mRNA_C-tenellus_contig7881.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7881.3.1
Unique NamemRNA_C-tenellus_contig7881.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7881.3.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.400e-16
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:  331 FCQDFSTYKREGRVGYCFKQFDKRPVEFLYLVPPSLAPQVPLLGRTPAAAAAEEGHLCCMVVT 519
            FCQ+F+ YK +GR GYCFKQFDK+ VEFLYLVPP+LAPQVPLL + PAA    +GHL C+V+T
Sbjct: 1580 FCQEFAAYKNQGRAGYCFKQFDKKHVEFLYLVPPALAPQVPLLAQNPAA----QGHLVCLVIT 1638
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7881.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF7_ECTSI6.400e-1668.25TFIIS central domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7881contigC-tenellus_contig7881:818..5048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2867
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002800.1
Cds size1467
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.4330165-UTR-C-tenellus_contig7881:817..11261680790066.4330165-UTR-C-tenellus_contig7881:817..1126Choristocarpus tenellus KU2346UTRC-tenellus_contig7881 818..1126 +
1680790066.4836206-UTR-C-tenellus_contig7881:3957..50481680790066.4836206-UTR-C-tenellus_contig7881:3957..5048Choristocarpus tenellus KU2346UTRC-tenellus_contig7881 3958..5048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790066.443303-CDS-C-tenellus_contig7881:1126..21311680790066.443303-CDS-C-tenellus_contig7881:1126..2131Choristocarpus tenellus KU2346CDSC-tenellus_contig7881 1127..2131 +
1680790066.453585-CDS-C-tenellus_contig7881:2584..28061680790066.453585-CDS-C-tenellus_contig7881:2584..2806Choristocarpus tenellus KU2346CDSC-tenellus_contig7881 2585..2806 +
1680790066.4718764-CDS-C-tenellus_contig7881:3717..39571680790066.4718764-CDS-C-tenellus_contig7881:3717..3957Choristocarpus tenellus KU2346CDSC-tenellus_contig7881 3718..3957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7881.3.1prot_C-tenellus_contig7881.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7881 1127..3957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7881.3.1

>prot_C-tenellus_contig7881.3.1 ID=prot_C-tenellus_contig7881.3.1|Name=mRNA_C-tenellus_contig7881.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=489bp
MFFFCRTFCQDFSTYKREGRVGYCFKQFDKRPVEFLYLVPPSLAPQVPLL
GRTPAAAAAEEGHLCCMVVTSYPQQEHLRSPTGPPQSGGMQAPSKAQVRA
