mRNA_C-tenellus_contig8049.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8049.1.1
Unique NamemRNA_C-tenellus_contig8049.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: UPI000D1C79E2 (uncharacterized protein LOC112348592 n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C79E2)

HSP 1 Score: 197 bits (502), Expect = 4.510e-60
Identity = 106/200 (53.00%), Postives = 140/200 (70.00%), Query Frame = 1
Query:   28 LAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGDK--SWKNVASALSKNELLELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            +  AFG   ++K++ D+V NFDF  I V SK  K+ L   LAPSFG LN E+VK MD+ LKV I+ TT L+A +  K  +W+ V S   +N L+E M D  ++R DK     ++ FK DGSPD AIVK VQ WFVNLI D+DVL +T IDIKV+ +IVA SGA++ SF+ FF+KHE HE+T+++IGVL YPD+ +PYFKV
Sbjct:    7 MQGAFG---SLKEIGDIVANFDFSKIDVRSKSAKDYLHTNLAPSFGTLNAETVKKMDEVLKVCISGTTDLLAKVAPKERTWEKVNSMFMQNPLVEPMGDG-ISRADKFLNKSSSDFKIDGSPDPAIVKAVQVWFVNLIADEDVLKSTKIDIKVVGEIVAQSGATITSFENFFAKHEHHEKTIIDIGVLRYPDMQNPYFKV 202          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A2R6WK78_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WK78_MARPO)

HSP 1 Score: 194 bits (492), Expect = 1.380e-58
Identity = 102/199 (51.26%), Postives = 139/199 (69.85%), Query Frame = 1
Query:   28 LAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGDKSWKNVASALSKNELLELMPDS-EVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            + AAFG     KD+  +V  FD+   +V S   +E L   LAPS+GKL  +SVK +D+ LK++IA T   I  + DKSWK+V   + ++ LLE  PDS EV R DKL K+ ++AFKFDGSPD  IV+EV++WF  LI D DVL  T IDI  LAKIVA SGA+++SF+ F++KHE+HE+T+++IGVL +PD + PYFK+
Sbjct:    8 ILAAFG---GAKDIGTIVSTFDWSKCNVRSSHSEEYLHTDLAPSYGKLTSDSVKALDENLKIMIAGTLTTIGKLTDKSWKSVLGTMMQHPLLE--PDSAEVARADKLIKASSSAFKFDGSPDAQIVREVKTWFTKLIADADVLQQTRIDIDTLAKIVAQSGATIDSFETFWAKHEQHEQTLVDIGVLRFPDFERPYFKL 201          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A0H2R076_9AGAM (Uncharacterized protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2R076_9AGAM)

HSP 1 Score: 194 bits (494), Expect = 1.390e-58
Identity = 104/205 (50.73%), Postives = 141/205 (68.78%), Query Frame = 1
Query:   28 LAAAFGLP---TNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANM--GDKSWKNVASALSKNELLELM--PDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            +A+ FG     T V+ + +LVKNFDF  I V    + + L  GLAPSFG L RES+K MD++LK+IIA T R +  +   D+SW  V S   +N L+E M  P + + R DKL K G+ AFK +   D  +V+EV +WF  LI D+DVL +T IDIKVLA IVA +GA+++SF+AFF+K+E HE+T+++IGVL YPDIDHP+FKV
Sbjct:   21 VASIFGAKDGKTAVETIGNLVKNFDFSKIDVKDNTRDDFLHTGLAPSFGTLTRESIKGMDEQLKIIIAATNRELEKVPAADRSWDKVISVFMQNPLIEPMDTPQANIARADKLIKKGSNAFKVEREHDDGVVREVLAWFTQLIGDEDVLNSTKIDIKVLADIVATTGAAIDSFEAFFAKNEHHEKTVVDIGVLRYPDIDHPFFKV 225          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A3N2PT46_9PEZI (Uncharacterized protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PT46_9PEZI)

