mRNA_C-tenellus_contig8080.2.2 (mRNA) Choristocarpus tenellus KU2346
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Overview
Homology
BLAST of mRNA_C-tenellus_contig8080.2.2 vs. uniprot
Match: A0A6H5J734_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J734_9PHAE) HSP 1 Score: 296 bits (757), Expect = 4.040e-84 Identity = 243/677 (35.89%), Postives = 304/677 (44.90%), Query Frame = 1
Query: 1 SVAGLLQNPLFPLSAAGG----------FTAIGELLGLVGPVAKGVLEAGGPLTFLAPTDEAFELAISSGALPSRPWLPGGNAS--------LTSSAAEHLLLSHALETLAGA--ILFLPSAVDPFASSFLDESHLPT--FINNTINGTAG---------------------------------------GPDREVTVRVRLVEMGTSSTLPSGAS-IKDKEVYVDNARVYQCVEGLGVGHDCGTRSQASNTFALNGAHLCAVHAIDRVIFPPESGMDIAQVLETTPGLGRFATLLREVGL-----------SVGASSSWSWSGGVG-------SEGDSA------------------------------------FTVFAPTDEALARLEEERPWLFSNSSSGSSSRFGSEGRGSAGGDHLESGDSEEDDGEGQSSVWNPLRELLAYHLVPGPGLFSRYLN-SSQTLPTLALGGLAPLNANFTE---------------------------------GVSLRVNLEECDQIDIPAVNGVIHVLRLTSPGPTLTGDVLRDKQAAAEYATEKKDELVPDCSGGQDCGCRSGDXXXXXXXXLXXXXXXXXXXXXXXKGVLVPDVLELTYAWGFRKTYASVLEAAMGAGAEAAATDVEVSRGMDLAEVLVGPKLHTFFVV 1581
+VAG+L NP FPLSAAGG F A+GEL+ L P+ L GPLT LAPTD AF++ I++G LP RPW + S LT A LLLSH L G +LF P+A DPFAS F D L T + ++ + G G + V V VR+VE A + D+EVYVD ARV+QCV+G GVGHDCGT + SNT+ALNGAHLCAVHA+DRV+FP + D+A +L+ TP L RFA LLRE GL S +SSS+ +S + GDS TVFAPT+ ALARLE ERPWLF NS++ ++ + G+ +AG + G G + W+P+RELLAYHLVPG LFSRY N SS TLALGG AP+ A + G +LRVNL+ C D PA +GV+HVL RD A E D L + G + GVLVPDVLELTYA+GFR TY +++ A A A A + V +A+ L G HT V
Sbjct: 528 TVAGVLLNPPFPLSAAGGXXXXXXXXXGFGALGELVRLAWPLVNTTLTEEGPLTVLAPTDAAFDIVIAAGYLPPRPWYEVNSTSSSSSPSLGLTPERAARLLLSHTLRPAEGEGPLLFTPTAGDPFASGFKDGDRLLTAVVVGGSVASSTGDADDDRSDEHGGGLSSEDGFGGVDXXXXXXXXXXXXXXXGAEANVEVGVRVVEXXXXXXXXXXADGVADREVYVDGARVFQCVDGTGVGHDCGTSPRPSNTYALNGAHLCAVHAVDRVMFPADPSTDLAAILDGTPSLSRFAALLREHGLLAPTSPSLPSSSFSSSSSFVFSAAATGARPATLTRGDSEVVVGXXXXXXXXXXXXXXXXXXXXXHRVPEGSRAPFLTVFAPTNAALARLERERPWLFRNSTAATAVVGDAGGKEAAG-----------ERGVGNADDWSPVRELLAYHLVPGAALFSRYFNESSPPTRTLALGGSAPVAATYITAPATRAYGTPPFGAATGGGGGKGWVSGTSTNGTGGTLRVNLQTCSSTDRPASDGVLHVLAFDD----------RDN------ARETYDFLYGESGSNGSPGSAA--------------------------GVLVPDVLELTYAYGFRATYEAIV-----ATAAAEADGLAVDNTTAVADALRGRAPHTLLAV 1146
BLAST of mRNA_C-tenellus_contig8080.2.2 vs. uniprot
Match: D7FXZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ5_ECTSI) HSP 1 Score: 260 bits (664), Expect = 3.940e-72 Identity = 219/623 (35.15%), Postives = 266/623 (42.70%), Query Frame = 1
