mRNA_C-tenellus_contig8149.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8149.1.1
Unique NamemRNA_C-tenellus_contig8149.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: D7FWX3_ECTSI (Axonemal 1-beta dynein heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX3_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.730e-42
Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDEDGVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGGV 258
            +QFSLDAYVDLFN+SIE SRTG+EDGV DRC+VINK+HT SVY+YTCRGLFE+HKLLFS+QLCFRIL QEKKVP ++FNF LYGG+
Sbjct: 3944 YQFSLDAYVDLFNASIECSRTGEEDGVADRCDVINKHHTRSVYEYTCRGLFERHKLLFSLQLCFRILEQEKKVPADEFNFLLYGGI 4029
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BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: F0YMC7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMC7_AURAN)

HSP 1 Score: 124 bits (311), Expect = 3.550e-31
Identity = 55/87 (63.22%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDED-GVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGGV 258
            +QFSLDAYVDLFN S++ASR+  ++ G  DRC  IN +HTL+VYQYTCRGLFE+HKLLF++QLC RI+  E K+P+++F+FF +GGV
Sbjct: 1470 YQFSLDAYVDLFNQSMDASRSNAKNVGGADRCKQINAWHTLAVYQYTCRGLFEQHKLLFALQLCLRIMTSENKIPKQEFDFFCHGGV 1556
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BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A7S2GW99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GW99_9STRA)

HSP 1 Score: 120 bits (301), Expect = 7.840e-30
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDEDGVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGGV 258
            +QFSLDAY+ LFNSSI  SRT     V +RC  IN +HT +VY+YTCRGLFE+HKLLFS QLC RI+ +EKK+ + +F+FF YGGV
Sbjct:  322 YQFSLDAYLILFNSSITNSRTAGSQDVAERCKTINNFHTKAVYEYTCRGLFERHKLLFSFQLCTRIMEREKKINKPEFDFFCYGGV 407
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BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A7S1XUA6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUA6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.710e-29
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDEDGVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGGV 258
            +QFSLD YV LF  SI ASR    + V +RCN IN YHTL+VY+Y CRGLFE+HKLLFS+QLCF+IL  + K+P+++F++F +GGV
Sbjct:  249 YQFSLDTYVGLFIDSITASRETAVENVGERCNAINAYHTLAVYRYVCRGLFERHKLLFSLQLCFKILQNDNKLPKDEFDYFCFGGV 334
[Close]
BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A7S3GTN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTN7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.480e-28
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDEDGVVD-RCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYG 252
            +QFSLDAYVDLFN SI++SR G  D  V  RC  IN  HTL+VY+YTCRGLFE HKLLFS+QLC +IL  +  + QE+FNFF  G
Sbjct:  110 YQFSLDAYVDLFNMSIDSSRVGSLDVPVHKRCEDINTEHTLAVYRYTCRGLFEAHKLLFSLQLCLKILETQGNINQEEFNFFSLG 194
[Close]
BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A8J2WYK5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WYK5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.480e-28
Identity = 53/86 (61.63%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDEDGV-VDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGG 255
            +QFSLDAYVDLFN S++ SRT  ++    +RC  IN  HTLSVYQYTCRGLFE+ KLLF++QLC RI+  E KVP+++F+F  YGG
Sbjct: 3719 YQFSLDAYVDLFNQSMDKSRTSPKNITGTERCRQINVAHTLSVYQYTCRGLFERDKLLFALQLCLRIMTSENKVPKQEFDFLCYGG 3804
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BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A482S4J3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4J3_9ARCH)

HSP 1 Score: 111 bits (278), Expect = 1.020e-26
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDED-GVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYG 252
            +QFSLDAYVDLFN SI+ SR G  D  V  RC  IN  HTLSVY+YTCRGLFE HKLLFS+QLCF+I+  + ++ QE+F+FF  G
Sbjct: 2824 YQFSLDAYVDLFNQSIDNSRVGSLDVPVAKRCEDINAEHTLSVYRYTCRGLFEAHKLLFSLQLCFKIMEAQGQINQEEFSFFNLG 2908
[Close]
BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A835Z4V1_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 4.270e-25
Identity = 59/128 (46.09%), Postives = 71/128 (55.47%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASR-------------------------------------------TGDEDGVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGG 255
            +QFSLDAYVDLFN+SI+ SR                                                 V +RC VINK+HTL+VYQYTCRGLFE+HKLLF++QLC RILA+  KVP E+F FFL+GG
Sbjct: 3746 YQFSLDAYVDLFNASIQQSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVRERCQVINKHHTLAVYQYTCRGLFEQHKLLFALQLCLRILARAGKVPPEEFAFFLHGG 3873
[Close]
BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A7S1ZP39_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZP39_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.020e-24
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRT-----GDEDGVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGG 255
            +Q+SLD+YVDLF  +IE SR+       E  +V+R  VIN YHTLSVY+ TC GLFE+HKLLFS+QLCF I+ Q+ ++PQ +F+FF  GG
Sbjct:  174 YQYSLDSYVDLFVKNIEDSRSITKKDSAELSLVERVQVINDYHTLSVYKSTCIGLFERHKLLFSLQLCFNIMKQKGEIPQREFSFFSQGG 263
[Close]
BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Match: A0A067BUJ1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BUJ1_SAPPC)

