mRNA_C-tenellus_contig7890.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7890.1.3
Unique NamemRNA_C-tenellus_contig7890.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: A0A7S1TX98_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX98_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.240e-28
Identity = 112/345 (32.46%), Postives = 158/345 (45.80%), Query Frame = 3
Query:   51 KEVWYDEACQQLVVRDGNFYLSVSLKEG---GKDSPRINLGGAGREVLLARFSLGNRALLALQLNSTTVEVVDV---RDGVDDVGVVPGSGSRKVWSIECKHPNVNSI-----------------LSGGVIWSEHGGNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRLRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAG-----LSHLLLLERG---MTKVELKHTV---------RMPFW-------------SPPIC------SVVDNLLCLHFPESEVSVAYDI 908
            + VWYD   Q  V+R G  Y SV    G    + SP + L         ARFSL     LA+Q+ +  V V DV   RDG        G  + + W I+ +    +++                 L+ GV+WS+HGG SQDLVLVTR GLE  K++AK++ CK  +  I ++   FW+ P  RL+LL TG +G  M GY+L F+  D  +L +P P S P F + L     +  +E   L+ ++   YC+ +    G     +++L  +ER    +T V   HT            PF              SP +       SVVDNLL LH      SVA+DI
Sbjct:   81 ESVWYDGVQQHFVLRRGAAYHSVGCVGGRAAARVSPGVLLPHEAARAQYARFSLDG-CYLAVQVGAAEVHVFDVSAARDG--------GGRATQQWRIDVRSLGQSALSKLKSQSGGAAMAPPVLLTDGVLWSDHGGTSQDLVLVTRRGLEFFKVNAKKNSCK-HYRSIYNATSAFWFSPTSRLVLLSTGPTGTRMCGYFLPFDTSDMPKLEIPPPHSAPIFDLGLHGAPSLQARE-VGLVTLYNYDYCLQLLPGGGKADNPVAYLYRVERERITLTHVLALHTALHWGAPGSGTAPFPGGGQSGGQSGQAPSPSLFRAGMTHSVVDNLLVLHSGGMRESVAFDI 414          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: A0A7S2HM34_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HM34_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.570e-26
Identity = 73/193 (37.82%), Postives = 105/193 (54.40%), Query Frame = 3
Query:  372 IWSEHGGNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRL--RLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHTVRMPFWSPPI-CSVVDNLLCLHFPESEVSVAYDIHGAVNPPSRGG 941
            IWS+HGGNSQDL+++T  G E +K+S KR QCKLS +L   +   + Y P QRLLLL TG  G  +R ++L   +   L  +L LP P+ VP F +     R   G  H  L+C++ +VYC  ++ I    +   + R    ++   T+ +         SVVDNL+C H  ES++S+ YDI      P  GG
Sbjct:    1 IWSDHGGNSQDLIILTPRGAEFYKVSTKRGQCKLSRSLSYTTTA-WCYCPEQRLLLLATGVDGQELRAWFLKSTSSSDLPFKLELPPPDKVPKFHV---PHRIRAGNLH--LVCVYNKVYCCLLDSITATVYAYEVTRD-DGIQPAQTLNLYIRGDAFKVSVVDNLICFHSTESKISMLYDIRAPTADPITGG 186          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: F0YL77_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL77_AURAN)

HSP 1 Score: 115 bits (287), Expect = 1.510e-23
Identity = 100/324 (30.86%), Postives = 142/324 (43.83%), Query Frame = 3
Query:   60 WYDEACQQLVVRDGNFYLSVSLKEGGKDSPRINLGGAGREVLLARFSLGNRALLALQLNSTTVEVVDVRDG-----VDDVGVVPGSGS---RKVWSIECKHPNVNSILSGGVIWSEHGGNSQDLVLVTRIGLELHKISAKRDQCKL----SHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRLRLALPKPESVPNFKII-LPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKH----------------------TVRMPFWSPPICSVVDNLLCLHFPESEVSVAYDIHGAVNP 926