Query: 1 SVAGLLQNPLFPLSAAGG----------FTAIGELLGLVGPVAKGVLEAGGPLTFLAPTDEAFELAISSGALPSRPWLPGGNASLTSSAAEHLLLSHALETLAGAILFLPSAVDPFASSFLDESHLPTFINNTINGTAGGPDREVTVRVRLVEMGTSSTLPSGASIKDKEVYVDNARVYQCVEGLGVGHDCGTRSQASNTFALNGAHLCAVHAIDRVIFPPESGMDIAQVLETTPGLGRFATLLREVGLSVGASSSWSWS--------------------------------------------GGVG------SEGDSA--FTVFAPTDEALARLEEERPWLFSNSSSGSSSRFGSEGRGSAGGDHLESGDSEEDDGEGQSSVWNPLRELLAYHLVPGPGLFSRYLN-SSQTLPTLALGGLAPLNANFTE---------------------------------GVSLRVNLEECDQIDIPAVNGVIHVLRLTSPGPTLTGDVLRDKQAAAEYATEKKDELVPDCSGGQDCGCRSGDXXXXXXXXLXXXXXXXXXXXXXXKGVLVPDVLELTYAWGFRKTYASVLEAAMGAGAEAAATDVEVSRGMDLAEVLVGPKLHTFFVV 1581
+VAG+L NP FPLSAAGG F A+GEL+ L P+ L GPLT LAPTD AF++AI++G LP RPW +N T+ +SS+ PS EVYVD ARV+QCV+G GVGHDCGT + SNT+ALNGAHLCAVHA+DRV+FP + D+A +L+ TP L RFA LLRE GL S S GG G SEG A TVFAPT+ ALARLE ERPWLF NS++ +++ G G A G+ G G + W+P+RELLAYHLVPG LFSRY N SS TLALGG AP+ A F G +LRVNL+ C D PA +GV+HVL T + A Y SGG G + GVLVPDVLELTYA+GFR TY +++ A A A A + V +A+ L G HT V
Sbjct: 342 TVAGVLLNPPFPLSAAGGRGGSGGPGSGFGAMGELVRLAWPLVNTTLTEEGPLTVLAPTDAAFDIAIAAGDLPPRPWYE------------------------------------------------------VNSTS-----------------SSSSSPS-------EVYVDGARVFQCVDGTGVGHDCGTSPRPSNTYALNGAHLCAVHAVDRVMFPADPSTDLAAILDGTPSLSRFAALLREHGLLAPPSPSXXXXXXXXXXXXXXARPATLTLGDSEVVVGGSQXXXXXXXXXXXXXXRGGRGRGGHRVSEGSRAPFLTVFAPTNAALARLERERPWLFRNSTAAAAAVVGDAGGKEAAGER----------GVGDADDWSPVRELLAYHLVPGAALFSRYFNESSPPTRTLALGGTAPVAATFITAPASSAYGRPPSRAATVGGAGEGWVSGTSTNGTGGTLRVNLQTCSSTDRPASDGVLHVLAFDDGNNT--------RGAYDVYGR----------SGGAGSGGSAA-------------------------GVLVPDVLELTYAYGFRATYEAIV-----ATAAAEADGLAVGNSAAVADALRGRAPHTLLAV 828
BLAST of mRNA_C-tenellus_contig8080.2.2 vs. uniprot
Match: A0A835Z7H6_9STRA (FAS1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H6_9STRA) HSP 1 Score: 159 bits (403), Expect = 4.510e-38 Identity = 130/401 (32.42%), Postives = 181/401 (45.14%), Query Frame = 1
Query: 25 PLFPLSAAGGFTAIGELLGLVGPVAKGVLEAGG-PLTFLAPTDEAFELAISSGALPSRPWLPGGNASLTSSAAEHLLLSHALETLAGAILFLPSAVDPFASSFLDESHLPTFINNTINGTAGGPDREVTVRVRLVEMGTSSTLPSGASIKDKEVYVDNARVYQCVEGLGVGHDCGTRSQAS----NTFALNGAHLCAVHAIDRVIFPP-ESGMDIAQVLETTPGLGRFATLLREVGLSVGASSSWSWSGGVGSEGDSAFTVFAPTDEALARLEEERPWLFSNSSSGSSSRFGSEGRGSAGGDHLESGDSEEDDGEGQSSVWNPLRELLAYHLVPGPGLFSRYLNSSQTLPTLALGGLAPLNANFT---------EGVSLRVNLEECDQIDIPAVNGVIHVL 1182
P PL+ AG F A GEL+ L G V L AG PLT PTD AF+ AI++G LP RP+ S+TSS A L+L H T G +LF P+A PFAS F D P +T+ G A + + V L ++ ++ +G+ D+EV+++NAR+YQC G GH C S N +ALN LCA+HAID V+ PP + + Q + + G FA LLR VG +A AL+R + PWL+ ++ E++AYH+ P FSRYLN SQ + T AL AP+ A+ G ++ +N + D+ A +GV+HVL
