mRNA_C-tenellus_contig7973.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7973.1.1
Unique NamemRNA_C-tenellus_contig7973.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7973.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7973contigC-tenellus_contig7973:343..3968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2037
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_010370.1
Cds size1803
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.9813926-CDS-C-tenellus_contig7973:342..14861680790072.9813926-CDS-C-tenellus_contig7973:342..1486Choristocarpus tenellus KU2346CDSC-tenellus_contig7973 343..1486 -
1680790072.9972923-CDS-C-tenellus_contig7973:2060..26231680790072.9972923-CDS-C-tenellus_contig7973:2060..2623Choristocarpus tenellus KU2346CDSC-tenellus_contig7973 2061..2623 -
1680790073.0080879-CDS-C-tenellus_contig7973:3638..37341680790073.0080879-CDS-C-tenellus_contig7973:3638..3734Choristocarpus tenellus KU2346CDSC-tenellus_contig7973 3639..3734 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790073.0213327-UTR-C-tenellus_contig7973:3734..39681680790073.0213327-UTR-C-tenellus_contig7973:3734..3968Choristocarpus tenellus KU2346UTRC-tenellus_contig7973 3735..3968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7973.1.1prot_C-tenellus_contig7973.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7973 343..3734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7973.1.1

>prot_C-tenellus_contig7973.1.1 ID=prot_C-tenellus_contig7973.1.1|Name=mRNA_C-tenellus_contig7973.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=601bp
MQDVRQRMGALGLGGISVTEVEEVDRMLGGMKCGPDDLEEAGHQLNSMRL
GVDPPGRGGVPGSHPRTFSYNQPPEPRRRYGQIPMAPAMSPRATPIFVNA
PGATSAQASSGETRGRGWSWSGAAATAGVAAATVGSAGGGGGVKIGGVQC
PTAMEPHLVSAMRIFSSMAGGSGRVPASQFRELLTRLVPAAQRVQEAEAS
ARATNLLGAYSFSREEFISWYLKWVNEQNYSDHRNGSNHAPDKGLRLDPN
AIPSPSAPALSPNFGALPARRTRAQTFNANDHYDMPGVGLNHASPRARHE
GVRRVAGGAARPFSWADVRARAGVDSGVGVEASSPRSGLQTVQAQAAAAA
VAAAMSTASGIGSGSGWWGSGENSRSPRYANYSGVKGDWGGRGTPTSTAN
IPSANGIGGVSNGGVTSMSNGYSKPTPKQEGVDGVGNGAPCMDPESGAAH
VDTGVDGGLNKWNPLSSWFGTGTETGVRANIEESSPRANIRPRADVAGVA
LGGKGAGKPVELQTGHQLPTFSTGVKGQGHQPSRSPDSTHMPMRAGQAVQ