HSP 1 Score: 193 bits (490), Expect = 3.020e-58
Identity = 100/207 (48.31%), Postives = 140/207 (67.63%), Query Frame = 1
Query:    1 MAAFSGSSSLAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGDKSWKNVASALSKNELLELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            MAA      + AAFG   NV DV D++  FDF  + V +   +E L   LAPS+GKL   S++ +DD LK++++ T + +A + +K W +V   + +N LLE    SE++R D L K   A FKFDGSPD AIV EVQSWF  LI D+DVL +T ID+ ++A+IVA SGA+V+SF  F++K ERH +TM++IGVL +PD+DHP+FK+
Sbjct:    1 MAAIIVGPLIKAAFG--ENVSDVADVILGFDFSKMDVTTTHSEEYLHTELAPSYGKLTSSSLEELDDHLKIMMSGTMKSLAKLENKDWASVVGTMMQNPLLET-DGSEIDRSDMLIKDSVADFKFDGSPDSAIVSEVQSWFTKLINDEDVLLSTKIDLPIMAQIVASSGATVDSFLNFWAKRERHSQTMVDIGVLRFPDVDHPHFKL 204          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A2R6X9X0_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X9X0_MARPO)

HSP 1 Score: 191 bits (486), Expect = 1.140e-57
Identity = 99/188 (52.66%), Postives = 133/188 (70.74%), Query Frame = 1
Query:   61 KDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGDKSWKNVASALSKNELLELMPDS-EVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            KD+  +V NFD+   SV    + E L   LAP++G+L  ES+K +D+ LK++IA T   I  + DKSWK+V S + ++ LL  +PDS EV R DKL K  ++AFKFDGSPD  IV+EV+SWF  L+ D DVL  T IDI +LAKIVA SGA+V SF+ F++K E+HE+T++EIGVL +PD  HPYFK+
Sbjct:   16 KDIGTIVSNFDWSKCSVRDSHRNEYLQTNLAPAYGELTDESIKDLDNSLKIMIAGTLISIGKLTDKSWKSVLSTMMQHPLL--VPDSDEVARADKLIKESSSAFKFDGSPDAQIVREVKSWFTTLVGDSDVLQQTRIDIGILAKIVASSGAAVESFETFWAKREKHEQTLVEIGVLRFPDRTHPYFKL 201          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: UPI000D1C4205 (uncharacterized protein LOC112348676 n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C4205)

HSP 1 Score: 191 bits (485), Expect = 1.660e-57
Identity = 102/200 (51.00%), Postives = 139/200 (69.50%), Query Frame = 1
Query:   22 SSLAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGDK--SWKNVASALSKNELLELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYF 615
            +++  AFG   ++K++ D+V NFDF  I V SK  ++ L   L PSFG LN E+VK MD+ LKV I+ TT L+A +  K  +W+ V S   +N L+E M D  ++R DK     +  FKFDGSPD AIVK VQ+WFVNLI D+DVL +T IDI+VL +IVA SGA++NSFK F +K+E HE+T+++I VL YPD+ +PYF
Sbjct:    5 ATMQGAFG---SLKEIGDIVANFDFSKIDVRSKSAEDYLHTNLTPSFGTLNAETVKKMDEVLKVCISGTTTLLAKVPPKERTWEKVNSMFMQNPLVEPMGDG-ISRADKFLNKSSGDFKFDGSPDAAIVKAVQTWFVNLIADEDVLKSTKIDIEVLGRIVAQSGATINSFKTFLAKNEHHEKTVIDIRVLMYPDMQNPYF 200          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A401GW53_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GW53_9APHY)

