mRNA_C-tenellus_contig798.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: D7FY88_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY88_ECTSI) HSP 1 Score: 153 bits (386), Expect = 1.440e-38 Identity = 87/214 (40.65%), Postives = 124/214 (57.94%), Query Frame = 3 Query: 147 GEKLSRLAQARSKLEAGSEDFFYRLGVWVATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDGNVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQAISQ 788 G K+S + ++ ++ FYRLG WVATH TL +S+V VI C GFANF VE+ G LW PADS + + I F G E F L + ++ G+VLTK + D +W + ++ +K D GNT+ D+C KE DGVTC QPF FW ++ Y+ +VS+DAD+L AVN T G+ + LFGN + +++ G++ A AI Q Sbjct: 20 GSKVSAWSIFHGRINKVADTLFYRLGYWVATHPKRTLLISLVFVIACCFGFANFRVEADGEDLWVPADSLTNDQRDIILGDFDGGGE--FASFLVESPSETGSVLTKESVDAVWELDAIVMAVKVD-GNTYADVCLKELDGVTCEQPFRGITRFWG-DFATYEASVSNDADVLAAVNATTFPDGSAVNQQALFGNGITYDDD-GNISGATAIIQ 228
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI) HSP 1 Score: 149 bits (376), Expect = 3.450e-37 Identity = 85/214 (39.72%), Postives = 122/214 (57.01%), Query Frame = 3 Query: 147 GEKLSRLAQARSKLEAGSEDFFYRLGVWVATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDGNVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQAISQ 788 G K S A+ ++ +++FFYRLG WVATH TL +S+V VI C GFANF +E+ G LW PADS +K ++ I F D E F ++ G+VLTK + D +W + ++ ++ GNT++D+C KE DGVTC PF FW ++ Y+ +V+SDADIL AVN T G+ LFGN + + + G++ A A Q Sbjct: 21 GSKGSAWARLHGRINEVADNFFYRLGYWVATHPKRTLLISLVFVIACCFGFANFRIEADGEDLWVPADSLAKDQQDIIIQDFDDDGEY----AAFLVESPSGSVLTKESVDAIWELDAIVMAVEA-GGNTYVDVCPKELDGVTCEPPFRGITRFWG-DFDTYEASVTSDADILAAVNVATFPDGSTVNQLALFGNGITY-DADGNISGASATMQ 227
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.150e-28 Identity = 73/202 (36.14%), Postives = 108/202 (53.47%), Query Frame = 3 Query: 183 KLEAGSEDFFYRLGVWVATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDGNVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQAISQ 788 ++ +++FFYRLG WVATH TL +S+VLVI C GFANF +E G+ + L + ++ G+VLTK + D +W + ++ ++ D GNT+ DLC KE DG TC F FW YT Y+ +V+SDADIL AVN T G+ + LFGN + +++ G++ A+A+ Q Sbjct: 33 RINEVADNFFYRLGYWVATHPKRTLLISLVLVIACCFGFANFRIEGDDGE---------------------------YATFLVESPSETGSVLTKESVDAVWELDAIVMAVEVD-GNTYADLCSKELDGATCEPVFRGITRFWGDFYT-YEASVTSDADILAAVNVTTFPDGSAVSEQALFGNGITYDDD-GNISGARAVIQ 204
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: A0A6H5L5K0_9PHAE (SSD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K0_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.130e-19 Identity = 69/214 (32.24%), Postives = 101/214 (47.20%), Query Frame = 3 Query: 147 GEKLSRLAQARSKLEAGSEDFFYRLGVWVATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDGNVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQAISQ 788 G K S ++ ++ +++FFYRLG WVATH TL +S+V VI C GFANF +E+ G LW PADS +K ++ I F D E + LL ++ GNVLTK + D +W + ++ ++ +V+SDADIL AVN T G+ LFGN + + + G++ A A Q Sbjct: 22 GSKGSAWSRLHGRVNEVADNFFYRLGYWVATHPKRTLLISLVFVIACCFGFANFRIEADGEDLWVPADSLAKDQQDIIVQDFDDDGE--YAALL--VESPSGNVLTKESVDAIWELDAIVMAVEA---------------------------------------SVTSDADILAAVNVATFPDGSTVNQLALFGNGITY-DADGNISGASATMQ 191
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 6.100e-9 Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 3 Query: 528 GNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQAISQ 788 G+T+ D+C KE DGVTC PF FW + Y+ +V+SDAD+L AVN + G + LFGN +V+++ G++ +AI Q Sbjct: 22 GHTYADVCAKELDGVTCAAPFRGVTRFWDG-FAAYEASVTSDADVLEAVNVEAFPDGFPVNQQTLFGNGIVYDDD-GNISGVKAIIQ 106
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: A0A812SI62_9DINO (NPC1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812SI62_9DINO) HSP 1 Score: 58.5 bits (140), Expect = 4.160e-6 Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 3 Query: 234 ATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDG-NVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQAI 782 A + + +AV++V +LC LG FT S LW S++ + + +F + +N V++ AKDG N+L E++ + + G TF D+C + S G C + +F + + TV S ADIL+AVN G A ++ G + + +G + SA A+ Sbjct: 30 ARNPWKCVAVTVVGCLLCALGVLRFTAVSEARDLWVDQGSQAMKDLEWTEQYFANPGRVNRVLVT----AKDGGNILRLETMAEIFRMADDAKALSDADGKTFADVCLRVSSG--CLNAGIR-RYFGTGTTADFNQTVQSQADILVAVNKANFPDGAPAFADDSMGG--IARDGSGSITSATAV 204