            +YDEA  Q+VV+    +++  L  G    P   +        LA  SL   +LLA+Q++ T V V +  DG     V+  G  PG G+   R              ++ GGV+WS+HGG SQDL++VT  G +L+K+S+ R QCKL     HA  C     F Y P  RLL+L TG  G+ +R Y+L  +  D  R  LP PE VP   +    AGR    + HA L  +  R +       A     LLL     +  L H                      T+   F  P   S  D+LL +H  ++  +  +D+ G   P
Sbjct:   55 FYDEALGQVVVQRKATFVAYGLGRGAAAPPPRGVLVGATACRLAVSSLDG-SLLAVQVSETLVLVAEA-DGPRRWRVEVRGGAPGVGAFLERLAGGXXXXXDGAPRVVPGGVLWSDHGGTSQDLIVVTTRGADLYKVSSARGQCKLVRTLGHATRC-----FRYAPAHRLLVLATGPDGSELRCYFLRRDVGDLPRFELPPPERVPPLALAGYGAGRGGTRERHAQLQRLLSRPFSTRAGGPALDPRDLLLAAAYGEPLLLHRRPGARALDVFAVRRDGCAPLRTLEPGFPGPYGVSATDDLLLVHGAKARATAVFDVRGPRGP 371          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: A0A482SV28_9ARCH (Mic1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV28_9ARCH)

HSP 1 Score: 115 bits (289), Expect = 1.290e-22
Identity = 92/297 (30.98%), Postives = 145/297 (48.82%), Query Frame = 3
Query:   60 WYDEACQQ-LVVRDGNFYLSVSLKEGGKDSPRINLGGAGREVLLARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSGSRKVWSIECKHPNVNSILSGGVIWSEHGGNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNH----------MRGYWLCFEAPDRLRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHTVRMPFWSPPIC---SVVDNLLCLHFPESEVSVAYDI 908
            W+D A    L+  DG+ Y+    +E        +      +++L+R SL ++ LLA+Q++ TT  +V+V              S + W++E K P    IL GGV+WS+HGGNSQDLVLVT  GLEL KISAK++ CKLS  +   S   FWY    R++LL + +  +           M G++L  +      L LP P+ +P F++    G  V   +   +L ++GR+  + V   AG    L + + +TK  ++    +P          S  DNL+  H    + S  +D+
Sbjct:   25 WFDPAHNHCLLYNDGSIYVLWLNEEHPTPKLLYHKADMTSDIILSRVSL-DKELLAIQISLTTCWIVEV-------------SSNRTWTVEVKLPAETIILKGGVMWSDHGGNSQDLVLVTSKGLELFKISAKKNVCKLSRVVAQPSFA-FWYNAHHRMILLASYSKPSRFGKAKKDVLLMDGFFLKTDRSAVPTLELPPPDRIPRFEL----GPGV-SSDSIHVLSVYGRLLTL-VQYSAGTEDFLTVYQ-LTKTSVERIYCLPLGGVVNALRVSTHDNLVICHNLPDKSSRVFDL 299          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: K3X8P4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8P4_GLOUD)

HSP 1 Score: 90.5 bits (223), Expect = 1.060e-15
Identity = 74/250 (29.60%), Postives = 118/250 (47.20%), Query Frame = 3
Query:  159 LGGAGREVLLARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSGSRKVWSIECKHPNVNSILSGGVIWSEHG---GNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRLRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHTVRMPFWSPPICSVVDNLLCLHFPESEVSVA 899
            +GG G  V+  +   GN   +AL   S   + + V+    +V V+  +   K W I CK    N IL+ G++W+ H    G+SQDL L+T++G+E +++S KR  C L H  I   +  FWY     +L++ TG+  N +  Y L   + ++L      P  V +  +         GK    L  ++G+VY V  +  +    L L+ER          + +P  +    SVVDNLL  H  +  VS+A
