mRNA_C-tenellus_contig7902.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7902.2.1
Unique NamemRNA_C-tenellus_contig7902.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: D8LJ72_ECTSI (Photosystem II 11 kDa protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ72_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.180e-32
Identity = 58/68 (85.29%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    7 KQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            K+M +FV+NYRRS++I+G+LSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRL+QEY DIERAIKRQR
Sbjct:  139 KEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206
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BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: A0A836CEQ5_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.030e-29
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    7 KQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            ++M DFV+ YRR  ++SG+LSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRL++EYN IE+AIKRQR
Sbjct:  129 QEMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLLEEYNQIEKAIKRQR 196
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BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: A0A7S2UVY8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.720e-28
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    7 KQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            KQM DFVA YRR+  ++GRLSYS LYTSI+VLAGHYASYGPKFPVPEKRRKRL+QEYNDIE+ +++ R
Sbjct:  151 KQMVDFVAQYRRNNKVNGRLSYSTLYTSINVLAGHYASYGPKFPVPEKRRKRLLQEYNDIEKNMRKNR 218
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BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: A0A836C8X1_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.930e-28
Identity = 52/68 (76.47%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    7 KQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            ++M DFV+ YRR  ++SG+LSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRLM+EY+ I++AIKRQR
Sbjct:  117 QEMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLMEEYSQIDKAIKRQR 184
[Close]
BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: F0YDF6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDF6_AURAN)

HSP 1 Score: 100 bits (249), Expect = 4.710e-26
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 TMKQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            T K+M DFVA YRR T++SG+ S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY +IE+ IK++R
Sbjct:   33 TKKEMIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102
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BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: A0A6V1P1T2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P1T2_HETAK)

HSP 1 Score: 101 bits (251), Expect = 2.450e-25
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 TMKQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            T KQM DF++ YRR  ++SG++SYS LYTS++VLAGHYASYG KFPVPEKRRKRL QEY +IE+ +K+QR
Sbjct:  120 TKKQMIDFISYYRRFPNVSGKMSYSTLYTSVNVLAGHYASYGTKFPVPEKRRKRLAQEYAEIEKNLKKQR 189
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BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: A0A7S3ZPN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPN6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.340e-24
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    7 KQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            K+M DFV+ YRR T++SG+ S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY ++E+ IK++R
Sbjct:   67 KEMIDFVSFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLFQEYAEVEKNIKKRR 134
[Close]
BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: A0A7S3NKQ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKQ6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.690e-24
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 TMKQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            T K+M  FVA YRR T+++G+ S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY++IE+ IKR+R
Sbjct:  114 TKKEMNAFVAFYRRFTTVTGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYDEIEKNIKRKR 183
[Close]
BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: W7TYA6_9STRA (Photosystem ii 11 kd protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYA6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.220e-23
Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:   10 QMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKRQR 210
            +MTDFV+ YRR  +++G+ S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+ +I+R IKR R
Sbjct:  124 EMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
[Close]
BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Match: A0A7J7IJC1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJC1_9RHOD)

HSP 1 Score: 92.4 bits (228), Expect = 7.240e-22
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 TMKQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLMQEYNDIERAIKR 204
            T KQM DFVA YRR+ +I+G +S+S LYT+I+ LAGH+ASYG  +PVPEKRRKRL Q+ ND+ERA+ R
Sbjct:  121 TRKQMNDFVALYRRNPNIAGAVSFSTLYTAINTLAGHFASYGSMYPVPEKRRKRLEQQLNDVERALSR 188
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7902.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ72_ECTSI2.180e-3285.29Photosystem II 11 kDa protein n=2 Tax=Ectocarpus T... [more]
A0A836CEQ5_9STRA7.030e-2977.94Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A7S2UVY8_9STRA1.720e-2876.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836C8X1_9STRA2.930e-2876.47Photosystem II Pbs27-domain-containing protein n=1... [more]
F0YDF6_AURAN4.710e-2670.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6V1P1T2_HETAK2.450e-2568.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3ZPN6_9STRA1.340e-2467.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NKQ6_9STRA1.690e-2468.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W7TYA6_9STRA3.220e-2365.67Photosystem ii 11 kd protein n=2 Tax=Monodopsidace... [more]
A0A7J7IJC1_9RHOD7.240e-2264.71Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7902contigC-tenellus_contig7902:5120..5989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJ72
PFAMsPSII_Pbs27
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K08902
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0009628,GO:0009642,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055035,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0071704,GO:0104004,GO:1901564
Exons2
Evalue2.42e-33
EggNOG OGs2CXSW@1|root,2RZI3@2759|Eukaryota
Ec32 ortholog descriptionphotosystem II 11 kDa protein
Ec32 orthologEc-02_005010.1
DescriptionPhotosystem II Pbs27
Cds size210
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790068.0360491-CDS-C-tenellus_contig7902:5119..51611680790068.0360491-CDS-C-tenellus_contig7902:5119..5161Choristocarpus tenellus KU2346CDSC-tenellus_contig7902 5120..5161 -
1680790068.0521083-CDS-C-tenellus_contig7902:5818..59861680790068.0521083-CDS-C-tenellus_contig7902:5818..5986Choristocarpus tenellus KU2346CDSC-tenellus_contig7902 5819..5986 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790068.062267-UTR-C-tenellus_contig7902:5986..59891680790068.062267-UTR-C-tenellus_contig7902:5986..5989Choristocarpus tenellus KU2346UTRC-tenellus_contig7902 5987..5989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7902.2.1prot_C-tenellus_contig7902.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7902 5120..5986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7902.2.1