HSP 1 Score: 191 bits (484), Expect = 2.430e-57
Identity = 99/201 (49.25%), Postives = 139/201 (69.15%), Query Frame = 1
Query:   25 SLAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGD--KSWKNVASALSKNELLELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            S+A  FG   + KD+ +++K+FDF  ++V    + + L  GLAPSFG L+RES+K +D++LKV+I  TT+LIA M    +SW N+ S L +N L+E + D  ++R DKL K G   FKFDG+P+ A+V+EV +WFV LI D+DVL +T IDI V+  IVA +GA+V S +    K E H +T+++IGVL YPD DHPYFKV
Sbjct:    8 SIANVFG---STKDIGEILKSFDFNQMNVKDSSRDDHLNIGLAPSFGTLDRESIKNVDEKLKVMIVGTTKLIAKMPPHKRSWDNIVSVLMQNPLIEPLDDG-ISRADKLIKEGVHFFKFDGAPELAVVREVHNWFVALIADEDVLNSTKIDIDVMGSIVAQTGATVVSLETLIYKQESHSKTLVDIGVLRYPDPDHPYFKV 204          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A2C6ADT7_9HYPO (Uncharacterized protein n=1 Tax=Cordyceps sp. RAO-2017 TaxID=2004951 RepID=A0A2C6ADT7_9HYPO)

HSP 1 Score: 190 bits (482), Expect = 3.020e-57
Identity = 102/207 (49.28%), Postives = 143/207 (69.08%), Query Frame = 1
Query:    1 MAAFSGSSSLAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGDKSWKNVASALSKNELLELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            MAA +G   +A  FG      ++  +V+NFDF  + V  ++  + L   LAPSFGKLN+ES+  MDD LK++IA T + +    DKSWK V S + +N+LLE+   +EV R DKL K  +  FKFDGSPD  IV+EV++WF  LI DDDVL +T IDI VLA+IV  +GA+++SF+  F+KHE HE+T+++IGV+ +PDID P+FK+
Sbjct:    1 MAAIAGPL-VANVFG---KTGEIGAIVQNFDFKKMEVREEKSADFLHTELAPSFGKLNKESLLKMDDRLKIMIAGTMKALGKQTDKSWKAVLSTMMQNDLLEV-DRAEVARADKLIKESSNDFKFDGSPDLNIVREVKTWFTKLIADDDVLQSTKIDIDVLARIVGQTGATIDSFETVFAKHEYHEQTLVDIGVMRFPDIDQPFFKL 202          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A2R6WAE8_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WAE8_MARPO)

HSP 1 Score: 189 bits (481), Expect = 6.490e-57
Identity = 99/198 (50.00%), Postives = 137/198 (69.19%), Query Frame = 1
Query:   28 LAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFGKLNRESVKTMDDELKVIIATTTRLIANMGDKSWKNVASALSKNELLELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            + +AFG     +D+  +V  F++   +V S    E L   LAPS+G L  +SVK +D+ LK++IA T   I  + DKSWK++ S + ++ELLE     EV R DKL K  ++ FKFDGSPD  IV+EV+SWF  LI D+DVL  T IDI  LAKIVA SGA+V+SF+AF+ KHE+HE+T+++IGVL +PD++HPYFK+
Sbjct:    8 ILSAFG--GGKEDIGSIVSTFNWSKCNVRSSHSDEYLHTNLAPSYGDLTSDSVKALDENLKIMIAGTLITIGKLADKSWKSILSTMMQHELLEPF-HKEVARSDKLIKESSSDFKFDGSPDALIVREVKSWFSKLIDDEDVLNQTKIDINTLAKIVAQSGAAVDSFEAFWVKHEKHEQTLVDIGVLRFPDLEHPYFKL 202          
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Match: A0A067T3Q7_GALM3 (Uncharacterized protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T3Q7_GALM3)

