mRNA_C-tenellus_contig8040.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8040.2.1
Unique NamemRNA_C-tenellus_contig8040.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: D7FQZ2_ECTSI (Signal peptidase complex subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ2_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.320e-25
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  727 LQAIGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRKGVKPVGAAAD 921
            L A+GWVVGF+ GDF  T+ GW AG+ +S++LVVPDWP FN++PTKWLD LPPR+GV PVGAAA+
Sbjct:   20 LGAVGWVVGFVMGDFMYTLAGWGAGMALSMILVVPDWPMFNRNPTKWLDRLPPREGVMPVGAAAE 84
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: A0A7R9UF33_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF33_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.440e-15
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  736 IGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRKGVKPV 906
            I W++GF   DF+ TV+GW  G+ ++ LL VPDWPWFN+HP +WLD +P   G +P 
Sbjct:   23 IAWIIGFFQADFQTTVIGWGIGLALATLLCVPDWPWFNRHPIRWLDHIP---GAEPA 76
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: A0A7S1TSQ8_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSQ8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.540e-14
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:  733 AIGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRKGVKPVG 909
            AI W++GF   DF++TV+GW  GV ++ LL VPDWPWFN++P +WL+ +P   G +PVG
Sbjct:   41 AIAWMIGFFKEDFQVTVIGWGIGVLLATLLCVPDWPWFNRNPIRWLEHIP---GAEPVG 96
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: B7G343_PHATC (Signal peptidase complex subunit 1 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G343_PHATC)

HSP 1 Score: 75.5 bits (184), Expect = 7.900e-14
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  724 ALQAIGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRK 891
            A  A+GW++GF   DF +    W  GV ISI+L VPDWP++N+HP +WL+S+P R+
Sbjct:   19 AFGAVGWIIGFFQQDFLIVFQAWLVGVVISIILCVPDWPFYNRHPIQWLESVPDRR 74
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: A0A1Z5KKY6_FISSO (Signal peptidase complex subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKY6_FISSO)

HSP 1 Score: 74.3 bits (181), Expect = 2.220e-13
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  736 IGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRK 891
            IGWV+G+   DF +    W AGV +S++L VPDWP++N+HP KWL+S+P R+
Sbjct:   23 IGWVIGYFQEDFTVVFQAWLAGVVLSVILCVPDWPFYNRHPIKWLESVPDRR 74
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: A0A6U3TG41_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3TG41_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.870e-13
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  724 ALQAIGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSL 879
            A  A GW+ G++  DFK T+  W  GV IS++L VPDWPWFN++P +W DS+
Sbjct:   19 AFGAFGWIWGYVEKDFKFTMYSWGVGVAISVVLCVPDWPWFNRNPVEWRDSI 70
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: A0A1E7F4F8_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4F8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.750e-13
