mRNA_C-tenellus_contig7884.2.7 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7884.2.7
Unique NamemRNA_C-tenellus_contig7884.2.7
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: A0A835YRX0_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX0_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.680e-26
Identity = 99/315 (31.43%), Postives = 142/315 (45.08%), Query Frame = 3
Query:  885 DQVRTNVFAISALK-VSDDSSKIASLTHINVAVGLYPTAAMLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKGCQGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLTEVAEDAKSWQKALKETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLMWRQSKLIGTAMGLARAHDLIAR------LLAGTGDFAEAASHCEEAVRILEKKYSQG-DVELGQEMFKLAGLYFNAGLLSRCFG 1805
            ++V  N F ISA+   ++ +S    + H+ + V +Y   A +NHSCRP     F+G  + V AT+ I +G+P+TISYGPLA + P + +RR  L   Y F C C ACI              E ++A         S G  GE   S+ +  S+   + C  C  ++ P+ + ALL    E   +++ A                        HVE  R+         L WRQ      A+ +A  HD +AR       LA    F EAA HCE+++ IL  +   G   ELG+E  K AGLY  A +L  C G
Sbjct:   39 NRVLYNSFTISAVADTTEAASAFVDVEHVKLGVVVYLHGAAMNHSCRPTAAVHFEGTTLVVTATQAIAEGDPVTISYGPLAWRDP-LDRRRAHLLRRYCFVCCCVACI--------------EEEMAALKPLTDASSSGQSGE--ASQLRCGSRPRVLRCGVCSHSITPAASRALLVAAGEQQAAFKVAAAR--------------------GHVEDLRR--------VLAWRQRSSAPGALAVAETHDALARQVVVIAALAEHDQFDEAAMHCEQSITILTTRQGGGLSAELGREHLKCAGLYM-AEMLRACCG 307          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: A0A6H5L8Y3_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Y3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.580e-25
Identity = 77/173 (44.51%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSS--KIASLTHINVAVGLYPTAAMLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPAC--------------------------IDADRESSHASAS-SKEVDLAYTTTSLACRSKGCQGELCV 1319
            +V TN F IS+L+ SD  +   +  L H  VAVGLY  A+M+NHSCRPN LA F G EM VVATR I +GEP+TISYGPLASK+ S  +R+  L  +YFF C C AC                           D D+E     A+ SK  D A T       S GC G LCV
Sbjct:  370 KVSTNAFTISSLRCSDSRAGHNVRPLKHATVAVGLYLVASMINHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASKMSSTSERQAYLSRAYFFRCECIACHPLSEETATTPSRRSRGSEGGDERQLTDRDKEGKAIEATFSKRTDFACTEA----ESGGCPGTLCV 538          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: D7FV15_ECTSI (Set and mynd domain containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV15_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.970e-25
Identity = 61/107 (57.01%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSS--KIASLTHINVAVGLYPTAAMLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPAC 1202
            +V TN F +S+L+ SD  +   +  L H  VAVGLY  A+M+NHSCRPN LA F G EM VVATR I +GEP+TISYGPLASKI S  +R+  L  +YFF C C AC
Sbjct:  140 KVSTNAFTVSSLRCSDPPAGHNVRPLKHATVAVGLYLVASMMNHSCRPNALASFHGGEMRVVATRAIERGEPVTISYGPLASKISSASERQAYLSRAYFFRCECIAC 246          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: A0A8J9Z4M1_BRALA (SMYD4 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z4M1_BRALA)

