mRNA_C-tenellus_contig7887.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7887.2.1
Unique NamemRNA_C-tenellus_contig7887.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A6H5KY98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY98_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.410e-56
Identity = 100/161 (62.11%), Postives = 126/161 (78.26%), Query Frame = 2
Query:   77 PSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPR 559
            P ED PH+ W+  L P+AL+SWSRPRF VS+IT+ RP SL RLL SLQ + LFG+E++VD Y ES++D+ETL + +  +  WG RG+V  HFRVL+GGLIRAVTES++P+ RH H  LLEDDIEVSP F+AWAKW TLTYQYG   +F  ++YGVSLY+PR
Sbjct:  759 PEEDVPHSLWLPRLAPAALSSWSRPRFSVSIITNDRPRSLSRLLESLQRSRLFGDEMAVDFYIESSADDETLGVAERFSSVWGDRGQVQTHFRVLKGGLIRAVTESFFPSDRHHHAFLLEDDIEVSPHFYAWAKWATLTYQYGAPSDFMENMYGVSLYTPR 919          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A836CAV5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV5_9STRA)

HSP 1 Score: 202 bits (513), Expect = 3.480e-52
Identity = 100/181 (55.25%), Postives = 127/181 (70.17%), Query Frame = 2
Query:   23 AARLACGRRKAPTAFISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKR--PWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPR 559
            A R AC + +  +A I MP +D   A W +TL+P ALASW  P+F VSVIT+ R  PWSL RLL SL+ A LFG+ V V    +S++D+ETL L+ + +  WG RG+     R L+ GLIRAVTESYYP  +H H +LLEDDIEVSP F+AWAK+TTLTYQYG   +F  D+YG+SLY+PR
Sbjct:  289 AIRDACAQHQGASAPILMPPQDVASAAWTATLEPVALASWHIPKFSVSVITNDRREPWSLLRLLSSLRGAALFGDAVPVSFNVDSSADDETLQLVQEFSGLWGKRGRTSTSLRTLKAGLIRAVTESYYPTDKHHHCVLLEDDIEVSPLFYAWAKYTTLTYQYGAPADFEPDMYGISLYTPR 469          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: D8LGV6_ECTSI (Glycosyl transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 5.320e-48
Identity = 92/170 (54.12%), Postives = 123/170 (72.35%), Query Frame = 2
Query:   50 KAPTAFISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPR 559
            KA  A++ +P ED P++ W++ L P+AL+SWSRPRF VS+IT+ RP SL RLL SLQ + LFG+E++VD Y ES++D++TL + +  +  WG RG+V  HFRVL+GGLIRAVTES++P+ R        DDI VSP F+AW KW  LTYQYG   +F  ++YGVSL  PR
Sbjct:  627 KAEIAYVLLPEEDVPNSLWLARLAPTALSSWSRPRFSVSIITNDRPRSLSRLLDSLQRSRLFGDEMAVDFYIESSADDDTLGVAERFSSVWGDRGQVQTHFRVLKGGLIRAVTESFFPSDR--------DDIGVSPHFYAWGKWAPLTYQYGAPSDFMENMYGVSLSIPR 788          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A8H2X1N9_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2X1N9_9AGAM)

HSP 1 Score: 157 bits (398), Expect = 5.940e-38
Identity = 78/181 (43.09%), Postives = 111/181 (61.33%), Query Frame = 2
Query:   44 RRKAPTAFISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHF----RVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPRYTYLH 574
            RR   TA I +   D   ++W+S L P    +W +P   ++VITH RPWSLRRLL S++ A+ FG+ V+V I  E  SD+ET  + ++ A      G +  H     R++  GL+ AV ES+YP G H +G++LEDD+EVSP F+AW K+  L Y+YG   +  + LYG+SLY P+ T LH
Sbjct:   71 RRVCATAAIYLHDRDLESSEWLSMLTPEEWQAWDKPAIELAVITHDRPWSLRRLLESVKKANYFGDTVNVVINLEQTSDQETRQIAEEFAM-----GPIGSHVSVRHRIVYAGLMTAVVESWYPHGNHSYGVMLEDDVEVSPLFYAWIKFCILRYRYGTPLSNTSQLYGISLYQPKVTELH 246          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: UPI001B8785AA (uncharacterized protein n=1 Tax=Suillus clintonianus TaxID=1904413 RepID=UPI001B8785AA)

