mRNA_C-tenellus_contig797.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig797.2.1
Unique NamemRNA_C-tenellus_contig797.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig797.2.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.530e-7
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:  377 SGRVLSHGWAYLCADGAVFAWEQGMVASGGSGTGPS----CLCFDHPSMAGELAAVRAL 541
            +GRVLSHGWA++C D  V AWEQGMVA+   G        CL F+HP+M  ELA +  L
Sbjct:   20 TGRVLSHGWAFMCTDTGVLAWEQGMVAAERPGAAVRADQVCLRFEHPAMMHELALMAPL 78
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig797.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHH9_9PHAE1.530e-752.54Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig797contigC-tenellus_contig797:3071..5221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size587
Hectar predicted targeting categoryother localisation
Exons4
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.603966-CDS-C-tenellus_contig797:3070..31111680790072.603966-CDS-C-tenellus_contig797:3070..3111Choristocarpus tenellus KU2346CDSC-tenellus_contig797 3071..3111 -
1680790072.6135728-CDS-C-tenellus_contig797:3906..40521680790072.6135728-CDS-C-tenellus_contig797:3906..4052Choristocarpus tenellus KU2346CDSC-tenellus_contig797 3907..4052 -
1680790072.6246772-CDS-C-tenellus_contig797:4413..46071680790072.6246772-CDS-C-tenellus_contig797:4413..4607Choristocarpus tenellus KU2346CDSC-tenellus_contig797 4414..4607 -
1680790072.6349387-CDS-C-tenellus_contig797:5016..51301680790072.6349387-CDS-C-tenellus_contig797:5016..5130Choristocarpus tenellus KU2346CDSC-tenellus_contig797 5017..5130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.6456325-UTR-C-tenellus_contig797:5130..52211680790072.6456325-UTR-C-tenellus_contig797:5130..5221Choristocarpus tenellus KU2346UTRC-tenellus_contig797 5131..5221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig797.2.1prot_C-tenellus_contig797.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig797 3071..5130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig797.2.1

>prot_C-tenellus_contig797.2.1 ID=prot_C-tenellus_contig797.2.1|Name=mRNA_C-tenellus_contig797.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=165bp
MSSTLDPGILQGSAFFPSFRRTGDPSTEKLHALGSSAKRFNGGGGGWARG
SGTGIRDDARMGLTNTLIQTDTHMVMRAGPVPGDAAAHASSANDVSGRVL
SHGWAYLCADGAVFAWEQGMVASGGSGTGPSCLCFDHPSMAGELAAVRAL
EAPVEAADLVAISDV
back to top

