mRNA_C-tenellus_contig7897.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7897.1.1
Unique NamemRNA_C-tenellus_contig7897.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7897.1.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 9.610e-11
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 1 
Query:  268 GDITGLKVKASWFDRR---SSKEGGCKKSG---CRPRRVLDEKITA-ESRWSCKKSLLSHPEQHCTLTFILDEPQDITRIGIAFHEGNQIVRTLEVSLNGNKLLDRITSSGSTTDLEWFGMNAADVSRLTLQPIGMDEGEWIGITEVMIMVEI 705
            G +T + V A+  D R   SS + GC ++G   C   +  D  I+  ESRWSC  ++L   E  C + F   +PQDI  I +AF EGN+  RT+++ ++G   L     S + +     G+ A + S + L+ + +   EWI + EV+I V++
Sbjct:  160 GTMTEVNVSATAHDTRPGSSSGDVGCGETGGDGCAAIKAHDGIISEIESRWSCA-TMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDIFIDGE--LTHTHESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEVLIFVKV 309
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7897.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI81_ECTSI9.610e-1132.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7897contigC-tenellus_contig7897:786..4009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FL48
PFAMsLRR_8
Model size2043
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue6.58e-17
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size612
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7897.1.1prot_C-tenellus_contig7897.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7897 2121..3913 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790067.5424979-UTR-C-tenellus_contig7897:785..21201680790067.5424979-UTR-C-tenellus_contig7897:785..2120Choristocarpus tenellus KU2346UTRC-tenellus_contig7897 786..2120 -
1680790067.6340835-UTR-C-tenellus_contig7897:3913..40091680790067.6340835-UTR-C-tenellus_contig7897:3913..4009Choristocarpus tenellus KU2346UTRC-tenellus_contig7897 3914..4009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790067.5557923-CDS-C-tenellus_contig7897:2120..21441680790067.5557923-CDS-C-tenellus_contig7897:2120..2144Choristocarpus tenellus KU2346CDSC-tenellus_contig7897 2121..2144 -
1680790067.566278-CDS-C-tenellus_contig7897:2453..25401680790067.566278-CDS-C-tenellus_contig7897:2453..2540Choristocarpus tenellus KU2346CDSC-tenellus_contig7897 2454..2540 -
1680790067.5760176-CDS-C-tenellus_contig7897:2815..29191680790067.5760176-CDS-C-tenellus_contig7897:2815..2919Choristocarpus tenellus KU2346CDSC-tenellus_contig7897 2816..2919 -
1680790067.5879376-CDS-C-tenellus_contig7897:3187..33111680790067.5879376-CDS-C-tenellus_contig7897:3187..3311Choristocarpus tenellus KU2346CDSC-tenellus_contig7897 3188..3311 -
1680790067.602333-CDS-C-tenellus_contig7897:3486..35961680790067.602333-CDS-C-tenellus_contig7897:3486..3596Choristocarpus tenellus KU2346CDSC-tenellus_contig7897 3487..3596 -