Sbjct: 226 PPEPLAYAGTFAAFGELVALAGDVVNATLSAGDTPLTVFMPTDAAFDAAIAAGHLPHRPF----GQSMTSSEAADLVLYHTAMTDKGPMLFRPTADSPFASDFTDTQ--PIASAHTVAGQA------LQLWVHLSQLNSTHVGAAGSDF-DQEVFLNNARLYQCAVAEGTGHSCAVPPAGSVPPSNAYALNEGTLCALHAIDAVLLPPPRNATGVEQRIVSMNDTGIFAELLRSVG---------------------GLAAYA----ALSRSRADMPWLYEST--------------------------------------ELAAEVVAYHVAPAQVHFSRYLNESQRIVTAALNSSAPVLASAVCDTSDCAAGGGRTVTINGQLAIITDVTAADGVLHVL 550
BLAST of mRNA_C-tenellus_contig8080.2.2 vs. uniprot
Match: W7TNC5_9STRA (Transforming growth beta-68kda n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNC5_9STRA) HSP 1 Score: 155 bits (392), Expect = 2.410e-36 Identity = 136/414 (32.85%), Postives = 188/414 (45.41%), Query Frame = 1
Query: 13 LLQNPLFPLSAAGGFTAIGELLGLVGPVAKGVLEAGGPLTFLAPTDEAFELAISSGALPSRPWLPGGNASLTSSAAEHLLLSHALETLAGAILFLPSAVDPFASSFLDESHLPTFINNTINGTAGGPDREVTVRVRLVEMGTSSTLPSGASIKDKEVYVDNARVYQCVEGLGVGHDCGTRSQASNTFALNGAHLC-AVHAIDRVIFPPESGMDIAQVLETTPGLGRFATLLRE--------------VGLSVGASSSWSWSGGVGSEGDSAFTVFAPTDEALARLEEERPWLFSNSSSGSSSRFGSEGRGSAGGDHLESGDSEEDDGEGQSSVWNPLRELLAYHLVPGPGLFSRYLNSSQTLPTLALGGLAPLNANFTEGVS-----------LRVNLEECDQIDIPAVNGVIH 1176
++ +P L+AAG F+ + +LL L GGP TFLAPTD AF A +SG LPS L G +A + S L A+++ LF P DP+A F D+ F + T G R + V RLV ++S G I D V+++NARVYQCVEG G GHDCG + SNT+++N HL VHA+D V PP++G + Q L P + F LL+ S +SSS S G E FT++ P+++A+A L E RPWL +S + + E++ YH+VP ++R+ + S+ LPTLA G A + N T S L VN DI A NGV+H
Sbjct: 370 VVASPPPVLAAAGNFSILSQLLYTASISEAPELATGGPFTFLAPTDAAFAAAFASGQLPSLAVLLGDSALVAS-----LCRYWAVDSSVHLYLFSP---DPYADPFKDD-----FADGT--SLLDGQKRTLWVH-RLVSSDSTSL---GGKINDTSVFINNARVYQCVEGKGWGHDCGAQPTPSNTYSINDGHLVNIVHALDAVPLPPKAGT-LFQTLLQDPDVSSFVDLLQACPSGIDLVSKLNATTHTSPSSSSSSSTLTGRVDESQKLFTLWVPSNQAIAELNETRPWLLDSSEA--------------------------------------IDEVVRYHIVPQLW-YARWTHPSRALPTLAFDGEAQILTNATTWNSPSAAFINSHDRLYVNRIRVTDTDIAASNGVVH 724
BLAST of mRNA_C-tenellus_contig8080.2.2 vs. uniprot
Match: A0A3R7LXS8_PENVA (Uncharacterized protein n=3 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7LXS8_PENVA) HSP 1 Score: 62.0 bits (149), Expect = 2.270e-6 Identity = 65/225 (28.89%), Postives = 97/225 (43.11%), Query Frame = 1
Query: 565 NTFALNGAHLCA----VHAIDRVIFPPESGMDIAQVLETTPGLGRFATLLREVGLSVGASSSWSWSGGVGSEGDSAFTVFAPTDEALARLEEERPWLFSNSSSGSSSRFGSEGRGSAGGDHLESGDSEEDDGEGQSSVWNP--LRELLAYHLVPGPGLFSRYLNSSQTLPTLALGGLAPLNANFTEGVSLRVNLEECDQIDIPAVNGVIHVLRLTSPGPTLTGDV 1221
