mRNA_C-tenellus_contig7883.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7883.2.1
Unique NamemRNA_C-tenellus_contig7883.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7883.2.1 vs. uniprot
Match: A0A7S0VUI0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUI0_9CRYP)

HSP 1 Score: 66.6 bits (161), Expect = 7.020e-9
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 3 
Query:  438 EDVKVDLISMVHVGDSAYYRDIVRDAEG-YDRVLFELIVGTDVVSKDDEGRRKIVERVYPTRDQ 626
            E+V VD++S+VH+ D  YYR+I + A+  +DRVLFELI  T +VS D++GRR++ E + P  DQ
Sbjct:  202 EEVTVDIVSLVHLADPRYYREIQQFADSKHDRVLFELIADTSLVSTDEQGRRRLSEHLLPAPDQ 265
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BLAST of mRNA_C-tenellus_contig7883.2.1 vs. uniprot
Match: A0A7S1ECB4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1ECB4_HEMAN)

HSP 1 Score: 58.5 bits (140), Expect = 3.180e-6
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 3 
Query:  438 EDVKVDLISMVHVGDSAYYRDIVRDAEG-YDRVLFELIVGTDVVSKDDEGRRKIVERVYPTRDQ 626
            +++ VD++S+VH+ D  YYR+I + A+  +DRVL+ELI  + ++S D EGR ++ E + P  DQ
Sbjct:   83 KEMTVDIVSLVHLADPRYYREIQQFADSQHDRVLYELIADSSLISTDPEGRSRLKEHLLPAPDQ 146
[Close]
BLAST of mRNA_C-tenellus_contig7883.2.1 vs. uniprot
Match: A0A7S1E8V3_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E8V3_HEMAN)

HSP 1 Score: 58.5 bits (140), Expect = 3.590e-6
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 3 
Query:  438 EDVKVDLISMVHVGDSAYYRDIVRDAEG-YDRVLFELIVGTDVVSKDDEGRRKIVERVYPTRDQ 626
            +++ VD++S+VH+ D  YYR+I + A+  +DRVL+ELI  + ++S D EGR ++ E + P  DQ
Sbjct:  213 KEMTVDIVSLVHLADPRYYREIQQFADSQHDRVLYELIADSSLISTDPEGRSRLKEHLLPAPDQ 276
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7883.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0VUI0_9CRYP7.020e-950.00Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1ECB4_HEMAN3.180e-642.19Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1E8V3_HEMAN3.590e-642.19Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7883contigC-tenellus_contig7883:3972..4758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog55529.EKX39281
Model size787
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.39e-05
EggNOG OGs28I0W@1|root,2QQBM@2759|Eukaryota
Cds size576
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.6452599-UTR-C-tenellus_contig7883:3971..40361680790066.6452599-UTR-C-tenellus_contig7883:3971..4036Choristocarpus tenellus KU2346UTRC-tenellus_contig7883 3972..4036 +
1680790066.6707194-UTR-C-tenellus_contig7883:4612..47581680790066.6707194-UTR-C-tenellus_contig7883:4612..4758Choristocarpus tenellus KU2346UTRC-tenellus_contig7883 4613..4758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.657321-CDS-C-tenellus_contig7883:4036..46121680790066.657321-CDS-C-tenellus_contig7883:4036..4612Choristocarpus tenellus KU2346CDSC-tenellus_contig7883 4037..4612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7883.2.1prot_C-tenellus_contig7883.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7883 4037..4612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7883.2.1