HSP 1 Score: 105 bits (263), Expect = 1.080e-24
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 FQFSLDAYVDLFNSSIEASRTGDE-----DGVVDRCNVINKYHTLSVYQYTCRGLFEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGG 255
            +QFSLD+YVDLF  SI  SR+  +     D + +R + IN+YHT +VY Y CRGLFE+HKLLFS Q+C R+L   KKVPQ+++ F L GG
Sbjct: 3678 YQFSLDSYVDLFKESIAKSRSARQTLTLTDDLSERISAINEYHTYAVYAYACRGLFERHKLLFSFQMCIRVLQSLKKVPQDEYEFLLKGG 3767
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWX3_ECTSI5.730e-4280.23Axonemal 1-beta dynein heavy chain dynein heavy ch... [more]
F0YMC7_AURAN3.550e-3163.22Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2GW99_9STRA7.840e-3062.79Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XUA6_9STRA3.710e-2960.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3GTN7_9STRA1.480e-2863.53Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A8J2WYK5_9STRA8.480e-2861.63Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A482S4J3_9ARCH1.020e-2663.53Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835Z4V1_9STRA4.270e-2546.09Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1ZP39_9STRA1.020e-2456.67Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A067BUJ1_SAPPC1.080e-2454.44Uncharacterized protein n=2 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8149contigC-tenellus_contig8149:443..1206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWX3
Preferred nameDNAH2
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size258
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0008569,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0031514,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042623,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045505,GO:0048870,GO:0051179,GO:0051674,GO:0051959,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494,GO:1990939
Exons2
Evalue9.39e-43
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size258
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790083.224844-CDS-C-tenellus_contig8149:442..5171680790083.224844-CDS-C-tenellus_contig8149:442..517Choristocarpus tenellus KU2346CDSC-tenellus_contig8149 443..517 -
1680790083.2356746-CDS-C-tenellus_contig8149:1023..12061680790083.2356746-CDS-C-tenellus_contig8149:1023..1206Choristocarpus tenellus KU2346CDSC-tenellus_contig8149 1024..1206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8149.1.1prot_C-tenellus_contig8149.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8149 443..1206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8149.1.1

>prot_C-tenellus_contig8149.1.1 ID=prot_C-tenellus_contig8149.1.1|Name=mRNA_C-tenellus_contig8149.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=86bp
FQFSLDAYVDLFNSSIEASRTGDEDGVVDRCNVINKYHTLSVYQYTCRGL
FEKHKLLFSMQLCFRILAQEKKVPQEDFNFFLYGGV
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mRNA from alignment at C-tenellus_contig8149:443..1206-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8149.1.1 ID=mRNA_C-tenellus_contig8149.1.1|Name=mRNA_C-tenellus_contig8149.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=764bp|location=Sequence derived from alignment at C-tenellus_contig8149:443..1206- (Choristocarpus tenellus KU2346)
TTCCAGTTCTCCCTGGATGCCTACGTGGATCTCTTCAATTCATCAATCGA
GGCCAGTCGCACTGGAGACGAGGATGGTGTAGTGGATCGATGTAACGTGA
TTAACAAGTACCACACTCTCTCCGTCTATCAGTACACCTGCCGTGGGCTG
TTTGAGAAGCACAAATTGCTCTTTTCAATGCAGGTAAGCATCAGATAGAA
CTTAAAAGCCCTCACCACGCCATTTCTCAACACTTTTCACTTTCCTTCAT
CTCTTCTTTCCATATCTGCCATTGGCACAGAATATACAGACATGCATACA
ATCAATACATTGAGTAGAAGAGGAAGGGTAATAAAGATGAGGACTGGGTA
CTAAAGTTGTAGTGAGGAGGACTGTACACTACACTACACTGGAAGGTAGA
ACTATTGACATTTCTGTCTCGATATGTATCCCAGAATCCTAAAACTACAA
TTGGCAATCTCAAGAGAAAGTCAACCTAAAACAAGCAACTATTTGATACT
TCCGCAATGTGACTTCTGGTGTTCACATGTTAAATGAGAGGACATGAGGG
ATAGCAGTACATTTATAACCTTTACATAATCCGCGGTATTAATCTAGAGT
GCTACCAGGTAGATCAAATGGTAATTGCTTGAGAAATTCCCATCTGCTCC
TCTGCGTTTCATGCTCTCATTGATGTCACCTCCTCTTAGCTGTGCTTCCG
CATCTTGGCGCAAGAGAAGAAGGTTCCACAAGAGGACTTCAATTTCTTCC
TCTATGGAGGTGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig8149:443..1206-

>mRNA_C-tenellus_contig8149.1.1 ID=mRNA_C-tenellus_contig8149.1.1|Name=mRNA_C-tenellus_contig8149.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=258bp|location=Sequence derived from alignment at C-tenellus_contig8149:443..1206- (Choristocarpus tenellus KU2346)
TTCCAGTTCTCCCTGGATGCCTACGTGGATCTCTTCAATTCATCAATCGA
GGCCAGTCGCACTGGAGACGAGGATGGTGTAGTGGATCGATGTAACGTGA
TTAACAAGTACCACACTCTCTCCGTCTATCAGTACACCTGCCGTGGGCTG
TTTGAGAAGCACAAATTGCTCTTTTCAATGCAGCTGTGCTTCCGCATCTT
GGCGCAAGAGAAGAAGGTTCCACAAGAGGACTTCAATTTCTTCCTCTATG
GAGGTGTG
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