mRNA_C-tenellus_contig7851.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7851.1.1
Unique NamemRNA_C-tenellus_contig7851.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7851.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7851contigC-tenellus_contig7851:76..1928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size609
Hectar predicted targeting categorysignal peptide
Exons3
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.8938842-CDS-C-tenellus_contig7851:75..1801680790064.8938842-CDS-C-tenellus_contig7851:75..180Choristocarpus tenellus KU2346CDSC-tenellus_contig7851 76..180 -
1680790064.9060571-CDS-C-tenellus_contig7851:969..10411680790064.9060571-CDS-C-tenellus_contig7851:969..1041Choristocarpus tenellus KU2346CDSC-tenellus_contig7851 970..1041 -
1680790064.9199739-CDS-C-tenellus_contig7851:1498..18311680790064.9199739-CDS-C-tenellus_contig7851:1498..1831Choristocarpus tenellus KU2346CDSC-tenellus_contig7851 1499..1831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.9284568-UTR-C-tenellus_contig7851:1831..19281680790064.9284568-UTR-C-tenellus_contig7851:1831..1928Choristocarpus tenellus KU2346UTRC-tenellus_contig7851 1832..1928 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7851.1.1prot_C-tenellus_contig7851.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7851 76..1831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7851.1.1

>prot_C-tenellus_contig7851.1.1 ID=prot_C-tenellus_contig7851.1.1|Name=mRNA_C-tenellus_contig7851.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=170bp
MRPLRGWIACVVAVVFPLLVQGDVEQKKILLFQAIDTVSAEDVGAGGSCE
QGCHREAVHAIASFPQKEPVEGCQVRAHNFALDYGSGENISSATLDVVHS
CTGVNGTVYPQGSHDCVYGVCADFSWSSNGEVEYKVIVTHVEDRGPHTVT
LDVFLNFGHYEEDGEDKNDD
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mRNA from alignment at C-tenellus_contig7851:76..1928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7851.1.1 ID=mRNA_C-tenellus_contig7851.1.1|Name=mRNA_C-tenellus_contig7851.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1853bp|location=Sequence derived from alignment at C-tenellus_contig7851:76..1928- (Choristocarpus tenellus KU2346)
ACGACCCAGTTAACTTTGACTTCACAGCAATTTTTTCGTAGACTACGTAT
CGCATGGTCCACCCCATTCGCTTTGGGCAGCGATAGGGCGTGAGACCATG
CGCCCACTAAGAGGATGGATTGCTTGTGTGGTGGCTGTGGTATTCCCTTT
GCTTGTTCAAGGCGATGTAGAGCAAAAGAAGATCTTGCTATTTCAGGCAA
TAGACACTGTGTCAGCAGAAGATGTCGGGGCTGGGGGGTCCTGTGAGCAG
GGATGTCATCGGGAAGCCGTTCATGCCATTGCAAGTTTTCCTCAGAAAGA
ACCCGTGGAAGGATGTCAAGTGCGAGCACACAATTTTGCTTTGGACTATG
