mRNA_C-tenellus_contig8127.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8127.1.1
Unique NamemRNA_C-tenellus_contig8127.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 5.890e-59
Identity = 92/124 (74.19%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    1 NYFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKFGPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVY 372
            NYFEVT++NPGEKT IG+GLAD D FPATK MPGW+DHSYGYHGDDGR FG   T+  W  W DGDVIGCGFD  R +IWYTRNG LLGDGF  V E+ LVPVVGFHSNGESVR+NFG+ PF Y
Sbjct: 2778 NYFEVTVMNPGEKTTIGIGLADPDVFPATKQMPGWVDHSYGYHGDDGRLFGRAKTDSIWPTWVDGDVIGCGFDSVRGSIWYTRNGELLGDGFVPVYESNLVPVVGFHSNGESVRINFGVVPFAY 2901
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.090e-58
Identity = 92/124 (74.19%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:    1 NYFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKFGPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVY 372
            NYFEVT++NPGEKT IG+GLAD D FPATK MPGW+DHSYGYHGDDGR FG   T+  W  W DGDVIGCGFD  R +IWYTRNG LLGDGF  V E+ LVPVVGFHSNGESVR+NFG+ PF Y
Sbjct: 2519 NYFEVTVMNPGEKTTIGIGLADPDVFPATKQMPGWVDHSYGYHGDDGRLFGRAKTDSIWPTWVDGDVIGCGFDPVRGSIWYTRNGELLGDGFVPVYESNLVPVVGFHSNGESVRINFGVVPFAY 2642
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: A0A835YMD5_9STRA (Ran-binding protein 9-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD5_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.300e-45
Identity = 66/93 (70.97%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:   94 MPGWIDHSYGYHGDDGRKFGPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVY 372
            MPGW++HSYGYHGDDG+KFG   T G W  W +GDVIGCG D +R  IWYTRNG LLGD F  VTE  L PVVGFHSNGE VR+NFGL PFVY
Sbjct:    1 MPGWVEHSYGYHGDDGQKFGANKTPGRWATWAEGDVIGCGVDTERRAIWYTRNGTLLGDAFANVTEDLLCPVVGFHSNGERVRINFGLTPFVY 93
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: A0A482SYR9_9ARCH (B30.2/SPRY domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYR9_9ARCH)

HSP 1 Score: 144 bits (362), Expect = 2.840e-37
Identity = 71/132 (53.79%), Postives = 89/132 (67.42%), Query Frame = 1 
Query:    1 NYFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKFGPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGF---HSNGESVRVNFGLAPFVYTVRMV 387
            NYFEV +   G+   IGVG AD D FP  + MPGWI HSYGYHGDDG+K+G  ST G +  ++ GDVIGCGFD    +I+YTRNG+LLG GF  + + KL PV+GF   H +   V +NFGL PF+YT   +
Sbjct: 1540 NYFEVKMQELGQGD-IGVGFADNDTFPVREQMPGWISHSYGYHGDDGKKYGEHSTSGDFPLFEVGDVIGCGFDKDSRSIFYTRNGVLLGVGFENIEDDKLWPVIGFSNRHDDLAKVSINFGLEPFMYTAESI 1670
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: A0A8J9WNV4_9CHLO (Ran-binding protein 10 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNV4_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 6.780e-29
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 1 
Query:    4 YFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKF-GPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVY 372
            Y+EVT+++ G K +IGVG AD++ F   K  PGW  HSYGYHGDDG+KF   G  E     +  GDVIG G   QR  I++T+NG  LG  F G+T+  L P +G HS GE + VNFG +PF +
Sbjct:   76 YYEVTVLDAGSKGLIGVGFADKN-FKMGK-QPGWEQHSYGYHGDDGKKFHASGQGEDYGPHFSAGDVIGAGIHIQRQEIFFTKNGKNLGTAFRGLTQLPLYPTIGLHSPGECIVVNFGASPFAF 197
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: I0YML3_COCSC (SPRY-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YML3_COCSC)

HSP 1 Score: 115 bits (289), Expect = 8.090e-28
Identity = 62/128 (48.44%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    4 YFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKF---GPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVYTV 378
            Y+EVT+++ GEK +IGVG AD++ F   K  PGW  HSYGYHGDDG+KF   G G   G   ++  GDVIG G   QR  I++T+NG  LG  F G+ +  L P  G HS GE + VNFG +PF + +
Sbjct:   76 YYEVTVLDAGEKGLIGVGFADKN-FKMGK-QPGWEPHSYGYHGDDGKKFHQNGQGEEYGP--QFTLGDVIGAGIHIQRQEIFFTKNGKHLGVAFRGLPQLPLYPTAGLHSPGECIAVNFGASPFAFNL 199
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: A0A8J5XUJ6_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XUJ6_DIALT)