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  727 LQAIGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRKGVKPVG 909
            L  +GWV+G+   +F +    W  GV IS +L VPDWP +N+HP KWLDS+P RK V   G
Sbjct:   20 LGGVGWVIGYFRQEFFIVFKFWLVGVVISAVLCVPDWPMYNKHPIKWLDSVPDRKSVSSSG 80
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: A0A7R9W954_9STRA (Signal peptidase complex subunit 1 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W954_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.270e-12
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  733 AIGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRK 891
            A+GWV+G++  DF      W  GV +S +L VPDWP++N+HP KWL+S+P R+
Sbjct:   49 AVGWVIGYVKQDFTYVFYSWGIGVILSCILCVPDWPFYNRHPVKWLESVPERR 101
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: A0A448YY69_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY69_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.930e-12
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  736 IGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRKG 894
            +GWV+G+   +F +    W  GV +S +L VPDWP++N+HP KWLDS+P R+G
Sbjct:   23 VGWVIGYFRQEFFIVFKFWLVGVVLSTVLCVPDWPFYNRHPIKWLDSVPDRRG 75
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BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Match: B8C1V5_THAPS (Signal peptidase complex subunit 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1V5_THAPS)

HSP 1 Score: 67.8 bits (164), Expect = 5.720e-11
Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  733 AIGWVVGFIYGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSL 879
            +IGW+ G+   DF      W  GV IS++L VPDWP FN+HP KWL+S+
Sbjct:   22 SIGWIYGYFLQDFTYVFYSWCVGVAISVVLCVPDWPIFNKHPVKWLESV 70
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8040.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ2_ECTSI1.320e-2567.69Signal peptidase complex subunit 1 n=2 Tax=Ectocar... [more]
A0A7R9UF33_9STRA7.440e-1550.88Signal peptidase complex subunit 1 n=1 Tax=Pinguio... [more]
A0A7S1TSQ8_9STRA1.540e-1452.54Signal peptidase complex subunit 1 n=1 Tax=Phaeomo... [more]
B7G343_PHATC7.900e-1450.00Signal peptidase complex subunit 1 n=2 Tax=Phaeoda... [more]
A0A1Z5KKY6_FISSO2.220e-1351.92Signal peptidase complex subunit 1 n=2 Tax=Fistuli... [more]
A0A6U3TG41_9STRA2.870e-1351.92Signal peptidase complex subunit 1 n=1 Tax=Dictyoc... [more]
A0A1E7F4F8_9STRA4.750e-1349.18Signal peptidase complex subunit 1 n=1 Tax=Fragila... [more]
A0A7R9W954_9STRA3.270e-1249.06Signal peptidase complex subunit 1 n=1 Tax=Pseudic... [more]
A0A448YY69_9STRA6.930e-1249.06Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8C1V5_THAPS5.720e-1151.02Signal peptidase complex subunit 1 n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8040contigC-tenellus_contig8040:2568..5687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQZ2
Preferred nameSPCS1
PFAMsSPC12
Model size939
Max annot lvl2759|Eukaryota
KEGG rclassRC00467
KEGG koko:K12946,ko:K19355
KEGG ReactionR01332
