mRNA_C-tenellus_contig7970.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: D7FLN1_ECTSI (Asparagine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN1_ECTSI) HSP 1 Score: 168 bits (425), Expect = 3.460e-45 Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = 1 Query: 1 MLRRFAGVDLAVRTGVSQGDLEREAPAAKSLLLKITRPGGVPDV----FLTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVEAIALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLATVAEPLLKGASGAAAAASTGGVRLLSSKDIEGLAHVM 534 ++ R AG+DL ++TG+S+ ++E AP AK L+LK+ RPG V +TQSNA+LR +A + S LYGR+EFESA DQWLETCW E EVP +A+A A+GN AVI E+K HLL+FLA AN L+ T+L ER TIAD+ LA A L++G+ GG L ++D+ GL HV+ Sbjct: 37 VVARMAGIDLDLKTGMSEEEMEAFAPLAKGLVLKVCRPGQAAPVGGEEAVTQSNAILRTLAMAKADSSLYGRSEFESAQADQWLETCWKELEVPAQALAAASGNQAVIAEAKRHLLSFLATANATLSTSTFLVGERTTIADVGLACAARDLIEGSV-------AGGAASLGARDLAGLPHVL 211
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: A0A835YW11_9STRA (Asparagine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW11_9STRA) HSP 1 Score: 122 bits (306), Expect = 5.100e-29 Identity = 74/173 (42.77%), Postives = 103/173 (59.54%), Query Frame = 1 Query: 10 RFAGVDLAVRTGVSQGDLEREAPAAKSLLLKITRPGGVPDVFLTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVEAIALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLATVAEPLLKGASGAAAAASTGGVRLLSSKDIEGLAH 528 R AG+ +A++T ++ + +APAAK+L L+ITRP ++TQSNA++R + TS LYG TEF + VD WLE CW E E P+ + A G+ VI E+K +L L N LA +TYL R+T ADI+LA A+P+L GAAA+ +LS KD+ L H Sbjct: 39 RAAGIPVALKTCSAEA-IGEQAPAAKALALRITRPTSAHPSYITQSNAIVRTLIDASETSGLYGDTEFARSQVDSWLELCWLELETPLAVLQQAKGHGDVIAEAKKLILHALTAVNAALAARTYLVGNRLTAADIALACAAQPIL----GAAAS-------VLSGKDLATLPH 199
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: A0A7S2UT83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT83_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.940e-18 Identity = 57/145 (39.31%), Postives = 81/145 (55.86%), Query Frame = 1 Query: 10 RFAGVDLAVRTGVSQGDLEREAPAAKSLLL--KITRPGGVPDVFLTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVE-----AIALAAGNSAVITESKHHLLAFLA-IANTRLAQKTYLGAERITIADISL 420 + +GV LA + GV Q L P AK+++L + T+ +TQSNA+LR IA L P + LYGR +F+SA VDQWLE W+E EVP A L + A +K LL L + LA++T+L +R ++AD+ L Sbjct: 27 KLSGVKLAHQPGVQQSVLTSFLPHAKTVVLHDETTKRS------ITQSNAILRMIAQLNPAAELYGRDDFQSAQVDQWLEFAWNEVEVPAAVCLFPARGLLEKDDAAAAMAKQDLLTSLGHVLENHLAERTFLVGQRPSLADVGL 165
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: F0YK49_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK49_AURAN) HSP 1 Score: 80.1 bits (196), Expect = 2.170e-14 Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 1 Query: 13 FAGVDLAVRTGVSQGDLEREAPAAKSLLLKITRPGGVPDVFLTQ-----SNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVEA-----IALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISL 420 + GVD+ V D + E A L ++ G VP + Q SNA+ RY+A LR S +YGRT +ESAL+D W++ C HE E+P I N+A ++K H+ L L KTY+ + IT+ADI+L Sbjct: 23 YVGVDIDVP------DFDMEKTAKTPSFLAMSPMGKVPVLKTPQGAIFESNAIARYVARLRKDSEIYGRTFYESALIDSWVDFCAHELELPCTMWVYPIIGYMPFNAAASAKAKEHVTDALDSLERHLVDKTYIVGDAITLADITL 162
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: A0A8J2WRT9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WRT9_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.580e-13 Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 1 Query: 13 FAGVDLAVRTGVSQGDLEREAPAAKSLLLKITRPGGVPDVFLTQ-----SNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVEA-----IALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLAT 426 +AGV++AV+ D++ +A A K++ G VP + Q SNA+ RY+A LR + LYGRT +ESA+VD W++ C HE E+P I + ++K H+ L + L KTY+ E +T+ADI++A+ Sbjct: 23 YAGVEIAVK------DVDAKAAA------KLSPTGKVPVLETPQGTIFESNAIARYVARLRSDADLYGRTFYESAVVDSWIDFCAHELELPCTLWVYPIIGYMPFSGPAYGKAKAHVSQALKTLDAHLLDKTYMVGEAMTLADITIAS 158