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: A0A812K6F7_9DINO (NPC1 protein n=2 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812K6F7_9DINO) HSP 1 Score: 56.6 bits (135), Expect = 1.840e-5 Identity = 44/183 (24.04%), Postives = 87/183 (47.54%), Query Frame = 3 Query: 234 ATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDG-NVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQA 779 A + + +++++V +LC +G F+ S LW DS++ + + +F + +N V++ AKDG ++L E++ + + + ++GN F ++C + G C P + +F + + TV + ADIL+AVN G A ++ G + + +G + SA A Sbjct: 136 ARNPWKCISLTVVGCLLCAVGVLRFSAASEARDLWVDQDSKAMKDMEWTEQYFANAGRLNRVLVT----AKDGGSILRMETMAEIFRLADDVKALTDENGNAFANVCLQVPSG--CLNPGIR-RYFGTGTSADFNQTVQTQADILLAVNKANFPDGAPAFADDSMGGLV--RDNSGSITSATA 309
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: A0A812ZZP1_9DINO (NPC1 protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812ZZP1_9DINO) HSP 1 Score: 55.8 bits (133), Expect = 3.330e-5 Identity = 49/183 (26.78%), Postives = 82/183 (44.81%), Query Frame = 3 Query: 234 ATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDG-NVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQA 779 A + + +AV++V +LC LG FT S LW S+ + + +F +N V++ AKDG N+L E++ + + + G +F D+C + S G C + +F + + TV S ADIL+AVN G A ++ G + + +G + SA A Sbjct: 616 ARNPWKCVAVTVVGCLLCALGVLRFTAVSEARDLWVDQGSQVMKDLEWTEKYFTTAGRVNRVLVT----AKDGGNILRPETMAEIFRMADDVKALSDADGKSFADVCLRVSSG--CLNAGIR-RYFGTGTSADFNQTVQSQADILVAVNKANFPDGAPAFADDSMGG--IARDGSGSITSATA 789
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: A0A1Q9D9Z4_SYMMI (Niemann-Pick C1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D9Z4_SYMMI) HSP 1 Score: 55.1 bits (131), Expect = 6.620e-5 Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 3 Query: 234 ATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDG-NVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQA 779 A + + +AV++V +LC LG FT S LW S+ + + +F +N V++ AKDG N+L E++ + + + G +F D+C + S G C + +F + + TV S ADIL+AVN G A ++ G + + +G + S+ A Sbjct: 125 ARNPWKCVAVTVVGCLLCALGVLRFTAVSEARDLWVDQGSQVMKDLEWTEKYFTSAGRVNRVLVT----AKDGGNILRPETMAEIFRMADDVKALSDADGKSFADVCLRVSSG--CLNAGIR-RYFGTGTSADFNQTVQSQADILVAVNKANFPDGAPAFADDSMGG--IARDGSGSITSSTA 298
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Match: A0A812TNP2_SYMMI (NPC1L1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNP2_SYMMI) HSP 1 Score: 54.7 bits (130), Expect = 8.270e-5 Identity = 48/183 (26.23%), Postives = 82/183 (44.81%), Query Frame = 3 Query: 234 ATHSFTTLAVSMVLVILCMLGFANFTVESAGGKLWTPADSRSKYEEKTIRSFFHDGVEINFVVLLFTTKAKDG-NVLTKAAFDELWITNNVLYDIKTDSGNTFLDLCEKESDGVTCRQPFLHPMHFWSSNYTLYQDTVSSDADILMAVNTDTSLHGNKAILEELFGNTMVFNETTGDLISAQA 779 A + + +AV++V +LC LG FT S LW S+ + + +F +N V++ AKDG N+L E++ + + + G +F D+C + S G C + +F + + TV S ADIL+AVN G A ++ G + + +G + S+ A Sbjct: 1017 ARNPWKCVAVTVVGCLLCALGVLRFTAVSEARDLWVDQGSQVMKDLEWTEKYFTTAGRVNRVLVT----AKDGGNILRPETMAEIFRMADDVKALSDADGKSFADVCLRVSSG--CLNAGIR-RYFGTGTSADFNQTVQSQADILVAVNKANFPDGAPAFADDSMGG--IARDGSGSITSSTA 1190 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig798.1.1 >prot_C-tenellus_contig798.1.1 ID=prot_C-tenellus_contig798.1.1|Name=mRNA_C-tenellus_contig798.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=223bp MEGGNHASAGEKLSRLAQARSKLEAGSEDFFYRLGVWVATHSFTTLAVSMback to top mRNA from alignment at C-tenellus_contig798:2661..10979- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig798.1.1 ID=mRNA_C-tenellus_contig798.1.1|Name=mRNA_C-tenellus_contig798.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=8319bp|location=Sequence derived from alignment at C-tenellus_contig798:2661..10979- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig798:2661..10979- >mRNA_C-tenellus_contig798.1.1 ID=mRNA_C-tenellus_contig798.1.1|Name=mRNA_C-tenellus_contig798.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=669bp|location=Sequence derived from alignment at C-tenellus_contig798:2661..10979- (Choristocarpus tenellus KU2346)back to top |