mRNA_C-tenellus_contig7859.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7859.6.1
Unique NamemRNA_C-tenellus_contig7859.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A835YLV8_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.950e-16
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            ++LRF FYL+FFGI+FTFYG+PLHIVRDLWVSY+ LRRRLQA+NR
Sbjct:  232 ELLRFFFYLIFFGIVFTFYGMPLHIVRDLWVSYSTLRRRLQAYNR 276          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: F0YMN2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMN2_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 6.350e-13
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            +VLRF FY+VFF I+FT+YG+PLHIVR+LWVSY +LRRRL A+ R
Sbjct:  229 EVLRFAFYVVFFTIVFTYYGVPLHIVRELWVSYVSLRRRLAAYKR 273          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A4D9CLU7_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLU7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            +V+RFL Y+VFF IIFT+YG+PLHIVRDLW+SY NL+RRL  FN+
Sbjct:  219 EVVRFLSYVVFFSIIFTYYGMPLHIVRDLWMSYVNLKRRLVIFNK 263          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A7S2GDQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GDQ5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.530e-12
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            +++RF+ YL+FF IIFT+YG+PLHI+R+LWVSY NLRRRL A+ R
Sbjct:   96 EMVRFIAYLIFFTIIFTYYGMPLHIIRELWVSYQNLRRRLVAYQR 140          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A7S4DEQ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEQ8_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 3.360e-11
Identity = 27/45 (60.00%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            +V+RF FYLVFF ++FT+YG+PLH+VRDLW  Y+ LR+RL+A+ +
Sbjct:   62 EVVRFGFYLVFFALVFTYYGVPLHLVRDLWGCYSKLRKRLEAYRK 106          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A8J2SMG0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMG0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.660e-11
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            +VLRF  Y+VFF I+F +YG+PLHIVR+LW SY  LR+RLQAF +
Sbjct:  220 EVLRFAAYVVFFSIVFAYYGVPLHIVRELWASYVQLRQRLQAFKK 264          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A662Y1M1_9STRA (RING-type domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1M1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 27/45 (60.00%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            ++++ L YLVFF +IFT+YG+PLHIVRDLWVS  NL+RR+ ++ R
Sbjct:  225 EIVKLLVYLVFFLLIFTYYGMPLHIVRDLWVSIKNLQRRVASYFR 269          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: M4C0U1_HYAAE (RING-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0U1_HYAAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 25/45 (55.56%), Postives = 38/45 (84.44%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            +V++ + YL+FF +IF +YG+PLHIVRDLWVS+ NL+RR+ ++ R
Sbjct:  219 EVIKLVVYLIFFMLIFAYYGMPLHIVRDLWVSFKNLQRRISSYFR 263          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A024GDM0_9STRA (RING-type domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDM0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    1 KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR 135
            +V++ + YLVFF +IF FYG+PLHIVRDLW+S  NL+RR+ +F R
Sbjct:  219 EVIKLIIYLVFFMLIFKFYGMPLHIVRDLWLSIRNLQRRIASFFR 263          
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Match: A0A7S2GY65_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GY65_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.540e-8
Identity = 24/41 (58.54%), Postives = 37/41 (90.24%), Query Frame = 1
Query:   10 RFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFN 132
            +FLFYL+FF I+FT+YG+P++I R++++SY NLR+RL AF+
Sbjct:   30 KFLFYLIFFAIVFTYYGMPINIFREVYMSYQNLRKRLSAFH 70          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7859.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLV8_9STRA3.950e-1680.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