HSP 1 Score: 161 bits (407), Expect = 6.760e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 2
Query:   59 TAFISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPR 559
            T  I +P  D P++DWI +L    L +W+ P   +SVIT  RP+SL+RLL+SL  A  FGE + + I  E  +D ETL ++ D   +W   G V  H+RV+ GGL+ AV ES+YP   H +G+LLEDDIEVSP FFAW K T L Y+YG  +N +  ++G+SLY  +
Sbjct:  353 TTLIRLPRADIPYSDWIGSLTLRELRNWNVPEITISVITDHRPYSLQRLLMSLARARYFGERIGLRINLEQTADLETLRVLQDF--EWR-HGDVFVHYRVIHGGLLPAVVESWYPNSNHSYGLLLEDDIEVSPLFFAWIKMTVLRYRYGEPENVSPSVFGISLYQQK 516          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A166B732_9AGAM (Uncharacterized protein n=1 Tax=Peniophora sp. CONT TaxID=1314672 RepID=A0A166B732_9AGAM)

HSP 1 Score: 160 bits (404), Expect = 1.050e-37
Identity = 80/165 (48.48%), Postives = 106/165 (64.24%), Query Frame = 2
Query:   65 FISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPR 559
            FI++P ED  + DW+STL      SW  P   +S+IT  RP SL RL  SL  A  FG+ VS+ I  + A+D ETL+L+  L+ +W   G V  H RV+ GGL+ AV ES+YP+    +GILLEDD+EVSP F+AWAK   L Y+Y  E   A +L+G+SLYSP+
Sbjct:  304 FINIPREDLLYCDWMSTLSLQEWQSWHTPHIELSIITDSRPTSLARLFHSLMAARYFGDSVSLRINIDQAADAETLALVQRLSAEW-THGSVFVHHRVIAGGLLPAVVESWYPSTDDSYGILLEDDVEVSPLFYAWAKHALLRYRYSSERTMANNLFGISLYSPK 467          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A0D0AJF1_9AGAM (Uncharacterized protein n=2 Tax=Suillus TaxID=5379 RepID=A0A0D0AJF1_9AGAM)

HSP 1 Score: 159 bits (402), Expect = 4.060e-37
Identity = 79/167 (47.31%), Postives = 105/167 (62.87%), Query Frame = 2
Query:   59 TAFISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPR 559
            T  I +P  D PH+DWI +L    L +W+ P   +SVIT  RP SL+RLL SL  A  FGE V + I  E  +D ETL ++ D   +W  RG V+ H R++ GGL+ AV ES+YP     +G+LLEDDIEVSP FFAW K T L Y+YG  +N +  ++G+SLY  +
Sbjct:  410 TTLIRLPRADIPHSDWIGSLTLRELCNWNVPEITISVITDHRPHSLQRLLTSLTHARYFGERVGLRINLEQTADVETLRVVQDF--EWP-RGDVYIHHRIIHGGLLPAVVESWYPNSNDSYGLLLEDDIEVSPLFFAWIKMTVLRYRYGGSENISPSVFGISLYQQK 573          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A5E3XNF0_9AGAM (Uncharacterized protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3XNF0_9AGAM)

HSP 1 Score: 157 bits (398), Expect = 1.100e-36
Identity = 79/164 (48.17%), Postives = 107/164 (65.24%), Query Frame = 2
Query:   68 ISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPR 559
            IS+  ED P++DW+ TL      +W+ P   +S+IT  RP SL RL  SL  A  +G+ VS+ I  E A+D ETL+LI+  + +W   G V  H RV+ GGL+ AV ES+YP+    +GILLEDD+EVSP F+AWAK   L Y+YG E   A +L+G+SLYSP+
Sbjct:  387 ISILREDLPYSDWMCTLSLKEWQNWNTPHVELSIITDSRPTSLERLFNSLLAARYYGDSVSLRINVEQAADAETLALIERYSAQW-IHGSVFVHHRVVAGGLLPAVVESWYPSSNDSYGILLEDDVEVSPLFYAWAKHALLRYRYGDERMKATNLFGISLYSPK 549          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A8H3AUY3_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AUY3_9AGAM)