HSP 1 Score: 103 bits (257), Expect = 5.660e-19
Identity = 94/340 (27.65%), Postives = 148/340 (43.53%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSSKIASLTHINVAVGLYPTAAMLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTL--QNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKGCQGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLTEVAEDAKSWQKALKETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLMWRQSKLIGTAMGLARAHDLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEMFKLAGLYFNAGLLSRCFGACQQAKGSLTV--CLQADD-PQLQELQDMEHC 1892
            Q+R N  AI+ L+  D  S +     + +A  ++PT A+LNHSCRPN    F G  + V A   I  GE L   YGP A ++    +R+  L  Q  YFF C C AC + D   +        VD+       A +   C     +  +K +            +N NP        E   D K+  K +++  +   A       +E + G               QCL+ +   L  +   +AR HD +AR  A +GD  ++  H ++++  +E ++    VEL  E+ KLA L FN   ++ C    ++A   LT+  C   D  P+ +EL+ M+ C
Sbjct:  581 QLRCNAQAITTLQEQDSVSLLED-KQVRLATAVFPTEALLNHSCRPNVFVSFQGKTLIVRAVSHIKTGEELLHCYGPHAGRMGRT-ERQAALHVQEQYFFSCRCDACQEEDNPDT--------VDMFS-----AYKCPTCSNAARLQDNKLVCTS---------LNCNPQ-------EDTNDIKTTSKKIQDLFVKSSALLDEGQVQEAVSG-------------LKQCLVLQWKILHPSNKDIARTHDALARCYATSGDCKKSVEHLKKSLSAVELQFGACSVELAHELHKLAQLQFNGQQVAECLDTIERA---LTIFGCHYGDHHPKSKELRAMKDC 873          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: A0A6P4ZFY6_BRABE (SET and MYND domain-containing protein 4 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZFY6_BRABE)

HSP 1 Score: 102 bits (253), Expect = 1.580e-18
Identity = 94/337 (27.89%), Postives = 143/337 (42.43%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSSKIASLTHINVAVGLYPTAAMLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKGCQGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLT-EVAEDAKSWQKALKETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLMWRQSKLIGTAMGLARAHDLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEMFKLAGLYFNAGLLSRCFGACQQAKGSLTVCLQADD-PQLQELQDMEHC 1892
            Q+R N  AIS L+  D  S +     + +A  ++PT A+LNHSCRPN    F G  + V A   I  GE L   YGP A ++    +R+  L   Y+F C C AC + +             D     ++  C    C     +  HK       + C     N          T E  +D      AL E   V++A S       G++                QCL+ +   L  +   +AR HD +AR  A TGD  ++  H ++++  +E ++    VEL  E+ KLA L FN   ++ C    ++A  S+  C   D  P+ +EL+ M+ C
Sbjct:  517 QLRCNTQAISTLQEQDSVSLLED-KQVRLATAVFPTEALLNHSCRPNVFVSFQGKTLIVRAVSHIKAGEELLHCYGPHAGRMGRT-ERQAALLEQYYFSCSCDACQEEE----------DNPDTVDIFSAYKC--PFCSNAAKLQDHK-------LTCTSTTCNTQADTDNIKTTSEKIQDLFIQSCALLEEGQVQEAVS-------GLK----------------QCLVLQWKILHPSNKDIARTHDALARCYATTGDCKKSVEHLKKSLSAVELQFGACSVELAHELHKLAQLQFNGQQVAECLDTIERAL-SIFGCHYGDHHPKTKELKAMKDC 808          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: A0A3B4D161_PYGNA (SET and MYND domain-containing protein 4 n=3 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4D161_PYGNA)

HSP 1 Score: 101 bits (252), Expect = 1.930e-18