F0YMN2_AURAN6.350e-1371.11Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A4D9CLU7_9STRA1.800e-1271.11RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S2GDQ5_9STRA4.530e-1266.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4DEQ8_HETAK3.360e-1160.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2SMG0_9STRA7.660e-1164.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662Y1M1_9STRA1.140e-860.00RING-type domain-containing protein n=2 Tax=Nothop... [more]
M4C0U1_HYAAE1.140e-855.56RING-type domain-containing protein n=1 Tax=Hyalop... [more]
A0A024GDM0_9STRA1.140e-860.00RING-type domain-containing protein n=1 Tax=Albugo... [more]
A0A7S2GY65_9STRA1.540e-858.54Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7859contigC-tenellus_contig7859:6299..6433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009041671.1
Preferred nameSYVN1
PFAMszf-RING_2,zf-rbx1
Model size135
Max annot lvl2759|Eukaryota
KEGG koko:K10601
KEGG Pathwayko04120,ko04141,map04120,map04141
KEGG ModuleM00403
Hectar predicted targeting categorysignal anchor
GOsGO:0000151,GO:0000153,GO:0000209,GO:0000835,GO:0000836,GO:0000839,GO:0001701,GO:0002020,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005790,GO:0005886,GO:0006417,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008593,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009790,GO:0009792,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010608,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030163,GO:0030176,GO:0030433,GO:0030968,GO:0030970,GO:0031224,GO:0031227,GO:0031323,GO:0031326,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032527,GO:0032991,GO:0033036,GO:0033554,GO:0034248,GO:0034613,GO:0034620,GO:0034645,GO:0034976,GO:0035264,GO:0035966,GO:0035967,GO:0036211,GO:0036335,GO:0036490,GO:0036498,GO:0036503,GO:0036507,GO:0036508,GO:0036513,GO:0040007,GO:0042175,GO:0042221,GO:0042592,GO:0042886,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043555,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051117,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060548,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070647,GO:0070727,GO:0070887,GO:0070936,GO:0071310,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1902235,GO:1902236,GO:1902494,GO:1902531,GO:1902532,GO:1903513,GO:1903573,GO:1904380,GO:1905897,GO:1990234,GO:1990381,GO:2000112,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Exons1
Evalue1.04e-13
EggNOG OGsCOG5243@1|root,KOG0802@2759|Eukaryota
EC2.3.2.27
Descriptionprotein polyubiquitination
Cds size135
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790065.0839295-CDS-C-tenellus_contig7859:6298..64331680790065.0839295-CDS-C-tenellus_contig7859:6298..6433Choristocarpus tenellus KU2346CDSC-tenellus_contig7859 6299..6433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7859.6.1prot_C-tenellus_contig7859.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7859 6299..6433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7859.6.1

>prot_C-tenellus_contig7859.6.1 ID=prot_C-tenellus_contig7859.6.1|Name=mRNA_C-tenellus_contig7859.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=45bp
KVLRFLFYLVFFGIIFTFYGIPLHIVRDLWVSYTNLRRRLQAFNR
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mRNA from alignment at C-tenellus_contig7859:6299..6433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7859.6.1 ID=mRNA_C-tenellus_contig7859.6.1|Name=mRNA_C-tenellus_contig7859.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=135bp|location=Sequence derived from alignment at C-tenellus_contig7859:6299..6433+ (Choristocarpus tenellus KU2346)
AAGGTCCTTCGGTTCTTATTCTATCTCGTGTTCTTTGGGATAATCTTCAC TTTCTATGGGATTCCTTTGCACATTGTGAGGGATCTCTGGGTCTCCTACA CAAACCTTAGAAGGCGACTGCAGGCGTTCAACAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7859:6299..6433+

>mRNA_C-tenellus_contig7859.6.1 ID=mRNA_C-tenellus_contig7859.6.1|Name=mRNA_C-tenellus_contig7859.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=135bp|location=Sequence derived from alignment at C-tenellus_contig7859:6299..6433+ (Choristocarpus tenellus KU2346)
AAGGTCCTTCGGTTCTTATTCTATCTCGTGTTCTTTGGGATAATCTTCAC
TTTCTATGGGATTCCTTTGCACATTGTGAGGGATCTCTGGGTCTCCTACA
CAAACCTTAGAAGGCGACTGCAGGCGTTCAACAGG
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