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: A0A7S0SSV9_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSV9_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.830e-13 Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 136 LTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVEAI-----ALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLAT 426 +T+SNA+ RYIA LRP LYG+T ++SA++D W++ H+ E+P + A N + ++K+ L + N L +KTYL E I++ADI++AT Sbjct: 75 ITESNAIARYIARLRPDIGLYGKTFYDSAVIDSWIDYNSHDIELPATLLLYPILGYTAYNEVIANKAKNDLTKVFQLLNNYLKEKTYLVGESISLADITIAT 176
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: A0A7S2SN27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN27_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 4.360e-13 Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1 Query: 133 FLTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVEAIALAA----GNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLATVAEPLL 444 +LTQ+ A+ RY+A LRP L G +E + VDQW+E CW+E EV + A+ L + AV ++ L + + LA KT++ R++IAD+ LA V LL Sbjct: 87 YLTQTKAIARYLAGLRPDLGLAGASEADEPFVDQWMEFCWYELEVLLGALLLPSTAEFDPKAVAQAVSTDIIKALQVLDAHLADKTFVAGSRLSIADVHLAVVTSELL 194
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: D7G6C4_ECTSI (Eukaryotic elongation factor-1 B gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6C4_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.090e-11 Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 124 PDVFLTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVE-----AIALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLAT 426 P + +SNA+ RY+A +R + LYG + FESA VD W++ C HE E+P I N A ++++K L L L +TYL ++IT+ADI++A+ Sbjct: 59 PQGSIFESNAIARYVARMRRDTELYGVSFFESAQVDSWIDFCAHEIELPATIWCYPVIGYMPYNDAAVSKAKEDLKIALGALEKALLHRTYLVGDKITLADITVAS 164
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: W7TL25_9STRA (Elongation factor 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL25_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.120e-11 Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 22 VDLAVRTGVSQGDLEREAPAAKSLLLKITRPGGVPDVFLTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVE-----AIALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLAT 426 +DLA + + D+ ++PA K +L+ P L +SNA+ RYIA R + LYG + F+S LVD W++ E E+P N+AV ++K L A + I + LA KTYL E++T+ADI++A+ Sbjct: 33 LDLAAK---KRTDVLAKSPAGKVPVLE------TPQGLLFESNAIARYIARARRDTDLYGVSFFDSGLVDAWIDFAAQEVELPATLWVYPVFGYLPHNAAVTEKAKADLGAAMEILDNHLADKTYLVGEKVTLADITVAS 163
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Match: A0A2C6KYN3_9APIC (Elongation factor 1-gamma n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KYN3_9APIC) HSP 1 Score: 71.2 bits (173), Expect = 2.930e-11 Identity = 47/120 (39.17%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 70 EAPAAKSLLLKITRPGGVPDVFLTQSNAVLRYIATLRPTSLLYGRTEFESALVDQWLETCWHEFEVPVEAIALAAGNSAVITESKHHLLAFLAIANTRLAQKTYLGAERITIADISLATV 429 ++P + LL+ GGV L +SNA+ R++A LRP LYG T E VD WL+ E E+P+ L G V +K + L + NT L TY+ ERITIAD+ LAT+ Sbjct: 90 KSPLGRLPLLESELGGGV---CLFESNAICRFLARLRPDKYLYGETLGEQGYVDMWLDFTTLEVEIPM--CCLVQGGK-VAERAKSDVSRALNVINTHLKTNTYMVGERITIADLCLATI 203 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7970.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7970.1.1 >prot_C-tenellus_contig7970.1.1 ID=prot_C-tenellus_contig7970.1.1|Name=mRNA_C-tenellus_contig7970.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=178bp MLRRFAGVDLAVRTGVSQGDLEREAPAAKSLLLKITRPGGVPDVFLTQSNback to top mRNA from alignment at C-tenellus_contig7970:3..1180- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7970.1.1 ID=mRNA_C-tenellus_contig7970.1.1|Name=mRNA_C-tenellus_contig7970.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1178bp|location=Sequence derived from alignment at C-tenellus_contig7970:3..1180- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7970:3..1180- >mRNA_C-tenellus_contig7970.1.1 ID=mRNA_C-tenellus_contig7970.1.1|Name=mRNA_C-tenellus_contig7970.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=534bp|location=Sequence derived from alignment at C-tenellus_contig7970:3..1180- (Choristocarpus tenellus KU2346)back to top |