Sbjct:  114 VGGRGDHVVAEKE--GNMEPVALMKLSLDKQFLAVQTSDIEVQVIRLTTREKFW-IMCKPNAGNRILTDGIVWNVHASTPGSSQDLFLITKMGIEQYRVSIKRRNCAL-HRSIGVYIHTFWYTASHSVLIISTGSRANEIVPYLLRGSSVEKL------PRLVFSSSV---------GKNDLYLASLYGQVYAVYGDTRSTKLLLYLVERNKVSCTRSLNLLLPPGTALEYSVVDNLLVCHSLDFNVSLA 344          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: A0A0W8C5I3_PHYNI (Mic1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C5I3_PHYNI)

HSP 1 Score: 90.9 bits (224), Expect = 5.760e-15
Identity = 73/246 (29.67%), Postives = 117/246 (47.56%), Query Frame = 3
Query:  180 VLLARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSGSRKVWSIECKHPNVNSILSGGVIWSEHG---GNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRLRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHTVRMPFWSPPICSVVDNLLCLHFPESEVSVAYDI 908
            ++L + S+ ++  LA+Q +   V+V+D              G+R  + + CK    N IL GG+IW+ H     +SQDL LVT++GLE H++S+KR  C L H  +   V  FWY     +LL+ +G+  N +  + L     ++L      PE V +  +          K+   L+ ++G +Y V  +  +    L L+ R          V +P  +    SVVDNLL  H  E  VS+ +DI
Sbjct:   91 IILLQLSVDSQ-FLAIQRSDIEVQVLD-------------RGTRASYWVLCKSKAGNRILHGGIIWNTHSLKATSSQDLFLVTKLGLEHHRVSSKRRSCAL-HRTVGLYVHEFWYAASHGVLLVSSGSRANEVVSFLLHGTNAEKL------PELVFSTSV---------SKQDLHLVTLYGDLYVVYSDTRSTKLLLYLVGRAKVTCVRSLNVMLPPGTALEYSVVDNLLVCHSMEFNVSMFFDI 306          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: W2R2V3_PHYPN (Mic1 domain-containing protein n=10 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R2V3_PHYPN)

HSP 1 Score: 90.9 bits (224), Expect = 5.880e-15
Identity = 73/246 (29.67%), Postives = 117/246 (47.56%), Query Frame = 3
Query:  180 VLLARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSGSRKVWSIECKHPNVNSILSGGVIWSEHG---GNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRLRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHTVRMPFWSPPICSVVDNLLCLHFPESEVSVAYDI 908
            ++L + S+ ++  LA+Q +   V+V+D              G+R  + + CK    N IL GG+IW+ H     +SQDL LVT++GLE H++S+KR  C L H  +   V  FWY     +LL+ +G+  N +  + L     ++L      PE V +  +          K+   L+ ++G +Y V  +  +    L L+ R          V +P  +    SVVDNLL  H  E  VS+ +DI
Sbjct:   91 IILLQLSVDSQ-FLAIQRSDIEVQVLD-------------RGTRASYWVLCKSKAGNRILHGGIIWNTHSLKATSSQDLFLVTKLGLEHHRVSSKRRSCAL-HRTVGLYVHEFWYAASHGVLLVSSGSRANEVVSFLLHGTNAEKL------PELVFSTSV---------SKQDLHLVTLYGDLYVVYSDTRSTKLLLYLVGRAKVTCVRSLNVMLPPGTALEYSVVDNLLVCHSMEFNVSMFFDI 306          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: A0A2D4BW57_PYTIN (Mic1 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW57_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 8.770e-15
Identity = 83/256 (32.42%), Postives = 121/256 (47.27%), Query Frame = 3