KEGG Pathwayko00051,ko03060,map00051,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005783,GO:0005787,GO:0005789,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016021,GO:0016485,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0030176,GO:0031224,GO:0031227,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042788,GO:0042886,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055044,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:1901564,GO:1902494,GO:1905368,GO:1990904
Exons3
Evalue6.08e-29
EggNOG OGsKOG4112@1|root,KOG4112@2759|Eukaryota
Ec32 ortholog descriptionProbable Spc1 homolog, Subunit of the Signal Peptidase Complex
Ec32 orthologEc-09_003190.1
EC3.2.1.78
Descriptionsignal peptide processing
Cds size330
COG categoryK
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790076.8607013-CDS-C-tenellus_contig8040:2567..26871680790076.8607013-CDS-C-tenellus_contig8040:2567..2687Choristocarpus tenellus KU2346CDSC-tenellus_contig8040 2568..2687 -
1680790076.8767428-CDS-C-tenellus_contig8040:3445..36551680790076.8767428-CDS-C-tenellus_contig8040:3445..3655Choristocarpus tenellus KU2346CDSC-tenellus_contig8040 3446..3655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790076.8878798-UTR-C-tenellus_contig8040:3655..41681680790076.8878798-UTR-C-tenellus_contig8040:3655..4168Choristocarpus tenellus KU2346UTRC-tenellus_contig8040 3656..4168 -
1680790076.9006197-UTR-C-tenellus_contig8040:5591..56871680790076.9006197-UTR-C-tenellus_contig8040:5591..5687Choristocarpus tenellus KU2346UTRC-tenellus_contig8040 5592..5687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8040.2.1prot_C-tenellus_contig8040.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8040 2568..3655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8040.2.1

>prot_C-tenellus_contig8040.2.1 ID=prot_C-tenellus_contig8040.2.1|Name=mRNA_C-tenellus_contig8040.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=110bp
MSRIVNLTLHKHYVFLPFLFSNSSHLPPPGLTHSSPDFALQAIGWVVGFI
YGDFKLTVMGWAAGVGISILLVVPDWPWFNQHPTKWLDSLPPRKGVKPVG
AAADAVKQD*
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mRNA from alignment at C-tenellus_contig8040:2568..5687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8040.2.1 ID=mRNA_C-tenellus_contig8040.2.1|Name=mRNA_C-tenellus_contig8040.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3120bp|location=Sequence derived from alignment at C-tenellus_contig8040:2568..5687- (Choristocarpus tenellus KU2346)
GACAAGGAGGGAGAGAAAGCGAAGGAAATACACGGAACGTACGCAATCCA
CACCTACAGTCGAAGACGTCACCCAGTGCCAGGGTTCTCAACCATGGTGA
GTTGTTTTCGGAGAGACGTCTTAGGATTACCAGTGTGCCTTCACTCAAGG
CCATCAAGGTGCTATTATCTGGACTTCCAAGCAATTATCTAGCGGACGTA
ATAGCTGAAGATAGTTTACGATGCATGTTATCCATAACTATATCCCGATT
TTGGCGCCCACTTGGCATGCGCAACTAAGTGATCCCTGTGCTTGAACTGT
CACCCACATCAAACGTGAGACCAAATTGGATTCCCTCTGCTGGAACACGA
TACCTCTCATTTCTTCCAGTAAGCTCTTTGCACTATCGTCAACCTCCCTA
ATTATATTCAGCACCTCCTTAACTCACTGGTAATGCTCCACCGCATTGCA
CCTCACCATGTAGTTATCCTGACCGTACAACTTTGCCTGAAAATTTGTGT
AGTTGCTCCTACCACTAATGGAGACCATTTGAGTGACGAACACTTTTCAA
CCCCCAGGAATCTACAATCTTCAGGAATTGAAAGTGTACCAGAATTGGCA
TCGTAACATCAACTTACCTTGCCATCCGACTTACACATCTTGGGATATTG
TCCTTGCCTGGCTGATAAATTGCCAACTTTTCACCAAAAAGTGTTAGTCT
TCCCCGTACTGCTGGGTGATGAATTCCTGGAAGTGATAGGCCATATTATT