GSRTPSPQVGGEGGTRRGNGRQSSTTAGVQDHQVRDGTGGRARVRSGSGG
G
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mRNA from alignment at C-tenellus_contig7973:343..3968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7973.1.1 ID=mRNA_C-tenellus_contig7973.1.1|Name=mRNA_C-tenellus_contig7973.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3626bp|location=Sequence derived from alignment at C-tenellus_contig7973:343..3968- (Choristocarpus tenellus KU2346)
AAAATTTTAGGGGTAGGTGTTACAATGGAACCAAGACACATCACAGAAAA
AAGGTCCAAGTGAAGCTGCCATCGTGTTGTCACTGGTTTGGAAGGTCGTA
TCCCATGGGGGGTAGACACAGCATGAAATGAATCAATCGATAGTAATCTT
GCATTTTGAATCATTTTGTTGGGGTTTGACCACAAGTCTGTGTCGTCAAT
AGAGACTGGAGAGGTCAAGAGTCTCCCAAGCAGTATGCAGGATGTTAGGC
AACGGATGGGTGCATTGGGACTGGGGGGTATTTCCGTTACTGAGGTGGAA
GAGGTCGACCGCATGCTTGGAGGGATGAAGGTGAGGCCAAAGGCTGAGTC
GTCGTTTTTGTTGTGTCTACAAGTGACCGTTCACATTTAATCTATGATTT
TTCGAGATAAGTTATGGAGGTGATTGAGGCCATACAGGCCATTTAATCTC
CTTAAACCTACAAATTAGTAGTGTAATGGTGGCAATGATATGTTGTCGGT
GTGCATGGTGCAGCGATTCCTTTGTAGACAAGACCACTGAATAGTGTTGT
CAAGTGTCGGGGGAGATTGAAGGAGAGGTGGATGCGTTGCATTCCTTCTT
CCATCATCAACCACACCCTTCCTTTCTCCAAACCCCGTAGCTAGATTGCC
CTCCAAAGGTAAATTGCATAAAACCTTTGAAAATTGTTACTCCTATCTAC
AGATTAGCTCAGCAAGGAAGTACGTACACCTTGGCGCCCACCGCCAACCA
CGAACGTCTATGAACTTCGATTGTACGAGTTCACCTATCTTTTAAACGAC
ATTACAATTTGTCTGCTCTACAGCGTTTACGACTCTGCTATAGAACTATA
TCCAGAGAATTAGAACATATCATGGACACGGTAGCTGAAAACCATGAGGA
TGGAGAGATCTATCAAATTCGGAGTTTCGGGGTTTGGCTTCAGGATTAGC
TCCCAACAGATATATAGGATTCACGAGCTCGTGGTGTGGGGATTGAAAGT
ACAGCCCCAAGTGCAGCCTACGCATATGTGCTGAAGCATTGACCCCGTAA
TGATCTAATTTTGTACTGATACGGATACTGCGAGACAACCTGGGCTATCT
CCGTCCAGGACTCGATACCAGGTCATTTTAATCCTCTTTTATTTGTCGAA
TTTGGGATGGGGTTCGGCTAGGTGTGCGGAGTATCGCCTGGATTCTGGGG
AGTATTGTACTTCAGAACTGGGTGGCTTGACAAAATAGTTCAATTCTCAC
ATATATTTCTCTGGTACCACGTACCCCCACCGTCCCTCCTTCTCACCATG
TTCCTTCCTGTGTATTCCCTCTTCCCCTTGAAACGTTTATTGCAGTGTGG
TCCAGATGACCTGGAAGAAGCAGGGCATCAACTGAACTCCATGCGACTTG
GTGTTGACCCCCCAGGGAGGGGGGGAGTGCCTGGTAGCCACCCTCGAACC
TTTTCGTACAATCAGCCTCCCGAACCAAGGAGGCGATATGGGCAGATTCC
AATGGCTCCTGCAATGAGCCCTCGAGCGACACCCATATTTGTGAATGCTC
CGGGGGCAACATCTGCACAGGCGAGTAGTGGCGAAACAAGGGGAAGGGGC
TGGAGTTGGAGTGGGGCTGCAGCCACAGCAGGGGTTGCAGCAGCGACTGT
