mRNA_C-tenellus_contig7964.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7964.1.1
Unique NamemRNA_C-tenellus_contig7964.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7964.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7964contigC-tenellus_contig7964:4201..6094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT56
PFAMsDTW
Model size1446
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.62e-08
EggNOG OGsCOG3148@1|root,KOG4382@2759|Eukaryota
DescriptionDTW
Cds size231
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.1653266-UTR-C-tenellus_contig7964:4200..48821680790072.1653266-UTR-C-tenellus_contig7964:4200..4882Choristocarpus tenellus KU2346UTRC-tenellus_contig7964 4201..4882 -
1680790072.2058651-UTR-C-tenellus_contig7964:5531..57911680790072.2058651-UTR-C-tenellus_contig7964:5531..5791Choristocarpus tenellus KU2346UTRC-tenellus_contig7964 5532..5791 -
1680790072.2199452-UTR-C-tenellus_contig7964:5821..60941680790072.2199452-UTR-C-tenellus_contig7964:5821..6094Choristocarpus tenellus KU2346UTRC-tenellus_contig7964 5822..6094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790072.1807559-CDS-C-tenellus_contig7964:4882..50441680790072.1807559-CDS-C-tenellus_contig7964:4882..5044Choristocarpus tenellus KU2346CDSC-tenellus_contig7964 4883..5044 -
1680790072.19496-CDS-C-tenellus_contig7964:5462..55311680790072.19496-CDS-C-tenellus_contig7964:5462..5531Choristocarpus tenellus KU2346CDSC-tenellus_contig7964 5463..5531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7964.1.1prot_C-tenellus_contig7964.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7964 4883..5531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7964.1.1

>prot_C-tenellus_contig7964.1.1 ID=prot_C-tenellus_contig7964.1.1|Name=mRNA_C-tenellus_contig7964.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=77bp
MWLLVVGYPLCGMPASKTSTHLTVLEPTPEGLKTALHLREVFSMMVSHQL
QRTGIPRFVDRKAKTLNRKATPPRGQ*
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mRNA from alignment at C-tenellus_contig7964:4201..6094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7964.1.1 ID=mRNA_C-tenellus_contig7964.1.1|Name=mRNA_C-tenellus_contig7964.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1894bp|location=Sequence derived from alignment at C-tenellus_contig7964:4201..6094- (Choristocarpus tenellus KU2346)
ATCCTGTGTCGAGTACAGCACCTTTGGGATGAAGCTATCATTAGTACCCA
TGTTCGAAGACAGTCAAGCACATGTTCTCTGATAGGTTGTGCTCTTGTTC
AATGCCCAACAGCACCACCATGGTGCACTATGATTTTCTAACCCTAACCC
TAAAAAATATTGTCATGCCCTAATAAAGGTAGTGGCTTGAGTCCAGTGGA
CTGGACTTGCCTTTTGTTATTTGATGGTTGTGATAGAAAACCTTGGAATT
CATTCTAAACCCAGGTTGTGTCTGTCCTCAGCAGAATCCAAACGGCCGTC
CAGTATCATTATTGGCATGCCCATGGGTATCAATCAAAACCATTGGCATC
AATATATTTGAACGTAGGTGTCTACTTTAGGCTGCACAGAATTATGTTCT
TATGGTGAGAATTTGTTAAACTTCTGTAGCCTCAGGGGTACTTCAATGTG
CTGCCTTGAACTTGCCCTATGATGTATTTGTTTACCTTAAGGTGAGCACA
TTTTGCAGGGGGTTTCGGACGAGCCTCTGCCTACTGCACATTAGACAGTG
CGCTTGAACATGCATGTGGCTGTTGGTGGTGGGATATCCACTTTGTGGAA
TGCCTGCTTCTAAAACTTCAACACACCTCACGGTACTACTACAACTGGCC
TTCTTTCTATGTGTTGTGTTTGTTATTTCTCAATGAGCAAGACTGTCGCC
TCCTTGATACACTCAATTTCATTTTCTTGGAATCTTTTACATCCCTGGAC
AGTTGACTGTGAGGGGGTGGAGAACTGGCATCTTAGCTTGCCCCCAAGAA
AAAAAGTCAAGAAATTGATGATGAGTGGCTTATTTACAAGGCCCGTAGAC
CTCTAGTCCATCAGATATACCTCCTGCTTTATTGCCATGGAAGCGGCAAG
GTATTGCAGGCATTTTCAAACCTCTGTATTGAGCTGTTGAATGAGACAGC
CAGATAAAGTACCCTCTCACCCCCACCCCACCCGCTCTCTTCACGACCTT
TTTACCATGTCTGTATCTTGCTCTCTACCCTTACCCCCTGTACTTGTCAG
GTACTGGAGCCGACTCCAGAAGGCCTGAAAACAGCCCTACACCTTCGGGA
GGTGTTCTCAATGATGGTCTCCCATCAATTGCAACGGACAGGAATACCCC
GATTTGTTGACCGTAAGGCAAAGACCTTGAATAGAAAGGCCACACCACCC
CGAGGGCAGTAGGAGCCTAGGGGAGAGCACTGGTTGGGGAAGGGGAAGTG
CTTGGATAGAGTAGGAGGAAGTCTGTGAGAGCACTATCATGTGGAGGAAG
GGAAACAAAAGAGGATGACCCTACCTGTAACACAATGGCAGAGATTTGTT
TATTTTTCGAAAGTATGTACCAGGCACTATTTTATATTATAGTACAGTAG
TGTATCACTTTTTGTATTCTTGCGATCCTTGAGTTGGAGCTAAATTGGAG
AACAAATAGGCGGTAAACTGAATGTAGATGTCGTTCTGTGATCTCGTGTA
AAGGACAGTGTGGGTACTGAACAATTTTCGACTTGGAGTGTGCAGAGAAT
GAAGTCGCTTTCACCATTCTTGGAAGTACAGAACTACTCTGTGTACAGTA
CTTCATATGCAGTCTTACCAGCCTTGTGAGTGCTATACTTGCTCAATTTT
GAGATGCAGTATAGTAGTTACAATGTACCTATGCTAGGGTTAGTGTTGAG
ATCTTGCTGTGGGTGCATATTCGTACATCAGTACCAGCATCATTGAAGTT
GTGTTACCATCACCAATAGCACATGGTGCGGAATGCTGCTGTTCACAACA
TCGGCTCTCAATCAAGACACATATTTAGTCTATCCTTGCCTCAATTCAGA
ATGCACTGCACTTAGTGATGACACTTAGTGATGCACGTGCCGCA
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Coding sequence (CDS) from alignment at C-tenellus_contig7964:4201..6094-

>mRNA_C-tenellus_contig7964.1.1 ID=mRNA_C-tenellus_contig7964.1.1|Name=mRNA_C-tenellus_contig7964.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=231bp|location=Sequence derived from alignment at C-tenellus_contig7964:4201..6094- (Choristocarpus tenellus KU2346)
ATGTGGCTGTTGGTGGTGGGATATCCACTTTGTGGAATGCCTGCTTCTAA
AACTTCAACACACCTCACGGTACTGGAGCCGACTCCAGAAGGCCTGAAAA
CAGCCCTACACCTTCGGGAGGTGTTCTCAATGATGGTCTCCCATCAATTG
CAACGGACAGGAATACCCCGATTTGTTGACCGTAAGGCAAAGACCTTGAA
TAGAAAGGCCACACCACCCCGAGGGCAGTAG
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