Identity = 93/351 (26.50%), Postives = 149/351 (42.45%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSS-KIASLTHINVAVGLYPTAAMLNHSCRPNTLARFD-------------GNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKGCQGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLTEVAEDAKSWQKALKETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLM----WRQSKLIGTAMGLARAHDLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEMFKLAGLYFNAGLLSRCFGACQQAKGSLTVCLQADDPQLQELQDME 1886
            Q+R N  A++A++V +D    + S   + +A  ++P  ++LNHSC PNT   F              G  + +   + +  G+ L   YGP  S++  V QR+  L   YFFHC C  C               +++L   T +LA  S G +                  C +CG +L    A A +    +   ++Q  +  T+L  +  +          G  V+L     LD + + L        S L+ T        D  AR+ A  G++ +AASH + +V  +  ++ +  VELGQ++FKLA LYFN   +         A   L++       +LQELQ ME
Sbjct:  439 QLRCNAQAVTAVRVKEDGGLAVQSSGEVRIATAVFPVLSLLNHSCCPNTSVSFSLGLSSEAPVSSASGVAVTIRTCKDVAAGQELLHCYGPHCSRM-DVGQRQRLLLEQYFFHCHCEVC---------------KMELTAGTRTLATASHGLR------------------CGRCGSSLQ---ARAEVHVCPQSPCNYQ--ISNTELQGRIETLQQRL-----GRAVQLMENDGLDGALRVLQEAATQADSILMKTHPLQGELADATARVFAALGNWRQAASHLKRSVAAVRCQFGEDSVELGQQLFKLAQLYFNGRDMQSALSVIPSAHRLLSLHCDPHCEELQELQQME 745          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: C3ZQQ3_BRAFL (SET and MYND domain-containing protein 4 n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZQQ3_BRAFL)

HSP 1 Score: 98.2 bits (243), Expect = 2.770e-17
Identity = 90/338 (26.63%), Postives = 154/338 (45.56%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSSKIASLTHINVAVGLYPTAAMLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKGCQGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLTEVAEDAKSWQKALKETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLMWRQSKLIGTAMGLARAHDLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEMFKLAGLYFNAGLLSRCFGACQQAKGSLTV--CLQADD-PQLQELQDMEHC 1892
            Q+R N  AI+ L+  D  S +     + +A  ++PT A+LNHSCRPN    F G  + V A   I  GE L   YGP A ++    +R+  L+  YFF C C AC     +    + ++ ++  AY               +C +  K   K  ++ C     +              +D K+  K ++  DL  +++++       +E   ++     A+    QCL+ +   L  +   +AR HD +AR  A +GD  ++  H ++++  +E ++    VEL  E+ KLA L FN   ++ C    ++A   LT+  C   D  P+ +EL+ M+ C
Sbjct:  612 QLRCNAQAITTLQEQDSVSLLED-KQVRLATAVFPTEALLNHSCRPNVFVSFQGKTLIVRAVSHIKPGEELLHCYGPHAGRMV-YGERQAALKEQYFFSCSCDAC-----QEQVGNPNTVDMFSAYKCP------------VCNNAAKLQDK--KLVCTSPNCDAQGD---------TDDIKTTSKKIQ--DLFVQSSAF-------LEEGQIQ----EAVSGLKQCLVLQWKILHPSNKDIARTHDALARCYATSGDCKKSVEHLKKSLSTVELQFGACSVELAHELHKLAQLQFNGQQVAECLDTIERA---LTIFGCHYGDHHPKSKELRAMKDC 903          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: UPI001C8A79BE (SET and MYND domain-containing protein 4 isoform X1 n=2 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A79BE)

HSP 1 Score: 97.1 bits (240), Expect = 5.450e-17
Identity = 92/364 (25.27%), Postives = 154/364 (42.31%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSS-KIASLTHINVAVGLYPTAAMLNHSCRPNTLARFD--------------------GNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKG--CQGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLTEVAEDAKSWQKA---LKETDLVEKANSYNPSKEEG---IEGNHVELARKRALDLSTQCLMWRQSKLIGTAMGLARAHDLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEMFKLAGLYFNAGLLSRCFGACQQAKGSLTVCLQADDPQLQELQDMEHC 1892