VLGPGLIGRPGGVSPAQSMTLSPHSQDVPPLQPPPPPHKASHGHTNNTTN
EGLGALHSHGPAPNLTPVMSSIPHPAPPRAPTAGGGMSTGGGRIGQPSPG
VASTPQFDPHSCPPPQAVSTYAQSQPPVQGSGPSVVANPGVSMPLPPPPP
PPPPPQNCPLSRSDIGGRGSRDGAGAGLPQFSTTAPAGAPGGWEGVRGGG
QLVGLQLPGQVMGTPAADHGKFGVRVETQMGMPQQAAPMTGPPGPLARPP
PPPPPPPPPMVIQPTAPPGGAPQSGGAQWYNSGEASSQHGLHQQMEEVAQ
RVASVGPGELEAMRQLPGARTQHPFIFDDDPGFAKFRVKITDLVMPRLQG
RPGIAAQPPQQQYGHVHSIAPGLGPESTPTHGTDQGHR*
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mRNA from alignment at C-tenellus_contig7881:818..5048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7881.3.1 ID=mRNA_C-tenellus_contig7881.3.1|Name=mRNA_C-tenellus_contig7881.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4231bp|location=Sequence derived from alignment at C-tenellus_contig7881:818..5048+ (Choristocarpus tenellus KU2346)
CCCATATTTGCTAGGAGGCTCTGTGTTGAGGTGGGTTCAATGTGCATTTA
TGTTCTCAAGGTTCAGCAACAGTATTAGAACCCCCCCCCCTTGCCCCATC
CATGTCTTCCTAGTGAAGTGTTTCATGTTGGCACTGGCTCTTTCCGATTT
ACCATTGGTACTGAAGGCACAAAAATGTGCAATATTTCCAATATAACTGA
TGTTGAGCACCCCTTCACTCATCTCTACTGAGAGTTGCAGTCCACCACCC
CCCTCACACAATCATCAATCAAAAAACGCCACACACACACACACACATGT
CACGAAAAAATGTTCTTCTTCTGCAGGACGTTCTGCCAGGACTTCTCGAC
GTACAAGAGGGAAGGTCGGGTAGGATACTGCTTCAAACAGTTTGACAAGC
GCCCCGTGGAGTTTCTTTACCTGGTGCCTCCGAGCCTTGCCCCTCAGGTG
CCCCTCCTAGGGCGGACCCCTGCAGCAGCAGCTGCCGAGGAAGGTCACCT
GTGCTGCATGGTCGTCACATCATATCCACAACAAGAGCATCTTCGCTCCC
CAACAGGGCCTCCCCAATCTGGTGGGATGCAGGCGCCGTCAAAGGCACAG
GTTCGGGCAGTCTTGGGACCGGGATTGATCGGCAGACCTGGGGGGGTCAG
TCCTGCTCAATCCATGACATTGTCACCACACTCACAGGATGTGCCTCCAC
TACAGCCGCCACCACCACCTCACAAGGCCTCTCATGGACACACCAACAAT
ACAACTAATGAGGGACTGGGAGCCCTTCACAGTCATGGACCAGCACCAAA
CTTGACCCCAGTGATGAGCTCAATCCCACATCCTGCCCCACCAAGAGCCC
CAACAGCTGGAGGAGGGATGTCAACAGGTGGGGGGAGGATAGGGCAGCCT
TCACCAGGGGTGGCAAGTACCCCACAGTTCGATCCACATTCTTGCCCTCC
CCCGCAGGCGGTCTCAACATATGCTCAGTCTCAACCTCCAGTGCAAGGCT
CTGGACCTTCTGTAGTTGCAAATCCAGGAGTGTCAATGCCTCTCCCACCC
CCCCCCCCCCCCCCCCCCCCCCCCCAAAATTGTCCCCTTAGCCGAAGTGA
CATTGGGGGCAGGGGGTCGAGAGATGGGGCAGGGGCAGGGTTGCCTCAGT
TCTCTACCACTGCTCCAGCAGGTGCACCTGGCGGGTGGGAAGGGGTGCGG
GGGGGGGGACAATTGGTGGGGTTGCAACTGCCGGGGCAGGTGATGGGGAC
TCCAGCAGCTGATCATGGGAAGTTTGGTGTGAGAGTGGAGACTCAGATGG
GAATGCCACAGCAGGTGACTTTTGTAGTATGATTGAAGAGGCTTTGTTGT
GGTTTTAGAGGTAGAATTTTCTGGGAGGGTGTGGGGACTTAATTTTTTAC
CATGGCTTAGGGTGGCTACTTGATGTTGAATTGTGAGAGAGATGTGGAAA
GGAGGAATTTTTATTTTGTTCTTACAAGAGTGCAATGGCTGGCAGTTATG