TGGATCTGCTGGGGGTGGGGGTGGGGTAAAGATTGGGGGAGTGCAATGCC
CCACGGCTATGGAGCCCCATCTCGTGTCAGCAATGCGCATTTTCTCAAGC
ATGGCTGGTGGATCCGGGCGGGTGCCAGCTTCACAGTTCCGAGAACTATT
GACGCGACTGGTCCCAGCTGCACAGCGCGTGCAAGAGGCTGAAGCATCGG
CTCGCGCAACAAACCTATTGGGGGCCTACTCTTTCTCACGGGAGGAGTTT
ATTTCCTGGTGAGGGAGATTTTTTTTTAGGAGGGTAATTTTGTCGCAAGC
AATATGGCGAGGTCCTGGGCACTGGGCATGAAAGTGCACAGTTGTGCTGG
GTTGTAGGTAGAGATATGGTTTGGTGTTCAAATTTGCGGGGGCAGGCATG
TTGGAGTTTTTTTTTTTGTATCTTATCTGAGATGGAAACTAGATACGGAT
AGAATGCAAAGGATGAGAGACGATACGGTTTTTGTTTTTGTTTTTGCCTT
GGCTAATTGTAGTGGGTTCATGGGGTAAGTACAGGAAGAGATTGGGATAT
TTGGTTCTGGTGAGGGGGGTACTACAGTCAAGGATGTAAATCTGAACCCC
TCTCCACTCTGTCCTACTTTGCACATGGATGACTGAAGAGCACTGTTGTT
TGGGACTTGCAGATGGAAATAACCATGTCGCTTGAAGCGCTTCTTACAAA
ATTCTACACCATATCCTTTTGCTATCATAATAATTTGTGGATTGTTTTTT
GTCTAATGCTTGTTTTCCCCCTATGATCCTGTCTGATTCCACTCCATCCT
CTGCCTCACAACCCTTCATTGTGCCCTTCCAGGTACCTGAAGTGGGTGAA
TGAACAAAACTACTCTGACCACAGAAATGGCAGTAACCATGCTCCAGACA
AAGGGCTCAGGCTAGATCCAAACGCCATCCCCTCCCCCAGTGCCCCTGCC
CTTTCCCCGAACTTTGGTGCCCTTCCTGCCCGGCGAACACGAGCACAGAC
CTTCAATGCAAACGACCATTATGATATGCCAGGGGTTGGGCTGAACCATG
CTAGTCCCAGAGCCAGGCATGAAGGGGTGCGGAGGGTCGCAGGGGGTGCA
GCAAGGCCGTTTTCATGGGCAGATGTTAGGGCTAGGGCTGGTGTTGATTC
TGGTGTGGGAGTGGAGGCCTCGTCGCCAAGGTCAGGTTTGCAGACGGTGC
AGGCACAGGCGGCTGCGGCAGCTGTGGCAGCTGCGATGTCAACAGCCAGT
GGGATTGGCAGTGGGTCAGGATGGTGGGGGAGTGGGGAGAACTCACGCTC
GCCAAGGTATGCCAATTATAGTGGTGTGAAGGGTGATTGGGGGGGCAGGG
GAACACCCACTTCTACGGCCAACATACCAAGTGCCAATGGCATAGGTGGT
GTGAGTAATGGAGGAGTGACCTCAATGAGTAATGGATATTCAAAACCTAC
TCCAAAGCAAGAGGGTGTGGATGGAGTGGGGAATGGGGCGCCATGCATGG
ACCCTGAGTCAGGGGCAGCCCACGTTGATACTGGTGTTGACGGAGGTCTG
AACAAGTGGAATCCCTTGTCCTCCTGGTTTGGGACTGGAACTGAGACTGG
TGTCAGGGCCAACATAGAGGAGTCTAGCCCTAGAGCCAATATTCGGCCGA
GGGCAGATGTTGCAGGTGTTGCCTTGGGAGGGAAAGGAGCAGGGAAGCCT
GTCGAGTTGCAAACAGGTCATCAGTTGCCAACCTTTTCCACAGGGGTCAA
GGGGCAGGGACATCAGCCTTCGAGGTCGCCTGACTCTACACACATGCCAA
TGCGTGCGGGCCAAGCTGTGCAAGGCTCAAGGACGCCTTCTCCTCAAGTA
GGGGGGGAAGGAGGGACCCGAAGGGGAAATGGTCGACAAAGCTCTACCAC
TGCTGGTGTTCAAGATCATCAGGTGCGAGATGGGACTGGGGGAAGGGCGA
GGGTGAGAAGTGGGAGCGGCGGTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7973:343..3968-