            Q+R N  A++A+ V ++S   + S   I +A  ++P  ++LNHSC PNT   F                     G  + V A++ +  G+ +   YGP  S++ +  ++R  L+  Y+FHC C AC    R+ +  S ++ E         L C   G   Q  +C      L   C   C     +++  +             SW      +   D+  K   +    +E    IE +  + A K     ++Q      S L  T        D  AR+ A TG++  AASH + ++  ++ ++ +  +ELGQ++FKLA LYFN G          +    L++       ++QELQ+ME C
Sbjct:  430 QLRCNAQAVTAVMVEEESGVAVQSSNEIRIATAIFPVLSLLNHSCSPNTSISFTTGRHFVRSECDVDRPETSRGGVTVTVRASKDLTPGQEILHCYGPHCSRMEATERQRLLLEQ-YYFHCDCQAC---QRDLTEGSQNATE----NAAPGLKCAKCGKPLQVNICRKAQPVLRCVCLDVCCTFQSHMDRYMC------------SWPSCGHQISSADVQNKLKGFRCLLDEAFHLIERDRFDEALKILKSATSQA----NSILTETHPLQGELADATARVYATTGEWILAASHLKRSIVAIQAQFGEDSIELGQQLFKLAQLYFNGGDCGAALSVIPRVHKLLSLHCGPHSEEVQELQEMERC 769          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: UPI0018993D68 (SET and MYND domain-containing protein 4 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018993D68)

HSP 1 Score: 96.3 bits (238), Expect = 9.200e-17
Identity = 102/376 (27.13%), Postives = 157/376 (41.76%), Query Frame = 3
Query:  888 QVRTNVFAISALK-VSDDSSKIASLTHINVAVGLYPTAAMLNHSCRPNTLARF-----------------------DGNE-----MEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPAC-IDADRESSHASASSKEVDLAYTTTSLACRSKGCQGELCVSKHKYLSKGC----RMWCAQCGVNLNPSIAEALLTEVAEDAKSWQKALKETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLMWRQSKLIGTAMGLARAH-------DLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEMFKLAGLYFNAGLLSRCFGACQQAKGSLTVCLQADDPQLQELQDMEHC 1892
            Q+R N  AI  L+    +++++ S   + +A  ++P  ++LNHSC PNT   F                       D +E     + V A R I  G+ +   YGP +S++ +  +R+  LQ  Y+F C C AC +   R+    +  S+                   G LC+   + L K C    R     CG  ++ +     L EV    K   + L ET++ ++A               V L ++          + RQS LI     L   H       D  AR  A  GD+  AA H E++V     +Y +  +ELGQ++FKLA L+FNAG          +A+  L++      P+LQELQ ME C
Sbjct:  425 QLRCNAQAIITLQDTGAENARVQSQQEVRLATAMFPALSLLNHSCCPNTSLVFSTGTAADTCGSHKSADISDGLCEDKHEACEVTVTVRAARAINPGQEILHCYGPHSSRMVTS-ERQRLLQEQYYFLCQCEACSVQEGRQQQDGARGSRNES----------------GLLCLKCKEALKKICEGDFRCMLPTCGHRMSSAEVSHKLQEVRAALKRAVE-LMETEMPDEA---------------VRLLKQ----------IKRQSGLI-----LGETHPLHGELADATARAFASMGDWKNAADHLEQSVVATGFQYGEDSIELGQQLFKLAQLHFNAGARGAALSVIPKARQILSLHCGPHCPELQELQAMEEC 752          
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Match: UPI001BB1C5DA (SET and MYND domain-containing protein 4-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1C5DA)

HSP 1 Score: 95.1 bits (235), Expect = 2.140e-16
Identity = 89/350 (25.43%), Postives = 154/350 (44.00%), Query Frame = 3
Query:  888 QVRTNVFAISALKVSDDSSKIASLT-------HINVAVGLYPTAAMLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQRRTTLQNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKGCQGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLTEVAED-----AKSWQKALKETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLMWRQSKLIGTA-MGLARAHDLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEMFKLAGLYFNAGLLSRCFGACQQAKGSLTVCLQADDPQLQELQDMEHCCR 1898