HSP 1 Score: 188 bits (477), Expect = 2.930e-56
Identity = 104/204 (50.98%), Postives = 138/204 (67.65%), Query Frame = 1
Query:   25 SLAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGLAPSFG---KLNRESVKTMDDELKVIIATTTRLIANMG--DKSWKNVASALSKNELLELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDVLAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDIDHPYFKV 621
            SLAA FG     K + D+VK FDF  + V    + + L   LAPS+G   KL   ++K MDD LK++IA T + ++ +   D+SW N+ S L +N LLE   D+ ++R DKL KSGT  FKFDGSPD  IV EVQ+WFV LI D DVL +T IDI VL +IVA +GA+V+SF+ FF K ERHE+T+++IGVL +PD D P+F+V
Sbjct:    7 SLAAVFG---GEKSIGDMVKGFDFSKMDVKDDTRNDHLHLDLAPSYGPEGKLTSAAIKCMDDNLKIMIAGTMKSLSALKPEDRSWANIMSTLMQNPLLEPETDA-ISRSDKLIKSGTNVFKFDGSPDATIVNEVQAWFVGLISDKDVLDSTKIDIHVLGEIVAQTGATVDSFETFFGKKERHEKTIVDIGVLRFPDQDRPHFQV 206          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8049.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000D1C79E24.510e-6053.00uncharacterized protein LOC112348592 n=8 Tax=Selag... [more]
A0A2R6WK78_MARPO1.380e-5851.26Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A0H2R076_9AGAM1.390e-5850.73Uncharacterized protein n=1 Tax=Schizopora paradox... [more]
A0A3N2PT46_9PEZI3.020e-5848.31Uncharacterized protein n=1 Tax=Sodiomyces alkalin... [more]
A0A2R6X9X0_MARPO1.140e-5752.66Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
UPI000D1C42051.660e-5751.00uncharacterized protein LOC112348676 n=3 Tax=Selag... [more]
A0A401GW53_9APHY2.430e-5749.25Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A2C6ADT7_9HYPO3.020e-5749.28Uncharacterized protein n=1 Tax=Cordyceps sp. RAO-... [more]
A0A2R6WAE8_MARPO6.490e-5750.00Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A067T3Q7_GALM32.930e-5650.98Uncharacterized protein n=1 Tax=Galerina marginata... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8049contigC-tenellus_contig8049:1694..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5127.CCT69218
Model size621
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.51e-55
EggNOG OGs2D030@1|root,2SCKW@2759|Eukaryota,3AKU3@33154|Opisthokonta,3PDPX@4751|Fungi,3R3T4@4890|Ascomycota
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790077.270223-CDS-C-tenellus_contig8049:1693..18751680790077.270223-CDS-C-tenellus_contig8049:1693..1875Choristocarpus tenellus KU2346CDSC-tenellus_contig8049 1694..1875 -
1680790077.2816696-CDS-C-tenellus_contig8049:2563..30021680790077.2816696-CDS-C-tenellus_contig8049:2563..3002Choristocarpus tenellus KU2346CDSC-tenellus_contig8049 2564..3002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8049.1.1prot_C-tenellus_contig8049.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8049 1694..3002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8049.1.1

>prot_C-tenellus_contig8049.1.1 ID=prot_C-tenellus_contig8049.1.1|Name=mRNA_C-tenellus_contig8049.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=207bp
MAAFSGSSSLAAAFGLPTNVKDVKDLVKNFDFGTISVVSKQKKEGLVFGL
APSFGKLNRESVKTMDDELKVIIATTTRLIANMGDKSWKNVASALSKNEL
LELMPDSEVNRVDKLSKSGTAAFKFDGSPDRAIVKEVQSWFVNLIKDDDV
LAATGIDIKVLAKIVAGSGASVNSFKAFFSKHERHERTMLEIGVLSYPDI
DHPYFKV
back to top