1680790067.6199214-CDS-C-tenellus_contig7897:3750..39131680790067.6199214-CDS-C-tenellus_contig7897:3750..3913Choristocarpus tenellus KU2346CDSC-tenellus_contig7897 3751..3913 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7897.1.1

>prot_C-tenellus_contig7897.1.1 ID=prot_C-tenellus_contig7897.1.1|Name=mRNA_C-tenellus_contig7897.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=204bp
MNFLPAVALLFTTLGIGSPAAATIPTTDSPTPSPFATFSPTFSPTFSPIT
SVSEVVAGDITGLKVKASWFDRRSSKEGGCKKSGCRPRRVLDEKITAESR
WSCKKSLLSHPEQHCTLTFILDEPQDITRIGIAFHEGNQIVRTLEVSLNG
NKLLDRITSSGSTTDLEWFGMNAADVSRLTLQPIGMDEGEWIGITEVMIM
VEI*
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mRNA from alignment at C-tenellus_contig7897:786..4009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7897.1.1 ID=mRNA_C-tenellus_contig7897.1.1|Name=mRNA_C-tenellus_contig7897.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3224bp|location=Sequence derived from alignment at C-tenellus_contig7897:786..4009- (Choristocarpus tenellus KU2346)
CAAAATCACACTCCACTCTACACATAGTAGTGCTGAGCATACTCCGTTTT
TACAAGATCACGTGCCTATTCCCTTTCTCTAGAGTTGCGATACAGCATGA
ATTTCCTACCAGCTGTTGCCCTTCTCTTTACCACCCTCGGGATCGGCTCA
CCGGCAGCTGCTACGATCCCAACAACCGATTCGCCAACGCCCTCCCCTTT
CGCCACCTTCTCGCCCACCTTCTCGCCCACCTTCTCCCCCATCACCAGCG
TATCAGAAGGTTAGAAATGTTCGATGTTATTGTAGAAAGCTAAGAAAGAG
AAGCGCCAACGTCGATCATTGTATTCCCCCATGGCATCATCTTATCTTTG
TCTTCCTTTCGTCGTCGCTCCCAGCTAAGTCACCCCTACCTATGTTATCA
TACCGTTGCTCAGTCGTTGCAGGTGATATAACTGGATTAAAGGTCAAGGC
CTCGTGGTTCGACAGGCGCAGCAGCAAAGAAGGAGGCTGCAAAAAGAGCG
GCTGCAGGCCCAGGAGAGTCCTGGTCAGTATATATCCACTCACTAACTCG
AAACTGGTGGACTTGGACTCTAGGCTTGATTTCAAAATAAATATATCCGC
TGTGCAGGGCCAAACGAGCGAGGTAGGTAGCCAATCATCAATCCTCTGCT
GAATCCTATGTCTCACCTATGCGCCCCTTTCTATCTCAACAAATATAGGA
CGAAAAGATCACGGCAGAGTCTCGCTGGTCGTGCAAGAAGAGCCTCCTAA
GCCACCCAGAACAACATTGTACACTAACTTTCATCTTAGATGAGCCCCAG
GACATCACTCGCATTGGAATAGGTGCGTTTCTCCACTGGGTTCTTGAATC
GCCCACAAAACGAATGTTGTACACCCTAAGGCCATAAGAACGAAGTATTT
CTGTATGTATGTTGGTCGGATCTTGCCTTTTGACTCTTCATCGTCAGTCA
CAGCGAAAAAAACTGTAGTTATATATACAGATGAACGTCGATGACCAGAG
CACCTCACAATGTCCTCACCTCAATCCGTCAGCGTTCCTTTGATAAATAT
ATATTCATTCACTGTTTTATACTACCTCGCCTTCCATCAGCCTTCCATGA
GGGTAACCAGATAGTGCGGACACTCGAGGTTTCATTGAATGGCAACAAGC
TGCTCGATCGTATCACATCCAGCGGGAGCACCACTGACCTGGAGGTAGGA
ACTAGGGGGCATTTTTGTATTGTGTTGCCTGTGTTCAGGAAGGAACCCCT
TCCTACTCCTGACTATCTTGGAAAGTATGTTCACAGTTAAAACGCAATGA
ACTGCTTCTATTAGTAGTATTTCAAACTTCTAGGATCTTTGAAAGAGTGC
TTTGTCCGAATGATGTACACAGTGGCACATCTCATCAGCCTCCTTAGCAT
TGACCAACTCTTTTTCTCACACTTGTTGTGTCCGTAACGACTGGCCCTTG
TTTGACGTGATTCCAATAGTGGTTCGGCATGAATGCCGCTGATGTCTCCA
GATTGACCCTCCAACCCATTGGTATGGATGAAGGCGAGTGGATCGGCATA
ACCGAGGTAAGTGATTACTGCGTTTAGAGCTAAATTGTAACTAGAAAAGT