HSP 1 Score: 115 bits (287), Expect = 3.420e-27
Identity = 61/125 (48.80%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:    4 YFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKFGPGSTEGTW--DKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVY 372
            YFE++++NPG +    VG A++  F  T+  PGW  +SYGY  +DGRK+  GS  G         GDVIGCGFDC  STI++TRNG+LLG  F  V   +L+P VG HS  E+VR+NFG  PF +
Sbjct:   59 YFELSVLNPGARGSFAVGFAERS-FELTR-KPGWEPNSYGYFAEDGRKYS-GSERGELYGPPCGGGDVIGCGFDCSTSTIFFTRNGVLLGTAFRAVPPIELLPTVGLHSPNETVRLNFGRQPFAF 180
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: A0A7S4GKM8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GKM8_9EUGL)

HSP 1 Score: 105 bits (262), Expect = 2.080e-24
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 1 
Query:    4 YFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKF-GPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVYTVR 381
            YFEV I++ G    +G+G+  +   P    +PGW   SYGYHGDDG+KF G G+ E     +  GD++GC  +    +I YT+NG+ LG  F  V E +L P+VG  S GE + +N GL PF Y ++
Sbjct:   87 YFEVKIISKGRDGFMGIGVCTKA-VPVAHKLPGWDKGSYGYHGDDGKKFRGCGAGEPYGPVYTTGDIVGCVVNYMAGSIGYTKNGIFLGHAFVDVHERELYPIVGMRSEGECMEINCGLEPFCYDLQ 212
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: A0A372RAZ0_9GLOM (Concanavalin A-like lectin/glucanase domain-containing protein n=7 Tax=Rhizophagus TaxID=1129544 RepID=A0A372RAZ0_9GLOM)

HSP 1 Score: 102 bits (253), Expect = 2.160e-24
Identity = 51/133 (38.35%), Postives = 76/133 (57.14%), Query Frame = 1 
Query:    4 YFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKFGPGSTEG--------TWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVYTV 378
            YFEV+IV+ GE   IG+G      F     +PGW  +++GYHGDDG+KF   S++G        TW      D IGCG +    T +YT+NG+ LG+ F  +T ++  P++G  +  E + VNFG  PF++ +
Sbjct:   72 YFEVSIVDAGESGYIGIGFGVHSAF--LWKLPGWEPNTFGYHGDDGKKFRSSSSKGHNYGPPFTTW------DTIGCGINFFNKTAFYTKNGICLGEAFNEITLSEYYPMIGLRTKSECIEVNFGETPFLFNI 196
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BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Match: S2JAY6_MUCC1 (Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JAY6_MUCC1)

HSP 1 Score: 105 bits (263), Expect = 5.520e-24
Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = 1 
Query:    4 YFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKF-GPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKLVPVVGFHSNGESVRVNFGLAPFVYTV 378
            YFE+ +++ G    IG+G   + +  +    PGW +HS+GYHG++G  F GPG+ +    K+  GD+IGCG D +  + +YT+NG+ LG  F  + +T+L P VGF + GE +  NFG  PF + +
Sbjct:  212 YFEIKVISKGVDGHIGIGFCRRIN--SLDRFPGWEEHSWGYHGENGHVFSGPGTEKAYGPKYGTGDIIGCGIDFRDMSAFYTKNGIYLGSAFKKIKDTELFPFVGFKTPGEKIEANFGAKPFKFDI 335
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVC4_ECTSI5.890e-5974.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE1.090e-5874.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMD5_9STRA3.300e-4570.97Ran-binding protein 9-like protein (Fragment) n=1 ... [more]
A0A482SYR9_9ARCH2.840e-3753.79B30.2/SPRY domain-containing protein n=1 Tax=archa... [more]
A0A8J9WNV4_9CHLO6.780e-2949.19Ran-binding protein 10 n=1 Tax=Coccomyxa sp. Obi T... [more]
I0YML3_COCSC8.090e-2848.44SPRY-domain-containing protein n=1 Tax=Coccomyxa s... [more]
A0A8J5XUJ6_DIALT3.420e-2748.80Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S4GKM8_9EUGL2.080e-2441.73Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A372RAZ0_9GLOM2.160e-2438.35Concanavalin A-like lectin/glucanase domain-contai... [more]
S2JAY6_MUCC15.520e-2438.89Uncharacterized protein n=1 Tax=Mucor circinelloid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8127contigC-tenellus_contig8127:2545..3137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FVC4
Preferred nameHERC1
PFAMsCLTH,HECT,RCC1,SPRY,WD40
Model size390
Max annot lvl2759|Eukaryota
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
Exons2
Evalue9.66e-60
EggNOG OGsCOG5184@1|root,KOG1477@1|root,KOG1426@2759|Eukaryota,KOG1477@2759|Eukaryota
EC2.3.2.26
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Cds size390
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790081.8970022-CDS-C-tenellus_contig8127:2544..26951680790081.8970022-CDS-C-tenellus_contig8127:2544..2695Choristocarpus tenellus KU2346CDSC-tenellus_contig8127 2545..2695 -
1680790081.9111419-CDS-C-tenellus_contig8127:2898..31371680790081.9111419-CDS-C-tenellus_contig8127:2898..3137Choristocarpus tenellus KU2346CDSC-tenellus_contig8127 2899..3137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8127.1.1prot_C-tenellus_contig8127.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8127 2545..3137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8127.1.1

