mRNA_C-tenellus_contig7977.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: D7G2N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N9_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.130e-17 Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 609 LLTLALRLATHEGKIVADQRG-------QFLCKLPLLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPILSRGKYVLLRVCNGLVSRLSKTHDASFCGQV 893 +L+LAL +E + G Q L LPLLLLED+++SQG +CKE W WVE NS L+ L+ G+Y L+R+CN L R+SKTHD+S CGQ+ Sbjct: 141 ILSLALAFVANEAGLDKSDGGGDSWSINQVLTALPLLLLEDFMESQGRTACKEFWSAWVEPNSERLSRLVPLNNGRYPLIRLCNKLAQRMSKTHDSSLCGQM 242
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A7S2W205_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W205_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.290e-10 Identity = 53/146 (36.30%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 510 AQEVEVAFRTRMHDLVTKMNKEELSLEISGVPNLLTLALRLATHEGKIVADQRGQFLC-------KLPLLLLEDYLDSQGTE----------SCKEMWGTWVEGNSAELTAEPILS-RGKYVLLRVCNGLVSRLSKTHDASFCGQV 893 A E+E FR+++ +++ GV LL +++ A EGK A + G L KLP LL ED +++ E S + +W T +E LT P L +GK VLLR+CNGLV RLSKTHD +CG+V Sbjct: 58 ASELEFIFRSKLAEIIKTHG--------DGVERLLRVSVDYAMMEGK-AASEAGATLASALPTTGKLPFLLFEDLMETSVLETSQDDPATSWSARRVW-TLLEEYREPLTETPALFLKGKLVLLRLCNGLVRRLSKTHDTEWCGRV 193
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A067CNZ3_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CNZ3_SAPPC) HSP 1 Score: 68.9 bits (167), Expect = 3.890e-9 Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 3 Query: 570 KEELSLEISGVPNLLTLALRLATHEGKIVADQRGQFLCKLPLLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPILSRGK-----YVLLRVCNGLVSRLSKTHDASFCGQV 893 K + +LE G+P LL L AT RG + P +LED +D Q C+++WG +E + LT + GK LLR+CN L+ RLSKTH+ FCG++ Sbjct: 76 KRDATLESVGIPALLDLCTDGAT---------RGYLMLNAPYKILEDLVDCQTIVVCEQLWGL-LESRRSRLTTTDFIQAGKNSKASLCLLRMCNALLRRLSKTHNTVFCGRI 178
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A7S3MH41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MH41_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.860e-8 Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 3 Query: 516 EVEVAFRTRMHDLVTKMNKEELSLEISGVPNLLTLALRLATHEGKIVADQRGQFLCKLPLLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPILSRGKYVLLRVCNGLVSRLSKTHDASFCGQV 893 ++E++ R + D + K + E+ E S V LL A R A H I Q + K+P ++ED ++SQ E + +W +E +T I +GK +LR CN L+ +LSK+ + FCG+V Sbjct: 46 DMEISIRGLLSDHL-KSSASEVISESSEVVKLLKFAFRFAVHFHDI------QNVAKVPFSMIEDIMESQTIEKAEALWQI-IESLVEVITQPDIFPKGKLTILRTCNSLLRKLSKSCNTEFCGRV 163
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A484EG24_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EG24_BRELC) HSP 1 Score: 63.5 bits (153), Expect = 2.290e-7 Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 3 Query: 519 VEVAFRTRMHDLVTKMNKEELSLEIS-GVPNLLTLALRLATHEGKIVADQRGQFLCKLPLLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEP--ILSRGKYV-----LLRVCNGLVSRLSKTHDASFCGQV 893 +E+A + + L K+ E + S GVP LL L + T G + P +LED ++ Q +C+++W +E +LTA+P I +G+ LLR+CN L+ RLSKTHD+ FCG++ Sbjct: 54 LEMAVQKVVEKLSWKLMTEARATASSVGVPALLDLCIAGVTS---------GYLINSTPYKVLEDLMEGQTISTCEKVWDL-LEARKVKLTAKPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHDSVFCGKI 176
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A1V9ZSV5_9STRA (THO complex subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZSV5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.230e-7 Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 3 Query: 570 KEELSLEISGVPNLLTLALRLATHEGKIVADQRGQFLCKLPLLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPILSRGK-----YVLLRVCNGLVSRLSKTHDASFCGQV 893 K + ++E G+P LL L + EG ++ + P +LED +D Q C+++WG +E LT + GK LLR+CN L+ RLSKTH+ FCG++ Sbjct: 72 KPKATIESVGIPTLLDLCI-----EGA----KKQYLMLNAPYKILEDLMDCQTIVVCEKLWGL-LESRRNSLTNSDFIQAGKTNKASLSLLRMCNALLRRLSKTHNTVFCGRI 174