>prot_C-tenellus_contig7902.2.1 ID=prot_C-tenellus_contig7902.2.1|Name=mRNA_C-tenellus_contig7902.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=70bp
MKQMTDFVANYRRSTSISGRLSYSNLYTSISVLAGHYASYGPKFPVPEKR
RKRLMQEYNDIERAIKRQR*
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mRNA from alignment at C-tenellus_contig7902:5120..5989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7902.2.1 ID=mRNA_C-tenellus_contig7902.2.1|Name=mRNA_C-tenellus_contig7902.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=870bp|location=Sequence derived from alignment at C-tenellus_contig7902:5120..5989- (Choristocarpus tenellus KU2346)
ACAATGAAACAGATGACCGACTTCGTGGCAAACTACCGCCGGTCAACATC
TATCTCTGGAAGGCTTTCTTACTCTAACCTGTACACATCTATCAGTGTGC
TTGCCGGCCACTATGCCAGTTACGGACCCAAGTTCCCCGTGCCCGAGAAG
CGCCGGAAGCGCCTGATGCAGGTGTAGAAAAATGTGTATGTATTACATAA
GTATGTATGTATTGTGTGTGCGTGTGTGTGTGTCTTGCATGATAACATTT
TTTTTCTTTTTTAATATTGATGGTGATTTAAAATAAATATTTTAACTTGA
AAAGTTGAAGAGTCTTCTAAGAGCGCGGAGGGTTTTGTTTGCAGGCGCAG
GTAAATCGGAGTAGGTAAGAACCGATATTCTTTGTTGCTGTTTGCATATC
GTTTGCAATGGATTCGAGCACGGAGGCGTTTTCAATTTGGCAGTGTGAAT
ACATGCGGTGATCTTTTGCCTACTCCTACTCCTCTCTTCCTCCCTCTTGT
TTTCTCAGTGAATCGTGCCATGCCTGTCCCTTTTTGGAATAAAAGGAAAT
GCTGTGATGTCGTGTGTTTTGTTGTGGGAGGGGGGGAGGGGGGGGGCTGT
GTAGGGTTCAGTAGCACGAACAATCAAGTGTGTGTTTTTGTTCTTGTTCT
CCCGTGTGTGTGTTTTTTTTATTAGACACAGAAATGTCAGCGCCAGTAAA
AAATTCTCTCATGCACTTTGGCCTCCCATCATCAGTCAACATACAAATCT
CAGCTGTCCCTCCCCCCCCTCCCACCTACCAATATGTACAATACACACAC
CCATCTGCTATCATGCTCGTGCTCACAGGAATACAATGACATTGAGCGTG
CTATCAAGCGCCAGCGCTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7902:5120..5989-

>mRNA_C-tenellus_contig7902.2.1 ID=mRNA_C-tenellus_contig7902.2.1|Name=mRNA_C-tenellus_contig7902.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=210bp|location=Sequence derived from alignment at C-tenellus_contig7902:5120..5989- (Choristocarpus tenellus KU2346)
ATGAAACAGATGACCGACTTCGTGGCAAACTACCGCCGGTCAACATCTAT
CTCTGGAAGGCTTTCTTACTCTAACCTGTACACATCTATCAGTGTGCTTG
CCGGCCACTATGCCAGTTACGGACCCAAGTTCCCCGTGCCCGAGAAGCGC
CGGAAGCGCCTGATGCAGGAATACAATGACATTGAGCGTGCTATCAAGCG
CCAGCGCTAA
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