Query:  162 GGAGREVL-LARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSGSRKVWSIECKHPNVNSILSGGVIWSEHGGNSQ---DLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRL-RLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHT--VRMPFWSPPICSVVDNLLCLHFPESEVSVAYDI 908
            G A  E L L R S+ +R  LA+Q +   V+V+ +  G               W I CK  + N I+S GV+WS H   SQ   DL L+T++G+E +++S KR  C L H  I   V  FWY     +L++ TGA  N +  + LC    ++L RL    P        + P  RE+       L  ++G ++ V  +  A    LLL   G +KV    +  V +P  +    SVVDNLL  H  E  VS+ +D+
Sbjct:   89 GAAVHEPLALLRLSV-DRGFLAVQKSDIEVQVLSLATG------------ESHW-IVCKPTSGNRIVSDGVVWSTHATGSQRSQDLFLLTKLGIEQYRVSRKRGDCAL-HRTIAVFVHTFWYSAAHSVLIVSTGARANELVPFQLCASNVEKLPRLVFSTP--------VRP--RELF------LASLYGELFAVYSD--ARSMRLLLYLIGRSKVSCVRSLHVELPPGTALEFSVVDNLLVCHGVEFNVSLFFDV 311          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: A0A8J5J2T4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J2T4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.820e-14
Identity = 77/257 (29.96%), Postives = 124/257 (48.25%), Query Frame = 3
Query:  180 VLLARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSGSRKVWSIECKHPNVNSILSGGVIWSEHG---GNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRLRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHT--VRMPFWSPPICSVVDNLLCLHFPESEVSVAYDIH--GAVNPP 929
            ++L + S+ ++  LA+Q +   V+V+                +R  + + CK    N  L GGVIW+ H     +SQDL L+T++GLE H++S KR  C L H  +   V  FWY     +LL+ +G+  N +  + L     ++L      PE V +  +         GK+   L+ ++G +Y V  +  +  + LLL   G TKV    +  V +P  +    SVVDNLL  H  E  VS+ +DI   G+++ P
Sbjct:   91 IMLLQLSVDSQ-FLAIQRSDIEVQVLH-------------RATRASYWVLCKSKAGNRTLHGGVIWNTHSVKSTSSQDLFLITKLGLEHHRVSYKRRSCAL-HRTVGLYVHEFWYAASHGVLLVSSGSRANEVVPFLLHGTNAEKL------PELVFSTSV---------GKQDLHLVTLYGDLYVVYTDTRS--TKLLLYLVGRTKVTCVRSLNVMLPPGTALEYSVVDNLLVCHSMEFNVSLFFDIKCVGSISDP 315          
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Match: A0A3M6VRF5_9STRA (Mic1 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRF5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.980e-14
Identity = 92/314 (29.30%), Postives = 143/314 (45.54%), Query Frame = 3
Query:   48 NKEVWYDEACQQLVV----------RDGNFYLSVSLKEGGK---DSPRINLGGAGREVLLARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSGSRKVWSIECKHPNVNSILSGGVIWSEH---GGNSQDLVLVTRIGLELHKISAKRDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDRLRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGLSHLLLLERGMTKVELKHTVRMPFWSPPIC--SVVDNLLCLHFPESEVSVAYDI--HGAVNPP 929
            N   W+D A Q +++           D +  L+ S  E      D       G  RE +  R       ++ LQL S   + + ++    +V V+  +     W ++C     N IL GGVIW +H     +SQDL LVT++GLE H++S KR  C L H ++   V  FWYE +  +L L +G+  N +         P  L  A    E++P  K++       +GK+   L+ ++G VY V  N     + LLL   G TKV    ++ +      +   SVVDNLL  H  +  VS  +DI  +G+++ P