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A2K1L077_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L077_PHYPA) HSP 1 Score: 62.4 bits (150), Expect = 5.680e-7 Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 3 Query: 699 LLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPILSRGKYVLLRVCNGLVSRLSKTHDASFCGQV 893 LLED + + CKE++G ++EG L + SRGK V+LR CN L+ RLSKT+D FCG++ Sbjct: 123 LLEDLTEVSTIKDCKEVFG-YIEGKQETLGKSELFSRGKLVMLRTCNQLLRRLSKTNDVVFCGRI 186
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: T2M853_HYDVU (THO complex subunit 1 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2M853_HYDVU) HSP 1 Score: 62.0 bits (149), Expect = 7.000e-7 Identity = 48/164 (29.27%), Postives = 80/164 (48.78%), Query Frame = 3 Query: 417 EPVTNAVAKGKGVDKDSRLKAQAVPLVAEGGAQEVEVAFRTRMHDLVTKMN---KEELSLEISGVPNLLTLALRLATHEGKIVADQRGQFLCK-LPLLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPILSRGKYVLLRVCNGLVSRLSKTHDASFCGQVK 896 E ++ +K +GV+ D RL V G ++ + + H + N ++E+ IS LL ++ + QF K LP+LLL D D+ C++M+ ++E N + AEP S GK LLR+CN ++ RLSK+ + FCG+++ Sbjct: 33 EAISKLFSKYEGVENDCRLATDQAFRVTLG-----KILYPSNNHLHHSDKNDISEKEMDKCISQYEELLDY----------VIIHAKEQFCTKNLPILLLSDIFDTMTLCDCEKMF-KYIEKNVSVWNAEPFFSTGKNHLLRMCNDMLRRLSKSQNTVFCGRIQ 180
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A024GB19_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024GB19_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 7.520e-7 Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 3 Query: 486 VPLVAEGGAQEVEVAFRTRMHDLVTKMNKEELSLEISGVPNLLTLALRLATHEGKIVADQRGQFLCKLPLLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPIL------SRGKYVLLRVCNGLVSRLSKTHDASFCGQV 893 VP + E ++A + + K+ L+ +G+ LL L + A VA+ QF P +LED ++SQ ++C+ +W +E A LTA P ++ LLR+CN L+ RLSKTH+ FCG++ Sbjct: 46 VPKLIESTQNIFDIAVQRIVATFSWKLVSGSSKLDTAGITALLDLCIDGA------VANILFQFA---PYKVLEDVMESQPIQTCEALWDI-LEVRKARLTASPFFDSSGRTTKSSLTLLRMCNALLRRLSKTHNTVFCGRI 177
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Match: A0A419Q6V8_CLOSI (THO complex subunit 1 (Fragment) n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=A0A419Q6V8_CLOSI) HSP 1 Score: 61.6 bits (148), Expect = 1.230e-6 Identity = 42/146 (28.77%), Postives = 75/146 (51.37%), Query Frame = 3 Query: 465 SRLKAQAVPLVAEGGAQEVEVAFRTRMHDLVTKMNKEELSLEISGVPNLLTLALRLATHEGKIVADQRGQFLCKLP--LLLLEDYLDSQGTESCKEMWGTWVEGNSAELTAEPILSRGKYVLLRVCNGLVSRLSKTHDASFCGQVK 896 S+LK +A + + ++VAFR+RM +L++ + +E V +LL + + A +C P LL D +++ C+E++G ++E L P+ + G+ LLR+CN L+ RLSK+ + FCGQ++ Sbjct: 49 SKLKTEAETIQLKDTKPVIDVAFRSRMLELLSSHSLDE-------VKSLLKVGVAAALAN-----------ICSAPTPFLLFSDVFNTKPISVCQELFG-FMEETITTLKDVPLFASGRNTLLRMCNDLLRRLSKSQNTVFCGQIQ 175 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7977.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7977.2.1 >prot_C-tenellus_contig7977.2.1 ID=prot_C-tenellus_contig7977.2.1|Name=mRNA_C-tenellus_contig7977.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=249bp MVVAAHPLDTRLQTLLDAVNAPPSSGSLDLLLEALRPLRIILPPKEPVTNback to top mRNA from alignment at C-tenellus_contig7977:3384..6185+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7977.2.1 ID=mRNA_C-tenellus_contig7977.2.1|Name=mRNA_C-tenellus_contig7977.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2802bp|location=Sequence derived from alignment at C-tenellus_contig7977:3384..6185+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7977:3384..6185+ >mRNA_C-tenellus_contig7977.2.1 ID=mRNA_C-tenellus_contig7977.2.1|Name=mRNA_C-tenellus_contig7977.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=747bp|location=Sequence derived from alignment at C-tenellus_contig7977:3384..6185+ (Choristocarpus tenellus KU2346)back to top |