CCTACATGTAGATAATTCTTCCCATGAAGAACTGGTCATATTTGTTGTTC
ACCTCCCCTCAGATACGTAGTAAGGACCAAGCGACTTATCATATATTATG
TCAACTCTCCCCCCCACCATTTGCAGTGCACACGGTGGTATGTAAACCTC
CTATCGATCGATTCATGACCTACCACCATGACAACCAGTGCATCACGTCT
TTTTTCCAAGTAGTACTGAAGACATACTGCATTATCCCTTCAAATGTGTC
CTCAGAGACCCACTGAGTTGAGAAGACAAGCACGTTGCTGTAATGCTCGC
CTAAATGTGAAGATCTGATGGCAACACAGCGATTACCAGTTGCCCGCTTT
CCAGGCACTGTATTTAAAATTATTGAAAAGGAGGCATGTCAATAGTCGAA
GTAGGTGACGCACACCAACCTTTCATAGACTTGACTATTTCTGGTGTACA
GCTGTACAACTGCGGGTACGGTCATGTTAGGGGGTAAGTTTCTTATGTTG
ATTTGAAGAGTGCCTGGTCCTTCTTCACAAACTCAGGCTTAGATAGCCCC
CCAGATATCCTTACAATACAAGGCGGGTACTCTCATGCTCTAGAACCTTT
TTCTCTACCGTACAGTTTGTTCATTGCAGTACCTGTCTCATGCTCACACC
CTTCCTTTGCAGGGTGATGTCTCTGTCACAATCTTGAATCATCACTGCTA
ATTATGTTATTCAAGACGATGTTCTTTCAACTCCTCCTGCCCCACCTACC
CAATTTGGGTGTTGTGCAGGACTTCAAGGGGCAGAAGCTAGCCGAGAACC
TGTACTTCTACATCATCATCATTTTGGGGGTGAGTCAGAGGTTTATAAGT
GAATTCTGTTGTGGTCTCAAGTTTTTTCACAGGTACAGCGAAGGACAGAG
GGCACATACTGTCTAGCTTTAGTTGAGAGCAGGAGCACTTTTCTCCACAC
AGCGAATATATTGGAGGAGGCATTTTTGTGAAAGTGAGAGGTCCACTTGA
GGCACAACTTTCCTCTAAATCAATTTCTAAGTGTACTGCAGTCTGATGCT
CTGTAGCCAAATATTCTGTCTATCCTTCTGCTCATGCTCTGCTGCTACTG
CATCTGTACTCATGGAATGGATTTCACATTTCTTCCTTTGATAGTATTTT
AGAAAGCTTGAGTACTAAACAAAATCGTAGTACTAAGCAACATAGTAGGT
CAACACGTTTCTTACCCTGTCTGTGTCAAGTAAGAGCTTTGCTCGGGTTG
TCTTGTGTATACATCTATTGCTCAAGTTATGGATGAGTAGAATTGTGAAC
CTGACTCTCCACAAGCATTATGTCTTTCTTCCATTTTTGTTTTCAAACTC
CTCTCACCTTCCTCCACCGGGTTTGACACATTCATCACCTGATTTTGCCT
TGCAGGCAATTGGGTGGGTGGTGGGATTTATCTACGGGGACTTCAAGCTC
ACTGTTATGGGCTGGGCTGCTGGGGTTGGTATTTCAATCTTGGTGAGTTT
GTTGTGTGTCTTGCTGGGGCAGGTATTCATAACTGCAATACCAATAGACC
ATAACACCCCCCTCCCCCCTTTTACCTCCATCCTATTCAAACGCCCTTCT
TGTCCATAGTTCCAGGCTACAACTGTTTAGTCCAAAGTGTATGTTGTATG
AAGAACCTCTTGTACGTGCTTGAGTGCTTAATTTTGTGAGAGCTTGGTAA
CTACACAGGTTTGTGTGGAGTGCAGTGCCACAGCAGCCTTGTCTTTCTTC
TATACCTTGTTCTGTCAACTGCATACACTTTTTTTGTGGCATTTGTAGTG
CAAATTTTGCGAAAGATTGGTGCTGGAAGCAATGTGTGGGTGGTGAGTGA
GATTGCAGCATACTTTTTAGCATGCAGTAGAAAAGTGTACCACAGGCAAT
ACAGTGATATTTCGTTCGAGTTAGATAAACCACCCAGTCTAATATTCTTC
TTGCAATAGGAGTAGGACTAACCCTATCACTGACCCTAACTAATTCAAAC
ATGAGATTCCTCTGGAGTGCTTCACTTGACTAAGTCTTTCTTGTACCTCT
TGACCCCCATGCCACATACCCTTCCTTTGCCTATACATGATTGAATTGAC
CACATGCTGCTCTAGAGAATGAAGCCCAGTATCTCCTCAACCATTGCCCT
TGGTGACCCCCGCACATGGACTTCACTCATCTCAACCCCATTGCCCAACT
CCCAGCCTGACCCCACCCAACCTCATTTCCTTCCACCCTATCAAAATCAG
CTTGTGGTGCCCGACTGGCCATGGTTTAACCAACACCCTACCAAATGGCT
CGATTCATTGCCACCAAGAAAAGGGGTTAAACCTGTGGGAGCAGCGGCAG
ATGCTGTAAAACAGGACTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8040:2568..5687-

>mRNA_C-tenellus_contig8040.2.1 ID=mRNA_C-tenellus_contig8040.2.1|Name=mRNA_C-tenellus_contig8040.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=330bp|location=Sequence derived from alignment at C-tenellus_contig8040:2568..5687- (Choristocarpus tenellus KU2346)
ATGAGTAGAATTGTGAACCTGACTCTCCACAAGCATTATGTCTTTCTTCC
ATTTTTGTTTTCAAACTCCTCTCACCTTCCTCCACCGGGTTTGACACATT
CATCACCTGATTTTGCCTTGCAGGCAATTGGGTGGGTGGTGGGATTTATC
TACGGGGACTTCAAGCTCACTGTTATGGGCTGGGCTGCTGGGGTTGGTAT
TTCAATCTTGCTTGTGGTGCCCGACTGGCCATGGTTTAACCAACACCCTA
CCAAATGGCTCGATTCATTGCCACCAAGAAAAGGGGTTAAACCTGTGGGA
GCAGCGGCAGATGCTGTAAAACAGGACTGA
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