Sbjct:   19 NHRAWHDAAHQSVLLLFSTSVKILPMDASLNLTTSSSENLMTLYDFSEPEASGDHREAVQQRKMT---PIMLLQL-SVDGQFLAIQRSDIEVQVLHRATRVSNW-MQCLSKAGNRILHGGVIWRKHFAKSSSSQDLFLVTKLGLEHHRVSLKRRTCFL-HKIVGLYVHAFWYEALHGVLFLSSGSRANEI--------VPFLLHGA--NVETLP--KLMFSTS---VGKQDLHLVTLYGDVYAVYHNPCT--TKLLLYLVGRTKVTCVRSLNLMLSPGTVFEYSVVDNLLVCHSLDFNVSFFFDIKCNGSISDP 309          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7890.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1TX98_9STRA3.240e-2832.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2HM34_9STRA3.570e-2637.82Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YL77_AURAN1.510e-2330.86Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482SV28_9ARCH1.290e-2230.98Mic1 domain-containing protein n=1 Tax=archaeon Ta... [more]
K3X8P4_GLOUD1.060e-1529.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0W8C5I3_PHYNI5.760e-1529.67Mic1 domain-containing protein n=2 Tax=Phytophthor... [more]
W2R2V3_PHYPN5.880e-1529.67Mic1 domain-containing protein n=10 Tax=Phytophtho... [more]
A0A2D4BW57_PYTIN8.770e-1532.42Mic1 domain-containing protein n=1 Tax=Pythium ins... [more]
A0A8J5J2T4_9STRA3.820e-1429.96Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A3M6VRF5_9STRA3.980e-1429.30Mic1 domain-containing protein n=2 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7890contigC-tenellus_contig7890:16..3817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T013593
PFAMsMic1
Model size2935
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.29e-16
EggNOG OGsKOG2377@1|root,KOG2377@2759|Eukaryota,1MAQG@121069|Pythiales
DescriptionMic1 domain-containing protein DDB_G0286707. Source PGD
Cds size2370
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7890.1.3prot_C-tenellus_contig7890.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7890 576..3812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790067.2774127-UTR-C-tenellus_contig7890:15..5751680790067.2774127-UTR-C-tenellus_contig7890:15..575Choristocarpus tenellus KU2346UTRC-tenellus_contig7890 16..575 -
1680790067.3413968-UTR-C-tenellus_contig7890:3812..38171680790067.3413968-UTR-C-tenellus_contig7890:3812..3817Choristocarpus tenellus KU2346UTRC-tenellus_contig7890 3813..3817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790067.2891414-CDS-C-tenellus_contig7890:575..20641680790067.2891414-CDS-C-tenellus_contig7890:575..2064Choristocarpus tenellus KU2346CDSC-tenellus_contig7890 576..2064 -
1680790067.301151-CDS-C-tenellus_contig7890:2227..23951680790067.301151-CDS-C-tenellus_contig7890:2227..2395Choristocarpus tenellus KU2346CDSC-tenellus_contig7890 2228..2395 -
1680790067.3105848-CDS-C-tenellus_contig7890:2746..30211680790067.3105848-CDS-C-tenellus_contig7890:2746..3021Choristocarpus tenellus KU2346CDSC-tenellus_contig7890 2747..3021 -
1680790067.3224642-CDS-C-tenellus_contig7890:3265..36521680790067.3224642-CDS-C-tenellus_contig7890:3265..3652Choristocarpus tenellus KU2346CDSC-tenellus_contig7890 3266..3652 -