            Q+++N  AI+ ++  +  +  A  T        + +A  +YPT +++NH+C+PN +A F  + + V AT  I  G+ +   YGP    + S   R+  L   Y F C C AC       SH  +S KE                              +G R+ C QCG  LN   +      V  D       + Q   K ++LV + ++        +EG+    A  R +   T+C +    +++ T  M LA A+D +A+  A   +F EA S   +++ ++E KY +  +E+  E++KLA +YFN   ++    A  +A    T     +  ++Q+L  M+ C +
Sbjct:  458 QLKSNSHAITHVRSPEKGNTAAKSTGIIEEISQVRIATAVYPTVSLMNHACQPNVIASFRKDIISVRATEMIRCGDEIQHCYGPQVGHMTSS-DRQEALLKQYCFTCCCRAC------KSHPKSSEKE------------------------------RGVRIKCPQCGHQLNFETSMCGPCNVRFDLVTLLTMATQAMTKISELVHEFSA--------VEGDK---ALMRDVVSRTKCCIEELEQIVVTPDMKLAEAYDFMAKCHAMLDEFKEAGSWLTKSIPMIEWKYGRDSIEVANELYKLAQIYFNGEEVAPATEAIDRALELFTRHYGNNTCEVQDLMKMKLCLK 759          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7884.2.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRX0_9STRA1.680e-2631.43SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6H5L8Y3_9PHAE1.580e-2544.51SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FV15_ECTSI1.970e-2557.01Set and mynd domain containing protein, putative n... [more]
A0A8J9Z4M1_BRALA5.660e-1927.65SMYD4 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A6P4ZFY6_BRABE1.580e-1827.89SET and MYND domain-containing protein 4 n=1 Tax=B... [more]
A0A3B4D161_PYGNA1.930e-1826.50SET and MYND domain-containing protein 4 n=3 Tax=S... [more]
C3ZQQ3_BRAFL2.770e-1726.63SET and MYND domain-containing protein 4 n=2 Tax=B... [more]
UPI001C8A79BE5.450e-1725.27SET and MYND domain-containing protein 4 isoform X... [more]
UPI0018993D689.200e-1727.13SET and MYND domain-containing protein 4 n=1 Tax=N... [more]
UPI001BB1C5DA2.140e-1625.43SET and MYND domain-containing protein 4-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7884contigC-tenellus_contig7884:3630..6573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FV15
PFAMsSET
Model size2387
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.16e-43
EggNOG OGsCOG2940@1|root,KOG2084@2759|Eukaryota
Ec32 ortholog descriptionMYND zinc finger and SET domain protein
Ec32 orthologEc-14_003800.1
Descriptionmethyltransferase activity
Cds size915
COG categoryE
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7884.2.7prot_C-tenellus_contig7884.2.7Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7884 4881..6102 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.7456443-UTR-C-tenellus_contig7884:3629..39211680790066.7456443-UTR-C-tenellus_contig7884:3629..3921Choristocarpus tenellus KU2346UTRC-tenellus_contig7884 3630..3921 +
1680790066.761053-UTR-C-tenellus_contig7884:4022..45261680790066.761053-UTR-C-tenellus_contig7884:4022..4526Choristocarpus tenellus KU2346UTRC-tenellus_contig7884 4023..4526 +
1680790066.7723224-UTR-C-tenellus_contig7884:4675..48801680790066.7723224-UTR-C-tenellus_contig7884:4675..4880Choristocarpus tenellus KU2346UTRC-tenellus_contig7884 4676..4880 +
