mRNA_C-tenellus_contig791.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig791.1.1
Unique Name	mRNA_C-tenellus_contig791.1.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5KB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB86_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 9.400e-10
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 2

Query:   92 VVDTLVVTTSTPF----FRVESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            V DT  +T +  F      VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:   18 VRDTCPLTNAASFKLTTLAVESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 98

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.810e-9
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:   34 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 95

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.020e-8
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:   72 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 133

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-8
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:   74 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 135

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.870e-8
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:  111 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 172

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5JEF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.250e-8
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 2

Query:  125 PFFRVESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            P+  VES GRL  +     ++EL THAVG R  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:   39 PYLAVESFGRLGDEGYE-FINELATHAVGARDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 104

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.600e-8
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:  223 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 284

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.940e-8
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:  246 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 307

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.220e-8
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:  232 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 293

[Close]

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.430e-8
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 2

Query:  137 VESLGRLHKQAESGLLDELVTHAVGGRGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKM 325
            VES GRL ++     +DEL THAVGGR  G    K   K RL Q+VSV TQVA+SRRV R+K+
Sbjct:  300 VESFGRLGEEGYE-FIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKL 361

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig791.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KB86_9PHAE	9.400e-10	48.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2J3_9PHAE	4.810e-9	55.56	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZN4_9PHAE	1.020e-8	55.56	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JL29_9PHAE	1.060e-8	55.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAD2_9PHAE	1.870e-8	55.56	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JEF1_9PHAE	2.250e-8	50.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPW7_9PHAE	4.600e-8	55.56	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K198_9PHAE	4.940e-8	55.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUN7_9PHAE	5.220e-8	55.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDZ4_9PHAE	5.430e-8	55.56	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig791	contig	C-tenellus_contig791:8608..9062 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	455
Hectar predicted targeting category	other localisation
Exons	1
Cds size	306

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790068.3647165-UTR-C-tenellus_contig791:8607..8692	1680790068.3647165-UTR-C-tenellus_contig791:8607..8692	Choristocarpus tenellus KU2346	UTR	C-tenellus_contig791 8608..8692 -
1680790068.3897388-UTR-C-tenellus_contig791:8998..9062	1680790068.3897388-UTR-C-tenellus_contig791:8998..9062	Choristocarpus tenellus KU2346	UTR	C-tenellus_contig791 8999..9062 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790068.3782058-CDS-C-tenellus_contig791:8692..8998	1680790068.3782058-CDS-C-tenellus_contig791:8692..8998	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig791 8693..8998 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig791.1.1	prot_C-tenellus_contig791.1.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig791 8693..8998 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig791:8608..9062-
coding sequence from alignment at C-tenellus_contig791:8608..9062-

protein sequence of mRNA_C-tenellus_contig791.1.1

>prot_C-tenellus_contig791.1.1 ID=prot_C-tenellus_contig791.1.1|Name=mRNA_C-tenellus_contig791.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=102bp
MVCHTVYIYVVDTLVVTTSTPFFRVESLGRLHKQAESGLLDELVTHAVGG
RGTGGFTRKRTVKSRLRQVVSVTTQVALSRRVIRFKMDTPRRWARRGLLD
S*

mRNA from alignment at C-tenellus_contig791:8608..9062-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig791.1.1 ID=mRNA_C-tenellus_contig791.1.1|Name=mRNA_C-tenellus_contig791.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=455bp|location=Sequence derived from alignment at C-tenellus_contig791:8608..9062- (Choristocarpus tenellus KU2346)
ATATATCAACCAACGCCAACTATTTGTAAAAGCACAACTTTAGGGTGTAC
GTGACCAAAACAACATGGTCTGTCATACCGTATATATATATGTAGTTGAT
ACTCTCGTAGTTACAACGTCAACACCTTTCTTTCGAGTGGAGAGTTTGGG
GCGCCTCCACAAGCAAGCGGAAAGTGGTCTTCTGGATGAGCTAGTTACGC
ACGCGGTAGGGGGGAGAGGAACAGGAGGTTTTACCAGGAAGAGGACTGTC
AAATCCCGTCTACGACAGGTAGTTTCTGTTACAACACAGGTAGCCCTATC
CAGACGGGTCATACGCTTTAAGATGGACACACCAAGGAGATGGGCAAGGA
GGGGCTTGTTAGATTCGTAAATGTGAAAAAACAATAATTTACTATTTTAC
TACCAACTATGCTGTACCACTGCCTCCTGTGCCTCCAACCTAGCTATTCC
TGCAC

Coding sequence (CDS) from alignment at C-tenellus_contig791:8608..9062-

>mRNA_C-tenellus_contig791.1.1 ID=mRNA_C-tenellus_contig791.1.1|Name=mRNA_C-tenellus_contig791.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=306bp|location=Sequence derived from alignment at C-tenellus_contig791:8608..9062- (Choristocarpus tenellus KU2346)
ATGGTCTGTCATACCGTATATATATATGTAGTTGATACTCTCGTAGTTAC
AACGTCAACACCTTTCTTTCGAGTGGAGAGTTTGGGGCGCCTCCACAAGC
AAGCGGAAAGTGGTCTTCTGGATGAGCTAGTTACGCACGCGGTAGGGGGG
AGAGGAACAGGAGGTTTTACCAGGAAGAGGACTGTCAAATCCCGTCTACG
ACAGGTAGTTTCTGTTACAACACAGGTAGCCCTATCCAGACGGGTCATAC
GCTTTAAGATGGACACACCAAGGAGATGGGCAAGGAGGGGCTTGTTAGAT
TCGTAA