>mRNA_C-tenellus_contig7973.1.1 ID=mRNA_C-tenellus_contig7973.1.1|Name=mRNA_C-tenellus_contig7973.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1803bp|location=Sequence derived from alignment at C-tenellus_contig7973:343..3968- (Choristocarpus tenellus KU2346)
ATGCAGGATGTTAGGCAACGGATGGGTGCATTGGGACTGGGGGGTATTTC
CGTTACTGAGGTGGAAGAGGTCGACCGCATGCTTGGAGGGATGAAGTGTG
GTCCAGATGACCTGGAAGAAGCAGGGCATCAACTGAACTCCATGCGACTT
GGTGTTGACCCCCCAGGGAGGGGGGGAGTGCCTGGTAGCCACCCTCGAAC
CTTTTCGTACAATCAGCCTCCCGAACCAAGGAGGCGATATGGGCAGATTC
CAATGGCTCCTGCAATGAGCCCTCGAGCGACACCCATATTTGTGAATGCT
CCGGGGGCAACATCTGCACAGGCGAGTAGTGGCGAAACAAGGGGAAGGGG
CTGGAGTTGGAGTGGGGCTGCAGCCACAGCAGGGGTTGCAGCAGCGACTG
TTGGATCTGCTGGGGGTGGGGGTGGGGTAAAGATTGGGGGAGTGCAATGC
CCCACGGCTATGGAGCCCCATCTCGTGTCAGCAATGCGCATTTTCTCAAG
CATGGCTGGTGGATCCGGGCGGGTGCCAGCTTCACAGTTCCGAGAACTAT
TGACGCGACTGGTCCCAGCTGCACAGCGCGTGCAAGAGGCTGAAGCATCG
GCTCGCGCAACAAACCTATTGGGGGCCTACTCTTTCTCACGGGAGGAGTT
TATTTCCTGGTACCTGAAGTGGGTGAATGAACAAAACTACTCTGACCACA
GAAATGGCAGTAACCATGCTCCAGACAAAGGGCTCAGGCTAGATCCAAAC
GCCATCCCCTCCCCCAGTGCCCCTGCCCTTTCCCCGAACTTTGGTGCCCT
TCCTGCCCGGCGAACACGAGCACAGACCTTCAATGCAAACGACCATTATG
ATATGCCAGGGGTTGGGCTGAACCATGCTAGTCCCAGAGCCAGGCATGAA
GGGGTGCGGAGGGTCGCAGGGGGTGCAGCAAGGCCGTTTTCATGGGCAGA
TGTTAGGGCTAGGGCTGGTGTTGATTCTGGTGTGGGAGTGGAGGCCTCGT
CGCCAAGGTCAGGTTTGCAGACGGTGCAGGCACAGGCGGCTGCGGCAGCT
GTGGCAGCTGCGATGTCAACAGCCAGTGGGATTGGCAGTGGGTCAGGATG
GTGGGGGAGTGGGGAGAACTCACGCTCGCCAAGGTATGCCAATTATAGTG
GTGTGAAGGGTGATTGGGGGGGCAGGGGAACACCCACTTCTACGGCCAAC
ATACCAAGTGCCAATGGCATAGGTGGTGTGAGTAATGGAGGAGTGACCTC
AATGAGTAATGGATATTCAAAACCTACTCCAAAGCAAGAGGGTGTGGATG
GAGTGGGGAATGGGGCGCCATGCATGGACCCTGAGTCAGGGGCAGCCCAC
GTTGATACTGGTGTTGACGGAGGTCTGAACAAGTGGAATCCCTTGTCCTC
CTGGTTTGGGACTGGAACTGAGACTGGTGTCAGGGCCAACATAGAGGAGT
CTAGCCCTAGAGCCAATATTCGGCCGAGGGCAGATGTTGCAGGTGTTGCC
TTGGGAGGGAAAGGAGCAGGGAAGCCTGTCGAGTTGCAAACAGGTCATCA
GTTGCCAACCTTTTCCACAGGGGTCAAGGGGCAGGGACATCAGCCTTCGA
GGTCGCCTGACTCTACACACATGCCAATGCGTGCGGGCCAAGCTGTGCAA
GGCTCAAGGACGCCTTCTCCTCAAGTAGGGGGGGAAGGAGGGACCCGAAG
GGGAAATGGTCGACAAAGCTCTACCACTGCTGGTGTTCAAGATCATCAGG
TGCGAGATGGGACTGGGGGAAGGGCGAGGGTGAGAAGTGGGAGCGGCGGT
GGG
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