1680790066.803798-UTR-C-tenellus_contig7884:6102..65731680790066.803798-UTR-C-tenellus_contig7884:6102..6573Choristocarpus tenellus KU2346UTRC-tenellus_contig7884 6103..6573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.7830648-CDS-C-tenellus_contig7884:4880..50091680790066.7830648-CDS-C-tenellus_contig7884:4880..5009Choristocarpus tenellus KU2346CDSC-tenellus_contig7884 4881..5009 +
1680790066.7926779-CDS-C-tenellus_contig7884:5316..61021680790066.7926779-CDS-C-tenellus_contig7884:5316..6102Choristocarpus tenellus KU2346CDSC-tenellus_contig7884 5317..6102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7884.2.7

>prot_C-tenellus_contig7884.2.7 ID=prot_C-tenellus_contig7884.2.7|Name=mRNA_C-tenellus_contig7884.2.7|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=305bp
MLNHSCRPNTLARFDGNEMEVVATRPIGQGEPLTISYGPLASKIPSVVQR
RTTLQNSYFFHCLCPACIDADRESSHASASSKEVDLAYTTTSLACRSKGC
QGELCVSKHKYLSKGCRMWCAQCGVNLNPSIAEALLTEVAEDAKSWQKAL
KETDLVEKANSYNPSKEEGIEGNHVELARKRALDLSTQCLMWRQSKLIGT
AMGLARAHDLIARLLAGTGDFAEAASHCEEAVRILEKKYSQGDVELGQEM
FKLAGLYFNAGLLSRCFGACQQAKGSLTVCLQADDPQLQELQDMEHCCRQ
QLSL*
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mRNA from alignment at C-tenellus_contig7884:3630..6573+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7884.2.7 ID=mRNA_C-tenellus_contig7884.2.7|Name=mRNA_C-tenellus_contig7884.2.7|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2944bp|location=Sequence derived from alignment at C-tenellus_contig7884:3630..6573+ (Choristocarpus tenellus KU2346)
ATTGTGGAAGCATCGGGAGTGTCTTAGGCGCCTTCCTTCCTTGGTGCGAA CTCCATCACCACCTCAATCTGCCCAAGTCTCGGAACTGATGGAAAATTCA TGTCTTCGATGCGAAAGGAAATGCAACAGGCGGAAGTGCATGGCGTGGTT GAGCCAGTCGAGGGAAACTGGTCGACATTTAGTGGCGGCATCCGATGTTC AACCTGGAGAGTTGATCCTTAGGGAATGGCCGTTTGCGTGGGCTGTGGAG AATTCTTCCATGGGGATCTTCTGCGCATACTGCTGTCACGAGGTACGTTC AAGCAAGGGATTGCCCTACCACATACATTGGCCTTTTCCCTGCTATTGAT GTTGAACACAGATAAACTAATCTGTGGTTGTTACCTTGTGCAGATTTTGG AGGAGCCGATTGGTTGTCCTGATTGCGGTGTGGTCACGTACTGCTCCACC GCATGTGCTTCGAAAGCTAATATGGCATGGCATAGTGATGAATGTCGGCG CAGAGCTAGCCATGGGCCAGAATTGGCACTCTCTGACCTCTCTATACATG CTCTTGTGGCGTTAAGGGCATCTCGACGGATCCAACGAGGTGTCAAGAAT GATCGAGACAAGCAGACCACAACTGTCGTGTCCTCTTCTTCCTGTGGGTG TGACAGGATCATACCCGGTTGTGAATCAAATCGAGTCTACATGGGAGGAT TACATAGCGTGAACAAGTTGCAAGATCACCTTGGCGAAACATCTTCTGAG AGCCTTCGACTTTTGGAAACAGAGGCGGCGATAGCCGCAGTGGTGGCTTG TGACAGCACAAGGCAAAGTGCTGAAGAGGAAGGGAGGTCTATCGACTTTA CTTCCTGTGAGGAGCTTGCAGCTGGCCTGGTCCACATAATTCGCAAGGCA AGATTTCACCTACGATTTTGTCTTCCGTCGGATGAGAGGTATACTATGCC CCAAACAGTGATGTAAACGATAGACCTGTTGGAACCTACTGCAGGGTAGA AGGCATATTACCTCCTCTCCTTCCCCTGTTTTATGTGCATCTTTAGGTTT ACCAAAGAAGGTGTAGAACTTCCTTTCAGCATAGCACATCCTCCTCAACT GAACACACTCTGAGTGCCTTCAGCTCTCCCCAACGATCAGGTCCGGACAA ACGTGTTTGCGATCTCTGCTCTTAAAGTGTCGGATGATTCATCAAAGATT GCAAGCCTGACCCATATCAATGTTGCAGTTGGACTGTACCCAACAGCAGC AATGCTGAACCACTCCTGCCGCCCCAACACCCTGGCAAGGTTTGACGGCA ATGAAATGGAAGTGGTGGCCACCCGTCCAATTGGCCAGGGCGAGCCACTC