CTTTGTGTTCTAAGAACCCGTGATGCATCTCCATAGGCATATTAACTGTG
TATTTGTAGTGTACAGTGCAGTTAAGCACCGTTACTGATACAAGGGTTTT
GTAGAGCATATTATGGCTGTGTTGTTGGATGTACAAGTCCGGTGATGGTA
CTTTTTTAGAGACCCTGATAGTGGAAAAATTAGTGCTCAGTTGGAGGACC
AATATAAAACACCAACACAACCAACACATTTGTACTCACTGTGTGTATAC
CCTCTACATTTCCCTAGGCTGCTCCCATGACTGGTCCGCCGGGACCTCTT
GCCCGCCCACCACCACCTCCACCACCACCACCTCCGCCAATGGTAATCCA
GCCAACAGCTCCACCAGGTGGTGCACCTCAATCTGGTGGGGCACAGTGGT
ACAACAGTGGGGAGGCATCAAGTCAACACGGACTTCATCAGCAGATGGAG
GAGGTTGCCCAGCGTGTTGCTTCTGTTGGACCTGGGGAGGTAAGTGTTGC
ATCGTGTGCTTACTCTACAGGGCATGCTGTTGCTTGGGGTTTAGGGGGAA
AGAATTCCTTTGTTATATTGTTCAACTCTGTTCCTGCTGCCCTTTGCGAC
CATGGGAAGCTTGTTTTATATGGTGTTATTGGGGGAAGCACATGTAAGGG
GTGAGAGTACTTCCTGGACAAACTATTGCTCATCGCTGCCATTTTATTTA
TTTTTTGGTGGGTGGCTGCCTAAAAAGAGTGGTACGTTTAAGGCTATTAA
CTATGCAATGAATCATCAAGAAGCATTGATGCGNNNNNNNNNNATAATGC
TGCAGAGAGAGCTATGCGATCTATTGCCATTGGTCGTAAAAACTGGTTGT
GTGCATGGTCTCGAGGTAGCTCTTGGATCCCAAGCAGGGATGATTGGGTT
GAATGTGATTCATGGGGATTGAATGAACAAAATCGGTGGATCGTGCCTGC
CATTGTTGCGTCCTTGTAGTTATTTGCTCCAGCTGTGTTTACATGTTAAG
TTCGTGGATGACTTGATGGGAAAATGGAGGCGTAGTAAATGGTGCTCCAA
GTAGTTGACAGACATTTTTTTAATTCAAGAATCCTCTCCTGTAGTTCGTT
AATATAAACAAATGTTTTTGAGGGGAAAATTTTGTACAGGCCTTGGGTTT
TGGTATTTTGCAAACATACTTTTGAGAGGTGTTGCTACAAATATTGTTAG
GGGAAAGGGGGAAATAGGAGAGCAAAGCACATCCTAACGGGGTGCTGGAG
AGGGTTTGCATGATGATTTCATCATTTTTATTCATCTGTTTCATACAAGC
GTTCTGTAACAGCAAGGTACAGTGAAGTGATCCTCCCTGCTCCAGTGCAT
ATTTTGCTGTCAAGTCTCTAACTTCACCATGCACACAATTCTGCTCACAG
CTGGAGGCTATGAGGCAGTTGCCAGGGGCCAGGACACAGCATCCCTTTAT
CTTCGATGATGATCCTGGCTTTGCCAAGTTCAGAGTAAAGATCACAGACC
TTGTGATGCCCAGGCTGCAGGGTCGGCCAGGCATAGCAGCACAGCCACCA
CAACAGCAGTATGGACATGTGCATTCCATTGCCCCTGGGCTGGGGCCTGA
GTCAACCCCAACACATGGGACCGATCAGGGTCACAGATAAAATGCTCACA
TTGGGGTGAAAAACAATGCGAATCAACACATATGAACGGGAGACAGTGGA
GGTAGGTATGATGGGAAGGCAAGGAGATGTAATTGGAGATGGTGTGCAAG
TAGTCATATGAAGGATGGGTGATGTTCAACCTTTCTTTGGGGGAGATAAA
GCATCACACATCCCACCACACAAGAGGCTGAAATTCAAGGGTGTGCGTGT
AGGGAATGAAGGTGACAATGACTTGTAAACTTCGTGGGGCTTGGTTTTGG
GGGGGGTGCGTAGGCAGTTAGAGTGGCCCAAAGTGGTGGTCTGTCAAGTT
TTGGCAGTTGCTGATTCTCAGGTGGTAATGCATTTGATGTACTGTGATCT
GTTTTTCCTTGTGAAATGGGTTAGCCATGTTTCTATTCTGCGGAGTGTTT
TGATGTGTACATTTGTTTGTAAGGGGGTGAAAAGGATGCCCATGTCCTTC
TTTGTATAACTTCGAAGCATTATTGTGCTTCTAAGTATAATCTAAGAAAT
TTCTATACCTTTCTTGCTCCTGATACGTGCCATTGGAAGCCAAGGCCCTT
GTTGGTGCTACAGAGTTATGATGCTAATGTTGTAATGTCTCGCCTCTGTG
GCAGTGCTTTGTGATCGTTGTTTTCTGGTTTGCATCTAATGGAAGGAGTA