1680790067.3321471-CDS-C-tenellus_contig7890:3761..38121680790067.3321471-CDS-C-tenellus_contig7890:3761..3812Choristocarpus tenellus KU2346CDSC-tenellus_contig7890 3762..3812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7890.1.3

>prot_C-tenellus_contig7890.1.3 ID=prot_C-tenellus_contig7890.1.3|Name=mRNA_C-tenellus_contig7890.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=790bp
MIDLCRPIPLDILSNKEVWYDEACQQLVVRDGNFYLSVSLKEGGKDSPRI
NLGGAGREVLLARFSLGNRALLALQLNSTTVEVVDVRDGVDDVGVVPGSG
SRKVWSIECKHPNVNSILSGGVIWSEHGGNSQDLVLVTRIGLELHKISAK
RDQCKLSHALICDSVQNFWYEPVQRLLLLGTGASGNHMRGYWLCFEAPDR
LRLALPKPESVPNFKIILPAGREVLGKEHASLLCIHGRVYCVCVNEIAGL
SHLLLLERGMTKVELKHTVRMPFWSPPICSVVDNLLCLHFPESEVSVAYD
IHGAVNPPSRGGHWSGGRTILGPGLVQAWHEPVSPARPIGIANDALLPST
DLLPSVNPSEAVWSKTVGTASVSASTDAAMASPLPMLSLMRGDDVTAKKV
RVEQSMRRGGPGLFLGGGGWRLLLPCWVVNVEESTVWELCLDLTSVVVGG
AGGVSDDGRMMNFLRRRGGEVRGGGRKTGDAACSRFHIGKRALSVDDGVL
HVPFSTASKSGSSLEDQELLGSTPSSAAIADGAQGKKCALAPMPLGMVVS
YENVGKLSPFSFSLLGSGRRAKHGSPELTKLLILQKLQGLVAGRPSLPKI
STIFHSIVEPYARGVAAAKAKATMKVSFPTEDSGSSNSWGVGNTSRGGQH
ASGNGVGSKGGGEDRVGDDWNEQFWQAWTGSRESKEPNCLQEEHSEGLLC
EVMESIMRGRRGADVSTPGVGYDNFSVGEGGKVEALSVRDVRCPQGEVIL
LQSEIFVGVFLRLLGSNGEDAVRTDLSYVASVAVEFMLR*
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mRNA from alignment at C-tenellus_contig7890:16..3817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7890.1.3 ID=mRNA_C-tenellus_contig7890.1.3|Name=mRNA_C-tenellus_contig7890.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3802bp|location=Sequence derived from alignment at C-tenellus_contig7890:16..3817- (Choristocarpus tenellus KU2346)
GTCCGATGATCGATCTATGCCGGCCAATTCCACTAGATATCTTGAGTAAC AAAGAGGTGAGAGTTTGAATCATTAGACATTCCTCTTTGTTATCCCTTCA TTATCACAAGAGACATAGCTCGAGACAGCACTCTCTCTTAACCCCCTCCC CTCACTTCTTAGAAGGTGTGGTACGATGAAGCGTGCCAGCAACTGGTAGT CCGGGACGGCAATTTCTACCTCTCAGTTAGTCTGAAAGAGGGTGGTAAAG ATTCTCCTCGGATAAATCTTGGGGGTGCGGGGAGGGAGGTCCTTCTGGCT CGCTTCTCTCTCGGGAATAGAGCGCTTCTTGCCCTGCAGCTGAACTCTAC GACAGTGGAAGTGGTAGATGTCCGTGACGGTGTTGACGATGTTGGTGTTG TCCCTGGAAGTGGAAGCAGAAAGGTCTGGTCCATAGAGTGCAAGCACCCA AATGTAAACTCCATCCTTTCTGGGGGCGTCATTTGGTCTGAACACGGCGG GAACTCGCAGGACCTGGTACTTGTTACGCGGATTGGGCTCGAGCTGCATA AGGTCGGTCGATCGAAACCCCCAAGATCCCACTTTATGCATGTCATTGTG GGAATATTAATGTTAGGGCAACTACCTCTTATTCATCACAACTCCAAAAT GTCCCACTCCCCGTCTCTTGGCCTTGAATTTTTGTCACATCTCGAGAGAG CTTCCCTGCTTTATCTCACAGAACAGTGATCACAACCCACGGATACTACG CTTCCCACGCCCTTCCCCTGCTCTCCCATCCTCTGGAATAAAACAGATTT CGGCAAAACGTGACCAGTGCAAACTCTCACACGCGTTGATATGCGACTCG GTTCAAAACTTTTGGTACGAACCCGTTCAACGTCTACTGCTTCTTGGCAC AGGAGCCAGCGGTAACCACATGCGCGGGTACTGGCTATGCTTTGAGGCTC CTGACCGGCTGAGGCTGGCACTGCCAAAACCTGAAAGCGTTCCCAACTTC AAGATTATTTTGCCGGCTGGTCGGGAAGTTCTCGGCAAGGAACACGCAAG CCTCCTTTGCATCCATGGCAGGTGGGGGAGAGAGCACCTGACTATCACCT