GCTCAGGAGAAAATATTTCTTCGGCTACCCTGGATGTTGTGCATTCATGT
ACTGGGGTGAACGGGACTGTCTATCCACAGGTGACAATCGGTAATGTGAC
ATGGTTGTTGTGATCCGATACTTCTACTTCTTAATCAACACCCTTTTTCC
AAAGGTAAACACCCTTCTAGGGTAGGTAATTTGAACCGCAGCGTTCTTGG
GGTGCAGTACTTGCAGACCCATTCCTTTATCTCTGATGAGCCTTTGGAAG
TGTCGACATTGGCAGTCTCTGATGTGTGCGCCCATCCGAAACAAGCTATA
TTTTACGCTTACCCCACTCGCGATTTGTAGTCCATCCAAGCTGCAACGTC
GCCTGGACTGTGACGGACTTCGGACCTAATAGCGATTTGACGACCTCTCT
GCTGCATGATTTTACGTGGTTTGTGGTCGGTTGTAATTATCTAATGTGAA
AGTTTTGTGTGTAACATACTAGCCTACCCCACCACATCGTATGCCCAACT
ATTTGTGGCTATGCTGGTTTCTTGCTCGCCATCTCAGGGATCGCATGATT
GTGTCTACGGAGTTTGCGCCGATTTTTCGTGGTCATCTAATGGCGAGGTT
GAATATAAGGTAAGAAATAATCAGGCGGAGACTTTATTTGGCGAGTGAAA
ACCCCGACCTCCTTGTGTGGTGCACTCCTCAAATGTGGGAGGGATCTGAG
ACCACCAGAAACACCTGTGGTGCATTTATTAGTCCTTCGTAATAAATTGA
TGTAATGCCCGTTTCTTCCACTCAACAGTACGTGGGTCCATGCCACTACG
TCGAGAGCTTGTACCTGTTGGTCAGTCTCGTCCCTTGTGCGATCCAATCC
CATTATCACTTCATCCTTTATTATTCTTGAGTGTTTCTTTTTCACCTAAC
ACTCTAATGATGATATGATTTCGGTTCAGAAAGTTCCAAGCCTGAAGGCA
CAATGCAAAAAAGACGAGTGATGTCAAGAAAATGAGGTGGTTGTATATAC
AACTTGAAAAAGAATCGATTCTGCAGACTCCATGTTACACTTTTGTAATG
TCTCTTTTATCCCTAACCCTTAGCACGACTTCAGCTTCCACTTGATGGGT
TTAAAAGTATAGGTAAGATACAGCTGTAGGCTGCATTACCAAAAGTATGG
ATAAGATATGATCCTATCACACTCTGAGGTCAGAGTAACAACCCCCACTA
TTGAATATTAAAGCCTTGATGAACATGAGTACTGATCCCCCACTATTGTG
CTACTCTTCTCTCCAATCCTATCCCTACGGCACCCCTTTCTTGGTGTCCT
TACAATATATTTTTCGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTAA
AAAAAAAAAAAAAAATGTCTTGAATTTGTTCGAAATTCGATTGAATAGGT
TATTGTAACGCATGTGGAGGACCGAGGCCCTCATACTGTCACTTTAGATG
TCTTCCTCAACTTTGGGCATTACGAGGAGGATGGTGAAGACAAAAATGAT
GAC
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Coding sequence (CDS) from alignment at C-tenellus_contig7851:76..1928-

>mRNA_C-tenellus_contig7851.1.1 ID=mRNA_C-tenellus_contig7851.1.1|Name=mRNA_C-tenellus_contig7851.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=510bp|location=Sequence derived from alignment at C-tenellus_contig7851:76..1928- (Choristocarpus tenellus KU2346)
ATGCGCCCACTAAGAGGATGGATTGCTTGTGTGGTGGCTGTGGTATTCCC
TTTGCTTGTTCAAGGCGATGTAGAGCAAAAGAAGATCTTGCTATTTCAGG
CAATAGACACTGTGTCAGCAGAAGATGTCGGGGCTGGGGGGTCCTGTGAG
CAGGGATGTCATCGGGAAGCCGTTCATGCCATTGCAAGTTTTCCTCAGAA
AGAACCCGTGGAAGGATGTCAAGTGCGAGCACACAATTTTGCTTTGGACT
ATGGCTCAGGAGAAAATATTTCTTCGGCTACCCTGGATGTTGTGCATTCA
TGTACTGGGGTGAACGGGACTGTCTATCCACAGGGATCGCATGATTGTGT
CTACGGAGTTTGCGCCGATTTTTCGTGGTCATCTAATGGCGAGGTTGAAT
ATAAGGTTATTGTAACGCATGTGGAGGACCGAGGCCCTCATACTGTCACT
TTAGATGTCTTCCTCAACTTTGGGCATTACGAGGAGGATGGTGAAGACAA
AAATGATGAC
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