HSP 1 Score: 154 bits (388), Expect = 1.290e-36
Identity = 75/176 (42.61%), Postives = 107/176 (60.80%), Query Frame = 2
Query:   47 RKAPTAFISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPRYTYLH 574
            R   TA I +   D   ++W+S L      +W +P   ++VITH RPWSLRRLL S++ AH FG+ V+V I  E  SD+ET  + ++   +    G V    R++  GL+ AV ES+YP G H +G++LEDD+E+SP F+AW K+  L Y+YG     A+ LYG+SLY P+   LH
Sbjct:   70 RVCATAAIYLHDRDLESSEWLSMLTAEEWRAWDKPAIELAVITHDRPWSLRRLLDSVKQAHYFGDTVNVVINLEQTSDQETRQIAEEFTME-PTGGHVFVRHRIVYAGLMTAVVESWYPHGNHSYGVMLEDDVELSPLFYAWIKFCILRYRYGTPLRDASQLYGISLYQPKVAELH 244          
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Match: A0A4Q9MVX8_9APHY (Uncharacterized protein n=3 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9MVX8_9APHY)

HSP 1 Score: 155 bits (393), Expect = 4.510e-36
Identity = 78/182 (42.86%), Postives = 113/182 (62.09%), Query Frame = 2
Query:   29 RLACGRRKAPTAFISMPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQLAHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGLIRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFAADLYGVSLYSPRYTYLH 574
            R +    +  T+ + +P ED P+ DW+S +D     +W  P+  +SVIT  RP+SL+RLL SL  A  FG++V + I  E  +D  TL L++D   +W   G V  H RV   GL+ AV ES+YP G   +G+LLEDD+EVSP F+AWAK + L Y+YG+ ++ + +LYG+SLY  +   LH
Sbjct:  350 RFSQNNVRGRTSVVRIPEEDLPYCDWMSAVDLEGWKNWHVPQIELSVITDHRPYSLQRLLSSLANARYFGDQVDLRINIEQTADTGTLQLVND--HRWE-HGSVFYHHRVAHAGLMAAVVESWYPKGNDTYGLLLEDDVEVSPLFYAWAKLSLLRYRYGQAESRSPNLYGISLYQQKNIELH 528          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7887.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY98_9PHAE1.410e-5662.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAV5_9STRA3.480e-5255.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LGV6_ECTSI5.320e-4854.12Glycosyl transferase family 2 protein n=1 Tax=Ecto... [more]
A0A8H2X1N9_9AGAM5.940e-3843.09Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
UPI001B8785AA6.760e-3846.71uncharacterized protein n=1 Tax=Suillus clintonian... [more]
A0A166B732_9AGAM1.050e-3748.48Uncharacterized protein n=1 Tax=Peniophora sp. CON... [more]
A0A0D0AJF1_9AGAM4.060e-3747.31Uncharacterized protein n=2 Tax=Suillus TaxID=5379... [more]
A0A5E3XNF0_9AGAM1.100e-3648.17Uncharacterized protein n=1 Tax=Peniophora sp. CBM... [more]
A0A8H3AUY3_9AGAM1.290e-3642.61Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A4Q9MVX8_9APHY4.510e-3642.86Uncharacterized protein n=3 Tax=Dichomitus squalen... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7887contigC-tenellus_contig7887:1779..6568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog40492.XP_007304368.1
Model size2070
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.95e-38
EggNOG OGs2CMCB@1|root,2QPYF@2759|Eukaryota,38B9U@33154|Opisthokonta,3NZBG@4751|Fungi,3UYH2@5204|Basidiomycota,224J7@155619|Agaricomycetes,3H30G@355688|Agaricomycetes incertae sedis
Cds size507
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7887.2.1prot_C-tenellus_contig7887.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7887 3269..5556 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.8363307-UTR-C-tenellus_contig7887:1778..32681680790066.8363307-UTR-C-tenellus_contig7887:1778..3268Choristocarpus tenellus KU2346UTRC-tenellus_contig7887 1779..3268 -
1680790066.889105-UTR-C-tenellus_contig7887:5556..55771680790066.889105-UTR-C-tenellus_contig7887:5556..5577Choristocarpus tenellus KU2346UTRC-tenellus_contig7887 5557..5577 -
1680790066.8982437-UTR-C-tenellus_contig7887:6516..65681680790066.8982437-UTR-C-tenellus_contig7887:6516..6568Choristocarpus tenellus KU2346UTRC-tenellus_contig7887 6517..6568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.8541205-CDS-C-tenellus_contig7887:3268..34371680790066.8541205-CDS-C-tenellus_contig7887:3268..3437Choristocarpus tenellus KU2346CDSC-tenellus_contig7887 3269..3437 -
1680790066.8650088-CDS-C-tenellus_contig7887:4512..46791680790066.8650088-CDS-C-tenellus_contig7887:4512..4679Choristocarpus tenellus KU2346CDSC-tenellus_contig7887 4513..4679 -
1680790066.8774467-CDS-C-tenellus_contig7887:5385..55561680790066.8774467-CDS-C-tenellus_contig7887:5385..5556Choristocarpus tenellus KU2346CDSC-tenellus_contig7887 5386..5556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7887.2.1