mRNA from alignment at C-tenellus_contig8049:1694..3002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8049.1.1 ID=mRNA_C-tenellus_contig8049.1.1|Name=mRNA_C-tenellus_contig8049.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1309bp|location=Sequence derived from alignment at C-tenellus_contig8049:1694..3002- (Choristocarpus tenellus KU2346)
ATGGCAGCCTTTTCGGGATCGTCATCACTTGCCGCTGCCTTTGGGCTACC TACCAACGTGAAAGATGTGAAGGATTTGGTCAAAAATTTCGATTTTGGCA CGATTAGCGTTGTAAGCAAGCAGAAAAAGGAAGGTCTTGTCTTCGGGCTC GCGCCCTCTTTCGGCAAGCTCAACAGGGAGAGCGTGAAGACAATGGATGA TGAATTGAAGGTCATCATTGCGACTACTACACGACTCATTGCCAACATGG GAGACAAGTCCTGGAAGAACGTTGCGTCCGCCCTATCTAAAAACGAACTG CTGGAACTCATGCCTGATAGCGAGGTGAATAGGGTGGACAAGCTCAGTAA AAGTGGCACCGCGGCCTTCAAGTTCGATGGGAGTCCAGACAGAGCTATCG TGAAGGAGGTTCAATCATGGTTCGTCAACCTAATAAAAGGTGAGCTTCTA CGACTGGTTTGATAGTCAGTACAGTCGTAATCGGCGAACCACAGATCTAC GATAGATTCAAGTCAGTCCCGTTGTTGAGCCACTACTACGTAGGAAAAAA CCTGAGTGCGTCCGGAGAACACTTGCTCTACTGGTTATTACAAGACTCGT TTTTTGAATCATCAAACCCATTATCCACTACTACTCGTTATTATACTCTT ACTTTCCAATGTGTGAACAACTTGCAAATTGACTCAAAGAGTACTGTGAA AAATTATATACTCCAAGACAAATTGTGTTAATAATTTAGGGCAATTTCTT CTTCACCCTACATCATCTCGAATGCTCCTACCCTAGCGAGGGAAAGCGAA CAATCTTCTTCGCTTATGGGACATACCGATTCTCTGTGGCTTGACTCCAT AATCCTTGACTGTGTTTGATGCAGGATTTCGATATCTTTGTTGAAGTATT GCGCACTTCTTCATTTTTGTTTGACCCGATTTCATTTCCATCATCATACC TGTACGATGGATCGGTGTTGACTTGATCTATGCTTCTTGACGACCTAGGA TAAGGTATGAAAAATATTACGTGTGTATGTGATAAACACCTGATGATGAA ATCAATGGGCCAAGCCAACAGGCAGTGTTGACTACTGACGTTTCTTCCTA CTCCACACTCGACCACTGATCTTGCAGATGACGATGTTCTCGCAGCAACT GGAATTGACATAAAAGTGTTGGCAAAAATCGTGGCTGGCTCTGGGGCCTC GGTCAATTCGTTTAAAGCCTTTTTCAGCAAGCATGAGCGCCATGAGCGGA CCATGCTCGAGATTGGGGTCCTGAGTTATCCTGATATTGACCACCCCTAC TTCAAGGTC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8049:1694..3002-

>mRNA_C-tenellus_contig8049.1.1 ID=mRNA_C-tenellus_contig8049.1.1|Name=mRNA_C-tenellus_contig8049.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=621bp|location=Sequence derived from alignment at C-tenellus_contig8049:1694..3002- (Choristocarpus tenellus KU2346)
ATGGCAGCCTTTTCGGGATCGTCATCACTTGCCGCTGCCTTTGGGCTACC
TACCAACGTGAAAGATGTGAAGGATTTGGTCAAAAATTTCGATTTTGGCA
CGATTAGCGTTGTAAGCAAGCAGAAAAAGGAAGGTCTTGTCTTCGGGCTC
GCGCCCTCTTTCGGCAAGCTCAACAGGGAGAGCGTGAAGACAATGGATGA
TGAATTGAAGGTCATCATTGCGACTACTACACGACTCATTGCCAACATGG
GAGACAAGTCCTGGAAGAACGTTGCGTCCGCCCTATCTAAAAACGAACTG
CTGGAACTCATGCCTGATAGCGAGGTGAATAGGGTGGACAAGCTCAGTAA
AAGTGGCACCGCGGCCTTCAAGTTCGATGGGAGTCCAGACAGAGCTATCG
TGAAGGAGGTTCAATCATGGTTCGTCAACCTAATAAAAGATGACGATGTT
CTCGCAGCAACTGGAATTGACATAAAAGTGTTGGCAAAAATCGTGGCTGG
CTCTGGGGCCTCGGTCAATTCGTTTAAAGCCTTTTTCAGCAAGCATGAGC
GCCATGAGCGGACCATGCTCGAGATTGGGGTCCTGAGTTATCCTGATATT
GACCACCCCTACTTCAAGGTC
back to top