N A+ A + A +H ID+V+ PPE ++A+VL T+ G + L+ GL+ S+ GG FTVFAPT+EA L+ E ++ + +P L+++L YH+VPG L S S + T A GG +N N G ++ +N + + DIPA NGVIHVL P G++
Sbjct: 111 NDVAVTQADIMARNGVIHVIDQVLMPPEDVGNLAEVL-TSQGFSQLVDLVVTAGLADTVSN-----GG-------PFTVFAPTNEAFQALDPELV---------------------------------------KALLADPERLKDVLLYHVVPGAVLSSDL--SDGLVATTAQGGDLRVNVN---GNAVTINDVDVTRADIPASNGVIHVLNQVLLPPENLGNL 278
BLAST of mRNA_C-tenellus_contig8080.2.2 vs. uniprot
Match: A0A849H1S0_9BACT (Fasciclin domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A849H1S0_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 9.110e-5 Identity = 79/286 (27.62%), Postives = 110/286 (38.46%), Query Frame = 1
Query: 487 VDNARVYQCVEGLGVGHDCGTRSQASNTFALNGAHLCA----VHAIDRVIFPPESGMDIAQVLETTPGLGRFATLLREVGLSVGASSSWSWSGGVGS---EGDSAFTVFAPTDEALARLEEERPWLFSNSSSGSSSRFGSEGRGSAGGDHLESGDSEEDDGEGQSSVWNP----LRELLAYHLVPGPGLFSRYLNSSQTLPTLALGGLAPLNANFTEGVSLRVNLEECDQIDIPAVNGVIHVLRLTSPGPTLTGDVLRDKQAAAEYATEKKDELVPDCSGGQDCGC 1311
V N R + +EG VG T N + A + A +H ID V+ P + E G G F TLL VG + G+GS EG FTVFAPTD+A ARL DG +S + L E+L YH+V G + L + + L G+ P+ ++G +LRVN + DI A NGV+HV+ P ++ +QAA E + + VP + GQ C
Sbjct: 110 VKNLRSAETLEGQRVGISHETGKIKINDATVISADIRASNGIIHVIDAVLLPESKSIP-----EIAEGAGVFNTLLAAVGAA-----------GLGSTLTEGG-PFTVFAPTDDAFARLP---------------------------------------DGTVESLLQEENLPKLAEILKYHVVSGRVYADQALEARRAS---TLAGI-PVQIRVSDG-TLRVNDSQITATDIQASNGVVHVIDAVLLPPEMSPK----QQAARELMSLAIERGVPLFNNGQAEAC 330 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8080.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8080.2.2 >prot_C-tenellus_contig8080.2.2 ID=prot_C-tenellus_contig8080.2.2|Name=mRNA_C-tenellus_contig8080.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=554bp SVAGLLQNPLFPLSAAGGFTAIGELLGLVGPVAKGVLEAGGPLTFLAPTDback to top mRNA from alignment at C-tenellus_contig8080:580..5623- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig8080.2.2 ID=mRNA_C-tenellus_contig8080.2.2|Name=mRNA_C-tenellus_contig8080.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5044bp|location=Sequence derived from alignment at C-tenellus_contig8080:580..5623- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig8080:580..5623- >mRNA_C-tenellus_contig8080.2.2 ID=mRNA_C-tenellus_contig8080.2.2|Name=mRNA_C-tenellus_contig8080.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1662bp|location=Sequence derived from alignment at C-tenellus_contig8080:580..5623- (Choristocarpus tenellus KU2346)back to top |