>prot_C-tenellus_contig7887.2.1 ID=prot_C-tenellus_contig7887.2.1|Name=mRNA_C-tenellus_contig7887.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=169bp
MPSEDFPHADWISTLDPSALASWSRPRFGVSVITHKRPWSLRRLLLSLQL
AHLFGEEVSVDIYAESASDEETLSLIDDLAQKWGCRGKVHGHFRVLRGGL
IRAVTESYYPAGRHDHGILLEDDIEVSPSFFAWAKWTTLTYQYGREDNFA
ADLYGVSLYSPRYTYLHT*
back to top

mRNA from alignment at C-tenellus_contig7887:1779..6568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7887.2.1 ID=mRNA_C-tenellus_contig7887.2.1|Name=mRNA_C-tenellus_contig7887.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4790bp|location=Sequence derived from alignment at C-tenellus_contig7887:1779..6568- (Choristocarpus tenellus KU2346)
AGGGGACTCTTTGGAGGGACATGCAGCACGACTGGCATGTGGGAGGAGGA AGGTGGGTGGTTTCTTTTATTTTATGTAGACAGAGTGTGAAATCTGTGGA TTAAGTACAATGAAGAAAGCAGTCGTTGTCCATAGTCTGTAGTAGTTGTC TGTATTAGTTGTCCATAGTCTGTATTAGTTGTCATTTGTTCAACATCGAG ATTTTCCATCCTGGTGGAACATGTATGTGTACCTCAATATAATATTTTTA TTTTACATGATTTTATGTTTTATTTTTTGTTCTGCTTGGTGGGTTGGTTG ATATTTGAGAGTAGTTTTAGTGTCAGCATCTGTATGTTTTTGTTTCAGTA GGTGTGTTACGTGTATGCTTGTCTACTGTGCTGTGTAATGAAAAATAGAT GATTATCAAAATAAAATATATTGGCAACAGTACATATCATTGGTATTTTA TTAGCTCTCTCTCTCTCTCTACGACACTTCTTTTTGAGATGTGAGCAGGT TCTGTGTGATGTAACTTGACTCCTTTCTTAATAGTAGTAGTAGTAGTATT GTTACTATTGTTATTTTCATTATTATTTTTAGCAGTAGTGATAGTGATAC TGATAGTGATAATAGTAATGAAGTGAATGAGAAAGGTGGTGCTGATTAAC AATACTGTTTCTGCACATTAAATATTTTGACAGTACATAGTATGTGATAT GTACACATAACACATACCTCCTATTGTGGAATATCACACAGACAAGTGCA GTTTCAAATATGAATTGTACTTTTTGTTTGCACTATTTTTTTTCAATTCT ATCATTGTAAACAAAGTATATAGTGTGTAGCATTTCACATTTTTCTGTAT ACCTTATCTTGTCAAAAATGACACAAAATTGTTGATTGTTGTGATTATGT TACCTCTGTATAGTGGAAAATAACCACACGTGCATATATACATGTATATA CATACAACACACATACATACACACTCAAATAAATTAAACAGGCACCTACT GCATTCATCAGCATGCCAAGTGAGGACTTCCCCCATGCAGACTGGATATC TACCTTGGACCCTTCTGCTCTGGCAAGCTGGAGTCGTCCAAGATTTGGAG TCTCTGTAATAACACATAAGCGTCCTTGGTCTCTGAGGCGGCTGCTGTTG TCCCTCCAGTTAGCCCATCTGTTTGGGGAAGAGGTGAAAATGACCATTGG AGATGTTGTGTTATGTGTACAACATAGGAAGAGCTTGTGTGCGAAAGGCT ATTTGTATGCTTTTGAGGGGGGTTGGGTGTGGTGTTGTACTATTTGTAGG GTATAGATCTTTTTATCATGTTATATCTTATCTTTATATGATAATAGAAG TACTAATTGCAGGAGTTATGGCAGAGGGACTTTTTACTAGTTGTAGTTTG TCTTGCTTATAAGGAGAGGGGGACGTTTGTATTCTTATATTTTATCTTAC TTATAAAGAGAGACATTCATAACAAGAGTTATGACAGGGGGACATTTGTA TTTTATGTTTTATCTTACTGGTAAAGAGAGACATTTATAACAAGAGTTAT GACAGGGGGACTTTAAAACAATACCAAAGATGTAGAACTATACCAATATA ATACCAATGACAGATGTGGGTGTGACTTTTGAGGGGGTTAGGGATGTGTA TGTATTACGAACTAATTCAGTAGAATAAAAAAAGAAATTAATTGTGCCTT GAGTAAAAGAAGGAAGATTTATTAAACATACACAAAACACTACCTTAATT AATTAATACCATATGCTACTAAAATATGAACTCTAGCCCTAATCCAAACC CCCCTCCCCCCTCCCCCCTCCCCCCTCCCTCCCCCAACTCTTCGTTTTTT TCTGTTGTGCGACCCTAATTGGTAAACACACTATTCCAGGTGTCAGTTGA TATTTACGCCGAGAGCGCCTCCGACGAGGAAACCCTTTCCCTCATTGATG ACCTCGCCCAAAAGTGGGGGTGCAGGGGTAAAGTCCATGGACATTTCCGT GTGCTTCGGGGAGGGCTCATTAGGGCAGTTACAGAATCATACTACCCTGC TGGCAGGTATCACCTCACCGGCATTTTGTGTATGTGTGTGCTTGTGCTAG