ACTTGTTGCAGAGCAACAGCGAAAGAAGGATGGAAGCAGGTTGCGGTTGC
CTCTTGAGTTCACGCATGCATGCCTTGATTGAAGGTCTCAAGTATGACTT
TATGGTAGTGTGAGTAGTCCAGATATATTATGTGGACTGGATGGTGACAT
CGCAATGGAGAGAAATCTGCCTGCCACTTTCAAAGTTTGAGGGATACGTC
CTGTGAGTTCGTTGCTGCAGCAGAGAAAAAGCACACGCCAAAAAAGAAAA
ATCAAGACTCGCGTGACATCTGCACTGTGGCCATACCTCAGTAAGGGGCA
AGCATCCTCCTCATGATGCGTATGAAAGGACTTGTCCTGGTAGGTACTGG
AGGGGTGCTCCACTACTACCTATGATTCTCCTGCATGCAAGGGAGTCAAT
AATGCATTGTGAACAATGTCCTAACAGCAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7881:818..5048+

>mRNA_C-tenellus_contig7881.3.1 ID=mRNA_C-tenellus_contig7881.3.1|Name=mRNA_C-tenellus_contig7881.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1467bp|location=Sequence derived from alignment at C-tenellus_contig7881:818..5048+ (Choristocarpus tenellus KU2346)
ATGTTCTTCTTCTGCAGGACGTTCTGCCAGGACTTCTCGACGTACAAGAG
GGAAGGTCGGGTAGGATACTGCTTCAAACAGTTTGACAAGCGCCCCGTGG
AGTTTCTTTACCTGGTGCCTCCGAGCCTTGCCCCTCAGGTGCCCCTCCTA
GGGCGGACCCCTGCAGCAGCAGCTGCCGAGGAAGGTCACCTGTGCTGCAT
GGTCGTCACATCATATCCACAACAAGAGCATCTTCGCTCCCCAACAGGGC
CTCCCCAATCTGGTGGGATGCAGGCGCCGTCAAAGGCACAGGTTCGGGCA
GTCTTGGGACCGGGATTGATCGGCAGACCTGGGGGGGTCAGTCCTGCTCA
ATCCATGACATTGTCACCACACTCACAGGATGTGCCTCCACTACAGCCGC
CACCACCACCTCACAAGGCCTCTCATGGACACACCAACAATACAACTAAT
GAGGGACTGGGAGCCCTTCACAGTCATGGACCAGCACCAAACTTGACCCC
AGTGATGAGCTCAATCCCACATCCTGCCCCACCAAGAGCCCCAACAGCTG
GAGGAGGGATGTCAACAGGTGGGGGGAGGATAGGGCAGCCTTCACCAGGG
GTGGCAAGTACCCCACAGTTCGATCCACATTCTTGCCCTCCCCCGCAGGC
GGTCTCAACATATGCTCAGTCTCAACCTCCAGTGCAAGGCTCTGGACCTT
CTGTAGTTGCAAATCCAGGAGTGTCAATGCCTCTCCCACCCCCCCCCCCC
CCCCCCCCCCCCCCCCAAAATTGTCCCCTTAGCCGAAGTGACATTGGGGG
CAGGGGGTCGAGAGATGGGGCAGGGGCAGGGTTGCCTCAGTTCTCTACCA
CTGCTCCAGCAGGTGCACCTGGCGGGTGGGAAGGGGTGCGGGGGGGGGGA
CAATTGGTGGGGTTGCAACTGCCGGGGCAGGTGATGGGGACTCCAGCAGC
TGATCATGGGAAGTTTGGTGTGAGAGTGGAGACTCAGATGGGAATGCCAC
AGCAGGCTGCTCCCATGACTGGTCCGCCGGGACCTCTTGCCCGCCCACCA
CCACCTCCACCACCACCACCTCCGCCAATGGTAATCCAGCCAACAGCTCC
ACCAGGTGGTGCACCTCAATCTGGTGGGGCACAGTGGTACAACAGTGGGG
AGGCATCAAGTCAACACGGACTTCATCAGCAGATGGAGGAGGTTGCCCAG
CGTGTTGCTTCTGTTGGACCTGGGGAGCTGGAGGCTATGAGGCAGTTGCC
AGGGGCCAGGACACAGCATCCCTTTATCTTCGATGATGATCCTGGCTTTG
CCAAGTTCAGAGTAAAGATCACAGACCTTGTGATGCCCAGGCTGCAGGGT
CGGCCAGGCATAGCAGCACAGCCACCACAACAGCAGTATGGACATGTGCA
TTCCATTGCCCCTGGGCTGGGGCCTGAGTCAACCCCAACACATGGGACCG
ATCAGGGTCACAGATAA
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