GTTGGTAGAAAAAGGTAAGGAGAGGATGGTGAGGGTTTCAATCCTCCCAC TTCTTGTATATCCTGCCTCGCTGTAGATGTGCCCTTGTGCGGTCCAGCCT GAGGCATGTTGAGGGTGGAAGGTGAGCTGCAAAGTAGAAAAGTGTTATGA CCAAAATACCACATCATAAAGATCAGCCAGATTTCACTGGACTCTGAATG TGTAGGATGATGGGAGCCGAGATTGCCCTGTGAGTAATTAACTTGCTCAA TGTACTTGCAATAGTGGTCTTCTCAGTGCCACCTTTTTTCTCAAACCACT TTGTCATTTGACTAACTGACAGGGTCTACTGTGTGTGTGTTAATGAGATT GCTGGCCTTTCTCACCTGCTTCTACTGGAACGTGGCATGACCAAGGTAGA GCTCAAACACACTGTGCGTATGCCCTTCTGGAGCCCCCCCATCTGCAGTG TTGTGGACAATCTTCTGTGCTTGCACTTCCCTGAGTCTGAGTGAGTGGTA TGAGCACCAAGGCAGAGGCTAGGTGGGAGGGATCTATTATACTTGGTGTG GTAAGACTTGTTTGAGCAAGTCCAGTGTAAAGTTCAAGGAAGTTCCATCC CTCAAACCCCCCTCCAACACCCTACCCTGACTGGTTTTTGTTCTGTCTTG CAGGGTTAGTGTTGCTTACGATATTCATGGTGCTGTCAATCCTCCATCCC GAGGAGGACATTGGAGTGGAGGGAGGACAATCTTGGGACCTGGCCTTGTA CAAGCTTGGCATGAGCCTGTCTCCCCTGCACGGCCTATTGGTATAGCAAA TGATGCATTGCTACCTTCGACAGATTTACTTCCATCTGTCAACCCATCCG AAGCCGTCTGGTCAAAGACAGTGGGAACTGCATCTGTCTCTGCATCAACG GATGCAGCAATGGCTTCACCCTTGCCAATGCTATCCCTCATGCGAGGGGA TGACGTTACAGCAAAGAAGGTCAGGGTGGAGCAAAGCATGAGGAGGGGAG GTCCTGGGTTATTCCTTGGAGGAGGCGGGTGGAGGCTGTTGCTTCCGTGC TGGGTGGTGAATGTAGAGGAGAGTACAGTGTGGGAGCTATGCTTGGACCT CACCTCTGTTGTTGTTGGAGGAGCTGGGGGTGTATCAGATGATGGCCGGA TGATGAACTTTTTACGCAGACGTGGGGGTGAGGTTAGGGGCGGAGGGAGG AAAACAGGAGATGCAGCCTGCAGCAGGTTCCATATCGGAAAGCGAGCACT GAGCGTAGATGATGGAGTGTTGCATGTTCCTTTTTCTACTGCCTCAAAAA GCGGTTCTTCCCTGGAGGATCAAGAGCTGCTTGGATCTACACCTTCATCT GCTGCGATCGCAGATGGTGCACAAGGAAAAAAATGTGCTTTGGCACCAAT GCCTTTGGGGATGGTGGTGTCATATGAGAATGTAGGGAAATTGTCACCAT TTTCTTTTTCCCTGTTGGGCAGTGGGAGGAGAGCAAAGCATGGATCTCCT GAGCTCACCAAGTTGCTGATCCTACAAAAACTGCAGGGACTGGTTGCTGG ACGCCCATCCCTCCCTAAAATATCAACAATTTTCCATTCAATAGTGGAAC CCTACGCCCGAGGTGTGGCTGCTGCCAAAGCCAAAGCCACAATGAAAGTG TCATTCCCCACAGAGGATAGTGGAAGCTCTAACAGTTGGGGGGTGGGGAA TACTAGCAGGGGAGGTCAGCATGCCAGTGGCAACGGGGTGGGGAGTAAAG GTGGTGGCGAGGACAGGGTTGGGGATGACTGGAATGAACAGTTTTGGCAA GCATGGACAGGCAGTAGGGAGAGCAAGGAACCCAACTGTCTTCAGGAAGA GCACTCTGAGGGACTTCTCTGCGAGGTGATGGAGTCCATCATGAGGGGCA GAAGAGGGGCAGATGTATCTACCCCGGGAGTTGGGTATGACAATTTCAGT GTGGGGGAGGGGGGAAAAGTCGAGGCTCTCAGTGTTCGTGATGTTCGTTG CCCTCAAGGGGAGGTGATTCTGCTACAGAGCGAGATTTTTGTAGGTGTTT TTCTACGCCTGTTGGGAAGCAATGGAGAGGACGCTGTCAGGACAGACCTG AGCTATGTGGCAAGTGTGGCAGTGGAGTTCATGCTCAGGTAGGTGGAGCC CCAGAGCTGCACCAGGACCACAGCACAAGGATTTAGTTATAGTTACACTG TTGGTGTGCTGGAAACAGGTTTCTGTTCAGGGAATTTGGTGTGCTTCCCT GTCCTTCAATCACCGTTCGCCTCTCCCTTCGTTGGTGCATGAATTGACAT CTCTTTTCTCCACCTTCAGGGGATGAGCGACCCGCCTTCAGTTGTGATTT CACGATTTATATTGCGTAGGAGAATTCGGCACAAAAAAAAAAAAATCTGT ATCCAAGTACACGGGGGGGGAAAAAAAAAAAACGCTCCTTTCGTTTTTGT CGCGCTGTGATGAATGGAGCAATGAAGTGGTGGATTGTTTCTGCACACGC AAGGGGTACCTACTTTGAGATACACCGTTGGCAGTGTTCATCCGTAGCGA CTGAGCAACTCATGGTGTTGTCCTCTTCCCACCTTCACATTTTCGAAAAA GCTGTTCGTGTGAAGCATGACCCTTCCTCCTACACTCTGATCCTGTCGTC ACCCACCGATCGTCCCCTATCATGCCACCCTCCCCGAGGCAATGATCCAT AT