TGTGTATGTAACCTCTGCTTATCTTTTAATATATTTTTTGCATGTGATGA GCACTTTGAAAACATCGCTTTGAAAACATCTTTGAAAGCATCTTTGAAAG CATCTTGTAGACAAGGGATACTGCACGTTTAAAATCATAATTCATAAAAT AATAATGATAATATTGTAATAGTTTTGTGGGTGTCGGGACACACATCTTT TGGTTGATTTTTTTTTTCTACACATTTAAAAAAAAAATGTTATTGGATTA GTGCTGGTGCAGAACATTTTTATTCAAATATTAGTATTGATGTATTTGAA ATCGAGGTATTTTGAGGTCTCTAACATGTTACTGAGTGGTACGGGCTTGG TATGGATTATGGGTAAAACTATTTTTTTTAAATAGTAGTTCCAAAAAAAT ATGGGACGTGAACTCTTTGCAGGCGGCTGCAGTTGGTGAGATCGAGTCTC TCTTACTTTTTTTTATATATAATAATTTGGTCAAGATTTTTTTTATTTAT TGATCACAGATGTATCTCTAGTATCTAGTCTACCCACCGGTGATGCTTAG GGTTAGGGTTAGGGTTAGTGCTTTCTTTTGACCCACCGGTGCTTCCAATT TTTGAATGTCTAGAAGAAAAGTGTTTTTTGAAAATCTTGGCAGGATTGAT TCAAATATGTATTTATATCCATTTTTTTTCTTATAGGAGAGAAACAAACA AGATATATTAAAAATAATACCCCACTGTTAGGGTGTGCCTATTTTCTGAT CCAGAGTATATTTAACTAGTAGGAATGGGATGTGCACTAGCCTCCAATGA CTTTGTGCTGTAAACGTGTAATATTGTTTTATTATTATTAATGTTAATGT TAATGATTTATTATTATTAATGTTAATGTTTTAATATTATTAATGTTAAT GATGCTGATATTGTTTTAATATTGTAAAATATTATTATTAATATTGATTT GAAAAAATAATTTGAGCCAGTCAGCAGAGTACATTCACCGTAACCCTAAC CTGACAATGCCCCCCTGGTCTAACCCAACAGGCATGACCATGGTATTCTC TTGGAGGATGACATTGAGGTGTCTCCCAGCTTTTTTGCTTGGGCAAAGTG GACTACCTTGACATACCAGTATGGTAGGGAGGACAACTTTGCAGCAGACT TATATGGGGTTAGCCTCTACTCACCCAGGTATACTTACTTACATACATGA TGCATTTTATCGAGCCTTTATACTGAGGTTGCCCTAACCCCTCAAAATTG AAATGCCTGTACAGCCAATACTACAACCAGTGTGATCTTATCCTTACCCT GACACCATTTACTCTGACTAAATTATTTGGTGTTATTGTTATTATTATTA CTATTACTGTTGTGTAATCACCATCTTGGCATTGTATTAGTATTAAAAAA AATAGCATTGGTGTGATTGCCCCAAAGTTGAAGTGAGATTTTGATTCACT TATGTGGAACAAATATGCCTTTCCTTACTAATATAAAAACCTCAGAATAG CTCCGATCCATTATCCACCAGGTAGTCTGCATTCATTATTTCCTATACAA TGTCTCTCCCTGCATATATATATATCACTCCAAGACCTACCAATATATTT CTCACACACATGAAGACCACAGATATATTAGTGTATGCCATAGCTTAGAG CTGTTCTTATCACCAAGGTTTTTATTTCTCATTACTTAATTTGGCAGCAC AATATTATTATTATTGTTATCATGTAGTAAAAAATACATATTTTTGTAAA AACTGACTTTACAGTCCTGACTCTACCTCTGCATGTACAAGATGCATTTG TTCCTACTGCAGAGTTACCATTATTACTATTATTATTATTATTATAGACC TCTAGCTGTTTTTCCACAGATACATTTTTATCCAACACACTGATCATGGT CGAGTGCCAAGTGAACATACATTTATTTGTTTATTTTTATCCAAACGGGT TCGTGTGCCCCAGTCAATAAAATAAAATAAATATATACATATATATATGT AGAGAGAGATGCTCTCACTCAGTTACTATTAGAAGCTGTTTATTTTCATC AAAAAGTCAATGTTTATTTCGGATATGGCTCTTTTTTGTACCACGCCATC ATTTCCCTAACACCAATGTCCATAAATGTGTCCATAAATATAGGGTATAC CCTGTTCTGTGTGCCTTTCAGTTGAATGCCCCACCTGTTTGAGTCAGTTA CACAGCAGCACCCCTTTTGTGATCATTCTCACCCTAGTGCCTATTGGAAC TAACTGCCACTATAATTTGGTAACTATCTCGGTTTTGAAGGACTTTAATG TCAATTGGAGGCTGGTGTATATCCATATGGATCAGTTCAAATGTCTTTGT TGTGTGTCTCTAGTTCACAGATTCCAAGTTTGTTGCAGGAAAATCATCCC CTGTGAATCTGGACCCACTATAGCAGGTACTTTATGAATCTACACTGGTA ACTGGTAACTACTAGCTAAGGACTGGTACAATAGGATAGAAATATATATT ATTTTTTTCTCATTGCATTCCTTGAATTACTTTTTCAATAAAATACACCG GTGAATGGAGTCCTCAAACCCAGTTTTAACCTTTATCACCTCTCCATGTT TTAACCTTTTCTGTTCCAACTATCTCTCACTCTATTGCATCACATTTTTT TTTAATAGGTGCACGTATGTACCCCCCTCTGTCCCCCTTA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7887:1779..6568-