ACAATATCATATGGCCCTTTGGCCTCCAAGGTGAATGCTCACAAGATGAT ACGCATATATATATTTTCTTTACTTCAGCCTTGAAGGTGAACATGTCCGT CCCCACTCTGAAAAATTGAAATAGAGAGAGAGCATATTTGGAGGTTCGAA ATATCTTGCCAAGTCTAGCACCACTGTTCAGAGAGTCAGGTGTGTTCATT TGCTTCTCCCAGCTGTTTCATCAGGTACAAAGCCATGCAGACGTTGCCAA GAACGATTCAAGGGGGACAATAATATCGCCTTCGCATTTCCACCAACAAC ACACACACCCTTACGTCTTCTCGCCCCTTTGCTTCAGATCCCCTCTGTTG TACAGCGGCGGACTACTTTGCAAAATTCATACTTCTTCCACTGCCTCTGT CCTGCATGCATAGACGCAGACCGAGAATCCTCACATGCTTCAGCAAGTTC CAAGGAGGTCGACCTGGCCTATACCACCACATCCCTTGCTTGCCGATCCA AAGGATGCCAAGGTGAACTTTGTGTTAGCAAGCACAAGTACCTGAGCAAA GGATGTAGGATGTGGTGTGCCCAATGTGGTGTCAACCTCAATCCATCAAT AGCTGAGGCCCTGCTAACAGAGGTTGCTGAGGATGCCAAATCCTGGCAAA AGGCATTAAAGGAAACGGATTTAGTAGAGAAGGCAAACAGTTACAACCCT AGTAAGGAGGAAGGAATAGAAGGTAACCACGTAGAGCTTGCTCGCAAGAG AGCCCTGGATTTATCTACACAATGCCTCATGTGGCGCCAGAGCAAGCTTA TTGGCACTGCGATGGGGCTAGCAAGGGCACATGATCTCATAGCCCGACTT CTTGCTGGGACTGGAGACTTTGCAGAGGCAGCATCCCACTGTGAGGAAGC TGTGAGGATTCTTGAGAAGAAATACTCACAGGGAGATGTCGAGCTTGGTC AGGAGATGTTTAAGCTGGCCGGGTTGTACTTCAATGCAGGACTCCTAAGT CGCTGCTTTGGGGCATGCCAACAGGCGAAGGGTTCCCTCACTGTGTGCCT ACAAGCTGATGACCCCCAGCTGCAAGAGCTCCAAGACATGGAGCACTGTT GTCGGCAACAGCTCTCTTTGTGAAGCATGGTGTTCTGATCCCCTTGGAAC ACTGCATTGAAAGAGTTTAATTGTCTCAAAACCAACCACTACAGTGATGC TATAGCAGTGCCTATTTATGGCTTTTTGTCGTGTACAAGACAATGATTTG TGTTCCACCGAAGGTGTTCTGTATGTGTTTAGAAATTGTGCTGTGCCTTG ATGTGCACCACGAAGGCGGTGTGTGTTCTCAAATTGCACTGTTTACATTT ATGAAGCCCTATGTGTTGCAATATATGTTGATAAGCAATGAACTCGCATT GATGTATTCTAGTGTGTACACTCCAAGTATAGTTTGTGACTCAAATTATC TGGGGGGGGTAGCGGCTGTCCATTTGAGGCCATTTTTTTTAATGTCGCAA ATGTTGGGTGATTTGGTTGCATACGTTGGATGGACAATGTAAGTGCACTT TTCCTGGTTATGGACCAAATGGACACCCTGGTGTAGACCCCCCT
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Coding sequence (CDS) from alignment at C-tenellus_contig7884:3630..6573+

>mRNA_C-tenellus_contig7884.2.7 ID=mRNA_C-tenellus_contig7884.2.7|Name=mRNA_C-tenellus_contig7884.2.7|organism=Choristocarpus tenellus KU2346|type=CDS|length=915bp|location=Sequence derived from alignment at C-tenellus_contig7884:3630..6573+ (Choristocarpus tenellus KU2346)
ATGCTGAACCACTCCTGCCGCCCCAACACCCTGGCAAGGTTTGACGGCAA
TGAAATGGAAGTGGTGGCCACCCGTCCAATTGGCCAGGGCGAGCCACTCA
CAATATCATATGGCCCTTTGGCCTCCAAGATCCCCTCTGTTGTACAGCGG
CGGACTACTTTGCAAAATTCATACTTCTTCCACTGCCTCTGTCCTGCATG
CATAGACGCAGACCGAGAATCCTCACATGCTTCAGCAAGTTCCAAGGAGG
TCGACCTGGCCTATACCACCACATCCCTTGCTTGCCGATCCAAAGGATGC
CAAGGTGAACTTTGTGTTAGCAAGCACAAGTACCTGAGCAAAGGATGTAG
GATGTGGTGTGCCCAATGTGGTGTCAACCTCAATCCATCAATAGCTGAGG
CCCTGCTAACAGAGGTTGCTGAGGATGCCAAATCCTGGCAAAAGGCATTA
AAGGAAACGGATTTAGTAGAGAAGGCAAACAGTTACAACCCTAGTAAGGA
GGAAGGAATAGAAGGTAACCACGTAGAGCTTGCTCGCAAGAGAGCCCTGG
ATTTATCTACACAATGCCTCATGTGGCGCCAGAGCAAGCTTATTGGCACT
GCGATGGGGCTAGCAAGGGCACATGATCTCATAGCCCGACTTCTTGCTGG
GACTGGAGACTTTGCAGAGGCAGCATCCCACTGTGAGGAAGCTGTGAGGA
TTCTTGAGAAGAAATACTCACAGGGAGATGTCGAGCTTGGTCAGGAGATG
TTTAAGCTGGCCGGGTTGTACTTCAATGCAGGACTCCTAAGTCGCTGCTT
TGGGGCATGCCAACAGGCGAAGGGTTCCCTCACTGTGTGCCTACAAGCTG
ATGACCCCCAGCTGCAAGAGCTCCAAGACATGGAGCACTGTTGTCGGCAA
CAGCTCTCTTTGTGA
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