mRNA from alignment at C-tenellus_contig797:3071..5221-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig797.2.1 ID=mRNA_C-tenellus_contig797.2.1|Name=mRNA_C-tenellus_contig797.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2151bp|location=Sequence derived from alignment at C-tenellus_contig797:3071..5221- (Choristocarpus tenellus KU2346)
GCCTACTACAGGTGTTGAAGTCTTGGTGCATCCCATACCTCAAACCAATC
CAACTGAGTTTAGCTGTTTGAGGATAGATCAACTTTGAATCATGTCTTCG
ACCTTGGATCCTGGCATACTCCAAGGCTCGGCTTTCTTTCCCTCTTTCCG
CAGAACTGGAGATCCTTCCACGGAAAAGCTACATGCACTGGGCTCATCTG
CTAAGGTTGCTGATAAGTAGGCCATGGGGGCATGCTAGTCTCCAATACAT
CAGTTCCGTCCAATACACACAGATGGATATCAGAACCCAGCACCTCTAGC
TTGTTCTAGCAAACCTTTCTTCATATTCTATCTGAGGGGTGTGTATCTTG
TTGGAATAGTAACCTTTTTGCAGTCCCTCGCCACAAGGTCCTTCCACTAT
ACCCTCGATAAGGCTGCCTAAGATTTCTCCCTCATTGCCACCCGGCGTCT
TAAAGACTCTTGGTAGTTGAACAGCCTATAAATTCAGCAGCAACAAAAGA
CCAAATGGAAGGTGGACTTAGAAAATGTGCTAATAAAGCGCATCTGTCCA
CACCTCGTGGCATACCCACCCCTTCCTCAACCCTCTTTGCGTTCCTTGTT
TGCGCCCCTGGCAGCGATTCAATGGTGGAGGTGGTGGCTGGGCAAGGGGT
TCGGGAACAGGTATCCGTGACGATGCCCGAATGGGTCTGACTAACACGCT
AATCCAAACGGACACTCATATGGTCATGCGAGCTGGACCTGTACCAGGAG
ATGCAGCTGCACATGCTTCCTCAGCCAACGACGTCTCAGGGAGGGTGCTA
AGTCATGGGTGAAGAATATAGGGAATGTCAAAACCTTTATGTGTTCCAGT
TTACCTTCAAATCTTGAATGCAGCTTGCTGTACTCTTCTGCAATTTGAAT
TCTTGACAAGGAACGTTTCAATCCTCCTTCTAACTTGCCGTATCAGTTTC
CAGGATGTATATGCTCGAACCCAGAGTTCAAATCATAATGTTTAACAGGC
TATTGAGAGGAAGTATTATTCTATAGTAGGGTGGCTGAGGTAATATATTT
CTCCCTTATTCCCCACCCACGCCTACCTCCTGTTAGATTGCAGTTGTGCG
TTTAGGGAAGCCCTGTAGAACATTCCTCCGTACCAACTTTCTCCCAACTC
CCATCTCATGCTGTTGAAGGTGGGCATACCTTTGTGCGGATGGGGCAGTG
TTTGCGTGGGAACAGGGTATGGTTGCTTCAGGGGGATCAGGAACAGGTCC
AAGCTGCCTGTGTTTCGATCACCCTTCCATGGCTGGGGAGCTGGCTGCCG
TCAGGGCCCTTGAGGGTGCGTAAGACCAGCCTGCAAATGGCTCATTCTTG
GTTTGCTGTAACGGTTGGACATTGCACTGCTTTTTTTTCTGCAGTGTAGT
TATCGTTTGCAATTTTTAGACCAGAGAGTCTTTGAAATCTATAGGAGTAT
GGTGAAACAGTTGCCCTTGCTCAAACGCCTTAACAGTGTTGGCGCTTGAG
CAGAGCTCTGTTACTGTGGAGTCTCCTTTGGCTATGAGCCTATATAAAAT
GGTTGTATCGCAATGAGTTATTCTCTGACTATTCATGGTGAGTGTTGACG
TGTGACCCTAGTTTGGCTGTTCTCCTTCATGGTTTCCTGATGCATTCTTA
CCCCAGTTGGTACACCTCACCCTGCCCTCTGACCTCCGACCAAGGAGACA
TTTCTTAGTTTTAATTCTAGCAAAGGATAGTTTGGTGCAGGTTTGATTGC
TTCCTTGCAAGATCCCCATGTGTGTGTTTGGGGTTTGCTGTGTCTTCAGC
AGTGCACACACAATCCATCTGTGTTAACTATGCAGCTCTTGTGTCATGGC
AAGGGTGTTGGATGAAAATGATTTCTTGGCTGTGAGGATCAGCCTTCAAC
GTTGCAGTACAGTACTGTGCTAGATGACAGTGTGCTCCCCTGGTATAAGC
CAGAGGTCAACCCTTTGCAACTAAATGCATTGGTGGGTCCCTAGGCTTGA
CACATGCAAGCCCTCCCCGACCCCACCCCCCATACCCCCCCCAACTCGCC
TTTACTTATTACCCTTTCATGATGGGTAAATTTACCCTCTTTGACTACAA
ACCTATGCAGCCCCTGTGGAAGCAGCAGATCTGGTGGCTATCTCAGATGT
C
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig797:3071..5221-

>mRNA_C-tenellus_contig797.2.1 ID=mRNA_C-tenellus_contig797.2.1|Name=mRNA_C-tenellus_contig797.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=495bp|location=Sequence derived from alignment at C-tenellus_contig797:3071..5221- (Choristocarpus tenellus KU2346)
ATGTCTTCGACCTTGGATCCTGGCATACTCCAAGGCTCGGCTTTCTTTCC
CTCTTTCCGCAGAACTGGAGATCCTTCCACGGAAAAGCTACATGCACTGG
GCTCATCTGCTAAGCGATTCAATGGTGGAGGTGGTGGCTGGGCAAGGGGT
TCGGGAACAGGTATCCGTGACGATGCCCGAATGGGTCTGACTAACACGCT
AATCCAAACGGACACTCATATGGTCATGCGAGCTGGACCTGTACCAGGAG
ATGCAGCTGCACATGCTTCCTCAGCCAACGACGTCTCAGGGAGGGTGCTA
AGTCATGGGTGGGCATACCTTTGTGCGGATGGGGCAGTGTTTGCGTGGGA
ACAGGGTATGGTTGCTTCAGGGGGATCAGGAACAGGTCCAAGCTGCCTGT
GTTTCGATCACCCTTCCATGGCTGGGGAGCTGGCTGCCGTCAGGGCCCTT
GAGGCCCCTGTGGAAGCAGCAGATCTGGTGGCTATCTCAGATGTC
back to top