>mRNA_C-tenellus_contig7887.2.1 ID=mRNA_C-tenellus_contig7887.2.1|Name=mRNA_C-tenellus_contig7887.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=507bp|location=Sequence derived from alignment at C-tenellus_contig7887:1779..6568- (Choristocarpus tenellus KU2346)
ATGCCAAGTGAGGACTTCCCCCATGCAGACTGGATATCTACCTTGGACCC
TTCTGCTCTGGCAAGCTGGAGTCGTCCAAGATTTGGAGTCTCTGTAATAA
CACATAAGCGTCCTTGGTCTCTGAGGCGGCTGCTGTTGTCCCTCCAGTTA
GCCCATCTGTTTGGGGAAGAGGTGTCAGTTGATATTTACGCCGAGAGCGC
CTCCGACGAGGAAACCCTTTCCCTCATTGATGACCTCGCCCAAAAGTGGG
GGTGCAGGGGTAAAGTCCATGGACATTTCCGTGTGCTTCGGGGAGGGCTC
ATTAGGGCAGTTACAGAATCATACTACCCTGCTGGCAGGCATGACCATGG
TATTCTCTTGGAGGATGACATTGAGGTGTCTCCCAGCTTTTTTGCTTGGG
CAAAGTGGACTACCTTGACATACCAGTATGGTAGGGAGGACAACTTTGCA
GCAGACTTATATGGGGTTAGCCTCTACTCACCCAGGTATACTTACTTACA
TACATGA
back to top