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Coding sequence (CDS) from alignment at C-tenellus_contig7890:16..3817-

>mRNA_C-tenellus_contig7890.1.3 ID=mRNA_C-tenellus_contig7890.1.3|Name=mRNA_C-tenellus_contig7890.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=2370bp|location=Sequence derived from alignment at C-tenellus_contig7890:16..3817- (Choristocarpus tenellus KU2346)
ATGATCGATCTATGCCGGCCAATTCCACTAGATATCTTGAGTAACAAAGA
GGTGTGGTACGATGAAGCGTGCCAGCAACTGGTAGTCCGGGACGGCAATT
TCTACCTCTCAGTTAGTCTGAAAGAGGGTGGTAAAGATTCTCCTCGGATA
AATCTTGGGGGTGCGGGGAGGGAGGTCCTTCTGGCTCGCTTCTCTCTCGG
GAATAGAGCGCTTCTTGCCCTGCAGCTGAACTCTACGACAGTGGAAGTGG
TAGATGTCCGTGACGGTGTTGACGATGTTGGTGTTGTCCCTGGAAGTGGA
AGCAGAAAGGTCTGGTCCATAGAGTGCAAGCACCCAAATGTAAACTCCAT
CCTTTCTGGGGGCGTCATTTGGTCTGAACACGGCGGGAACTCGCAGGACC
TGGTACTTGTTACGCGGATTGGGCTCGAGCTGCATAAGATTTCGGCAAAA
CGTGACCAGTGCAAACTCTCACACGCGTTGATATGCGACTCGGTTCAAAA
CTTTTGGTACGAACCCGTTCAACGTCTACTGCTTCTTGGCACAGGAGCCA
GCGGTAACCACATGCGCGGGTACTGGCTATGCTTTGAGGCTCCTGACCGG
CTGAGGCTGGCACTGCCAAAACCTGAAAGCGTTCCCAACTTCAAGATTAT
TTTGCCGGCTGGTCGGGAAGTTCTCGGCAAGGAACACGCAAGCCTCCTTT
GCATCCATGGCAGGGTCTACTGTGTGTGTGTTAATGAGATTGCTGGCCTT
TCTCACCTGCTTCTACTGGAACGTGGCATGACCAAGGTAGAGCTCAAACA
CACTGTGCGTATGCCCTTCTGGAGCCCCCCCATCTGCAGTGTTGTGGACA
ATCTTCTGTGCTTGCACTTCCCTGAGTCTGAGGTTAGTGTTGCTTACGAT
ATTCATGGTGCTGTCAATCCTCCATCCCGAGGAGGACATTGGAGTGGAGG
GAGGACAATCTTGGGACCTGGCCTTGTACAAGCTTGGCATGAGCCTGTCT
CCCCTGCACGGCCTATTGGTATAGCAAATGATGCATTGCTACCTTCGACA
GATTTACTTCCATCTGTCAACCCATCCGAAGCCGTCTGGTCAAAGACAGT
GGGAACTGCATCTGTCTCTGCATCAACGGATGCAGCAATGGCTTCACCCT
TGCCAATGCTATCCCTCATGCGAGGGGATGACGTTACAGCAAAGAAGGTC
AGGGTGGAGCAAAGCATGAGGAGGGGAGGTCCTGGGTTATTCCTTGGAGG
AGGCGGGTGGAGGCTGTTGCTTCCGTGCTGGGTGGTGAATGTAGAGGAGA
GTACAGTGTGGGAGCTATGCTTGGACCTCACCTCTGTTGTTGTTGGAGGA
GCTGGGGGTGTATCAGATGATGGCCGGATGATGAACTTTTTACGCAGACG
TGGGGGTGAGGTTAGGGGCGGAGGGAGGAAAACAGGAGATGCAGCCTGCA
GCAGGTTCCATATCGGAAAGCGAGCACTGAGCGTAGATGATGGAGTGTTG
CATGTTCCTTTTTCTACTGCCTCAAAAAGCGGTTCTTCCCTGGAGGATCA
AGAGCTGCTTGGATCTACACCTTCATCTGCTGCGATCGCAGATGGTGCAC
AAGGAAAAAAATGTGCTTTGGCACCAATGCCTTTGGGGATGGTGGTGTCA
TATGAGAATGTAGGGAAATTGTCACCATTTTCTTTTTCCCTGTTGGGCAG
TGGGAGGAGAGCAAAGCATGGATCTCCTGAGCTCACCAAGTTGCTGATCC
TACAAAAACTGCAGGGACTGGTTGCTGGACGCCCATCCCTCCCTAAAATA
TCAACAATTTTCCATTCAATAGTGGAACCCTACGCCCGAGGTGTGGCTGC
TGCCAAAGCCAAAGCCACAATGAAAGTGTCATTCCCCACAGAGGATAGTG
GAAGCTCTAACAGTTGGGGGGTGGGGAATACTAGCAGGGGAGGTCAGCAT
GCCAGTGGCAACGGGGTGGGGAGTAAAGGTGGTGGCGAGGACAGGGTTGG
GGATGACTGGAATGAACAGTTTTGGCAAGCATGGACAGGCAGTAGGGAGA
GCAAGGAACCCAACTGTCTTCAGGAAGAGCACTCTGAGGGACTTCTCTGC
GAGGTGATGGAGTCCATCATGAGGGGCAGAAGAGGGGCAGATGTATCTAC
CCCGGGAGTTGGGTATGACAATTTCAGTGTGGGGGAGGGGGGAAAAGTCG
AGGCTCTCAGTGTTCGTGATGTTCGTTGCCCTCAAGGGGAGGTGATTCTG
CTACAGAGCGAGATTTTTGTAGGTGTTTTTCTACGCCTGTTGGGAAGCAA
TGGAGAGGACGCTGTCAGGACAGACCTGAGCTATGTGGCAAGTGTGGCAG
TGGAGTTCATGCTCAGGTAG
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