AACCACAGCATCTCCACACCAATGGTAGGGTGCACATCAAATGTATCAAG
CTATACAACCACTCACACAGCATTGACATATGACATTCTCTTTAATATGG
GTACCTCTCAATAAATCTGAGGAAAGTCCTCAGAGTGCGGTGGCCTCAAA
ACTATATACTTCTTGCGTCCTTCAATGTGCTGACACCTAAACTCAAGCCC
TGAGTCAATATGTACCAGGCTCTCACAATCTCTAGTGGTACTGTCTACCT
CATTGCCACAACCAGGTCATGATCATGGTCGAGATCTAATCGTCATACAC
ACAGTTGGGGTTTTGGTCGAGCAATCGGCCAGTCACTCCATACATTGAAG
GTGCTCAACCAAGAAAGCGTCCTGGTGAAAGGGAACAAGCAGACATTCTA
CTGACGGACAAAACTCTCTTTTCGCAATAATTCCTGCAAGATAAAAAAAA
ATGTGTTGAATTCTGCCTTTCACTTTGTTGCGATTTTGTCTTTTTTGGAA
AATTTATTCACCAGTCTTGTCATTGTTTTTTTATGTTTACATTGAATCAG
GGTAGATGGAGCAGTGTGATGCTCGAATAAGAACAATCGTTGGGCCCCTA
GCACTTGACACTCAAGGGAACTGAGTATTATGTGGGAAATTTGCTTGTGA
ATTGTGCTGTGTTGTGTCCATGTTGGAAAGGGTAGTGTAAGAACCTAGTG
TTGTGGAGTCATAATGTGGACTTGTGGGGTGGAGGATGTAGTCAGTGTGT
GTGATATTCAAATAGTTATAGCACCTTCCCTGGATCTTTATTCTTGAAGG
GAGTTGTGTATGAGGTATTTTTTGTTGTGAAAGTGTGGTAATTGGCAATC
TGGTGAACAGAAAGACAAGCATTTTGTTGAAGAAGGAACTTTAGTGGTGT
GAAGTTAGAGTCAAGTGCAAAGTTACGACGTTGAAGTAAGAGACAAGAGA
ATCTCTAACGCGGAATACTTCAGGGGGTTTACATATTGTTATTTGCCACA
CTTTTGTGTGGGTTTGGACAATGTTTTTTTCACTTGAAAGGGCATAGCGA
CATAGCGGTATTGGAGAAGAACTTAAGCAACGTGGAAGGGTTAGGGTGCA
GAGTGAAGTTTGAGAACGAACAGTAGTAGTCGCATGAGAAGCCTACTGAT
TGGATTTTGTTCAGTTCGGAAGCTTTGAGAAGGAGGTCCACCTTTTGAAT
CCTGGACTGAGATTCTGAAATATCGAAATTTGAGGAGCATAATTATTTCT
GAGGTTGAACAAAATGGGCATTTTTTGCTGTAAAGGAGTTGTGTTACTGG
CAAGAGCCCAGCCAAAATGAGAACCATGCTGGGATGGTTCTGTGCGTGAG
TGTATATCCCTAGTGTTGTGTTACAGTTTGACAACGTTGTGATCAATCAG
TTTGTTTTGGTTGCCTGCCGATGACGGTGTATATGGTAATTTGCCTCTAT
CTCCCTACAGGTAGTCTGTGTTTCACTTAATCGTAGCAGTGGTAGTAGTA
GCTCTTATATAGTCAGGGTTCATGCATTTGGGAAGCCTTTTACTTCCTAT
GATGATGTGAACCCTTTGCCCTAAGTACGCCTGTCTTAAGGAGAGCTCCC
TCCCTCTTCTTCTAGTGTGACACG
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Coding sequence (CDS) from alignment at C-tenellus_contig7897:786..4009-

>mRNA_C-tenellus_contig7897.1.1 ID=mRNA_C-tenellus_contig7897.1.1|Name=mRNA_C-tenellus_contig7897.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=612bp|location=Sequence derived from alignment at C-tenellus_contig7897:786..4009- (Choristocarpus tenellus KU2346)
ATGAATTTCCTACCAGCTGTTGCCCTTCTCTTTACCACCCTCGGGATCGG
CTCACCGGCAGCTGCTACGATCCCAACAACCGATTCGCCAACGCCCTCCC
CTTTCGCCACCTTCTCGCCCACCTTCTCGCCCACCTTCTCCCCCATCACC
AGCGTATCAGAAGTCGTTGCAGGTGATATAACTGGATTAAAGGTCAAGGC
CTCGTGGTTCGACAGGCGCAGCAGCAAAGAAGGAGGCTGCAAAAAGAGCG
GCTGCAGGCCCAGGAGAGTCCTGGACGAAAAGATCACGGCAGAGTCTCGC
TGGTCGTGCAAGAAGAGCCTCCTAAGCCACCCAGAACAACATTGTACACT
AACTTTCATCTTAGATGAGCCCCAGGACATCACTCGCATTGGAATAGCCT
TCCATGAGGGTAACCAGATAGTGCGGACACTCGAGGTTTCATTGAATGGC
AACAAGCTGCTCGATCGTATCACATCCAGCGGGAGCACCACTGACCTGGA
GTGGTTCGGCATGAATGCCGCTGATGTCTCCAGATTGACCCTCCAACCCA
TTGGTATGGATGAAGGCGAGTGGATCGGCATAACCGAGGTCATGATCATG
GTCGAGATCTAA
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