>prot_C-tenellus_contig8127.1.1 ID=prot_C-tenellus_contig8127.1.1|Name=mRNA_C-tenellus_contig8127.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=130bp
NYFEVTIVNPGEKTMIGVGLADQDHFPATKHMPGWIDHSYGYHGDDGRKF
GPGSTEGTWDKWQDGDVIGCGFDCQRSTIWYTRNGMLLGDGFTGVTETKL
VPVVGFHSNGESVRVNFGLAPFVYTVRMV*
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mRNA from alignment at C-tenellus_contig8127:2545..3137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8127.1.1 ID=mRNA_C-tenellus_contig8127.1.1|Name=mRNA_C-tenellus_contig8127.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=593bp|location=Sequence derived from alignment at C-tenellus_contig8127:2545..3137- (Choristocarpus tenellus KU2346)
AATTACTTTGAGGTGACAATTGTCAACCCTGGTGAAAAAACTATGATTGG
GGTTGGACTTGCGGATCAAGATCACTTCCCTGCCACTAAGCACATGCCTG
GATGGATTGACCACTCCTATGGATACCATGGAGATGATGGCCGGAAATTT
GGTCCAGGGAGTACAGAAGGCACCTGGGATAAATGGCAGGATGGTGATGT
CATTGGCTGCGGATTTGATTGTCAGCGATCAACAATTTGGTGAGTTGTTG
TCAATATGTTGCAAATACTGATAAGCTACGAAGTCACCCACAAAAACCCC
TTTTTTTGTCTTATAGGGTAGCTATATATTTCCAGGTGGTGGTATACCTT
AGCATGATCCTTCAAAACATTTTTTTTCAACTCTGAAGTGTGTCTTGTGT
GTGATGCAATTATTTCAATACAATTATTTCAATCTTTCCCAGGTACACTC
GCAATGGAATGCTACTTGGCGATGGCTTCACAGGTGTGACTGAGACTAAG
CTGGTACCAGTGGTGGGCTTTCATAGCAACGGCGAGAGCGTGAGGGTGAA
TTTTGGTTTGGCCCCATTTGTGTACACGGTGAGGATGGTATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8127:2545..3137-

>mRNA_C-tenellus_contig8127.1.1 ID=mRNA_C-tenellus_contig8127.1.1|Name=mRNA_C-tenellus_contig8127.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=390bp|location=Sequence derived from alignment at C-tenellus_contig8127:2545..3137- (Choristocarpus tenellus KU2346)
AATTACTTTGAGGTGACAATTGTCAACCCTGGTGAAAAAACTATGATTGG
GGTTGGACTTGCGGATCAAGATCACTTCCCTGCCACTAAGCACATGCCTG
GATGGATTGACCACTCCTATGGATACCATGGAGATGATGGCCGGAAATTT
GGTCCAGGGAGTACAGAAGGCACCTGGGATAAATGGCAGGATGGTGATGT
CATTGGCTGCGGATTTGATTGTCAGCGATCAACAATTTGGTACACTCGCA
ATGGAATGCTACTTGGCGATGGCTTCACAGGTGTGACTGAGACTAAGCTG
GTACCAGTGGTGGGCTTTCATAGCAACGGCGAGAGCGTGAGGGTGAATTT
TGGTTTGGCCCCATTTGTGTACACGGTGAGGATGGTATGA
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