [more]
A0A1Y1R2C4_9GAMM1.310e-636.94Uncharacterized protein n=1 Tax=Oceanospirillales ... [more]
UPI001CA749D71.310e-633.68Ig-like domain-containing protein n=1 Tax=Leptothe... [more]
UPI001F1AC7D48.430e-636.08Ig-like domain-containing protein n=1 Tax=Methylob... [more]
UPI000E6AA3C58.480e-639.74DUF4347 domain-containing protein n=1 Tax=Indiocea... [more]
UPI001F11D2421.760e-539.51Ig-like domain-containing protein n=1 Tax=Aeromona... [more]
UPI0019E566392.910e-534.65Tandem-95 repeat protein n=1 Tax=Leptolyngbyaceae ... [more]
A0A5C8UCW7_9HYPH3.980e-531.37Tandem-95 repeat protein n=2 Tax=Methylobacteriace... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8163contigC-tenellus_contig8163:6041..6391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6U7
Model size351
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-12
EggNOG OGs28IVJ@1|root,2QR77@2759|Eukaryota
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790084.5133073-CDS-C-tenellus_contig8163:6040..63911680790084.5133073-CDS-C-tenellus_contig8163:6040..6391Choristocarpus tenellus KU2346CDSC-tenellus_contig8163 6041..6391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8163.6.1prot_C-tenellus_contig8163.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8163 6041..6391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8163.6.1

>prot_C-tenellus_contig8163.6.1 ID=prot_C-tenellus_contig8163.6.1|Name=mRNA_C-tenellus_contig8163.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=117bp
MLMQGPPEWSGKDLLSIFVSDQGNSGQGGPFTVQSSVAISVIPVNDPPVI
LAALGASRPGMRQPVVMDEDTILPLSFLSVMDVDLDDGVRIGGGRLSISM
SSTNGGFLFPSEEKENW
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mRNA from alignment at C-tenellus_contig8163:6041..6391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8163.6.1 ID=mRNA_C-tenellus_contig8163.6.1|Name=mRNA_C-tenellus_contig8163.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=351bp|location=Sequence derived from alignment at C-tenellus_contig8163:6041..6391+ (Choristocarpus tenellus KU2346)
ATGTTAATGCAGGGTCCCCCTGAATGGAGTGGCAAAGACTTGCTGTCAAT TTTTGTCAGTGACCAGGGCAATTCTGGTCAGGGAGGTCCCTTCACAGTTC AGTCGTCTGTAGCAATATCTGTAATCCCTGTGAATGATCCCCCAGTGATC CTGGCCGCCCTAGGGGCCAGTAGACCCGGGATGCGGCAGCCGGTCGTGAT GGATGAGGACACAATTTTACCCCTCTCCTTCCTCTCTGTGATGGATGTCG ACCTGGATGATGGGGTGAGAATAGGAGGGGGGCGCCTGAGTATTTCGATG TCAAGCACTAATGGGGGCTTTCTCTTCCCATCAGAAGAGAAGGAGAACTG G
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Coding sequence (CDS) from alignment at C-tenellus_contig8163:6041..6391+

>mRNA_C-tenellus_contig8163.6.1 ID=mRNA_C-tenellus_contig8163.6.1|Name=mRNA_C-tenellus_contig8163.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=351bp|location=Sequence derived from alignment at C-tenellus_contig8163:6041..6391+ (Choristocarpus tenellus KU2346)
ATGTTAATGCAGGGTCCCCCTGAATGGAGTGGCAAAGACTTGCTGTCAAT
TTTTGTCAGTGACCAGGGCAATTCTGGTCAGGGAGGTCCCTTCACAGTTC
AGTCGTCTGTAGCAATATCTGTAATCCCTGTGAATGATCCCCCAGTGATC
CTGGCCGCCCTAGGGGCCAGTAGACCCGGGATGCGGCAGCCGGTCGTGAT
GGATGAGGACACAATTTTACCCCTCTCCTTCCTCTCTGTGATGGATGTCG
ACCTGGATGATGGGGTGAGAATAGGAGGGGGGCGCCTGAGTATTTCGATG
TCAAGCACTAATGGGGGCTTTCTCTTCCCATCAGAAGAGAAGGAGAACTG
G
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