>prot_C-tenellus_contig7883.2.1 ID=prot_C-tenellus_contig7883.2.1|Name=mRNA_C-tenellus_contig7883.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=192bp
MAGTGPCFAVLALTALPLPAMGFNSQPHPTPYPIKSKMFRHRLVIKAVQG
SGGELRQALSSKTSKGPFRLMKTGTSVELQTASYTLVCPSPSQVPGGRVP
SRADDDMVPGSLFSTFGMKEGEIQEDVKVDLISMVHVGDSAYYRDIVRDA
EGYDRVLFELIVGTDVVSKDDEGRRKIVERVYPTRDQVWGG*
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mRNA from alignment at C-tenellus_contig7883:3972..4758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7883.2.1 ID=mRNA_C-tenellus_contig7883.2.1|Name=mRNA_C-tenellus_contig7883.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=787bp|location=Sequence derived from alignment at C-tenellus_contig7883:3972..4758+ (Choristocarpus tenellus KU2346)
AAGAGGAGGTACATTAAGGCACGTAATTTCCATATCCAGGTCTGCTGTCT
TCCACAGACAGTGACATGGCTGGCACAGGGCCATGCTTTGCAGTGCTGGC
TTTGACAGCATTGCCATTGCCAGCAATGGGGTTCAACTCCCAGCCTCACC
CAACTCCCTACCCCATCAAGTCCAAAATGTTTCGACATAGACTTGTCATC
AAAGCGGTCCAAGGTTCCGGTGGGGAGCTTCGACAAGCCTTATCCAGCAA
AACGAGTAAAGGACCTTTTCGACTGATGAAAACGGGTACATCGGTGGAGC
TGCAGACCGCGTCGTACACCTTGGTTTGCCCTTCCCCTTCCCAAGTTCCT
GGGGGGAGGGTCCCATCTAGGGCGGATGATGACATGGTTCCGGGGTCGTT
ATTCTCTACTTTTGGAATGAAAGAAGGTGAAATCCAGGAAGATGTGAAGG
TTGACTTGATCTCTATGGTCCATGTTGGGGACTCAGCGTACTATCGTGAC
ATTGTAAGGGATGCAGAGGGCTATGATCGGGTTCTTTTTGAGTTGATCGT
GGGGACAGATGTGGTGAGCAAGGACGACGAGGGAAGAAGAAAAATCGTGG
AGCGGGTGTACCCCACCAGGGATCAGGTATGGGGTGGGTAAATAGAAGTT
GATTTTCTTTCCTAGCGAACATGGGGCAATGTCTGCCAACGAGCGTTCCT
TACCGTATTGTGTACATAATTTGGTCTTCCCCGGCACGTTTCTCTGAGTT
TTTTTTCCTTGTTGCATTGTGCATTATCGCATTTGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig7883:3972..4758+

>mRNA_C-tenellus_contig7883.2.1 ID=mRNA_C-tenellus_contig7883.2.1|Name=mRNA_C-tenellus_contig7883.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=576bp|location=Sequence derived from alignment at C-tenellus_contig7883:3972..4758+ (Choristocarpus tenellus KU2346)
ATGGCTGGCACAGGGCCATGCTTTGCAGTGCTGGCTTTGACAGCATTGCC
ATTGCCAGCAATGGGGTTCAACTCCCAGCCTCACCCAACTCCCTACCCCA
TCAAGTCCAAAATGTTTCGACATAGACTTGTCATCAAAGCGGTCCAAGGT
TCCGGTGGGGAGCTTCGACAAGCCTTATCCAGCAAAACGAGTAAAGGACC
TTTTCGACTGATGAAAACGGGTACATCGGTGGAGCTGCAGACCGCGTCGT
ACACCTTGGTTTGCCCTTCCCCTTCCCAAGTTCCTGGGGGGAGGGTCCCA
TCTAGGGCGGATGATGACATGGTTCCGGGGTCGTTATTCTCTACTTTTGG
AATGAAAGAAGGTGAAATCCAGGAAGATGTGAAGGTTGACTTGATCTCTA
TGGTCCATGTTGGGGACTCAGCGTACTATCGTGACATTGTAAGGGATGCA
GAGGGCTATGATCGGGTTCTTTTTGAGTTGATCGTGGGGACAGATGTGGT
GAGCAAGGACGACGAGGGAAGAAGAAAAATCGTGGAGCGGGTGTACCCCA
CCAGGGATCAGGTATGGGGTGGGTAA
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