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Homology
BLAST of mRNA_C-tenellus_contig7845.1.1 vs. uniprot
Match: D8LSP7_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP7_ECTSI) HSP 1 Score: 135 bits (339), Expect = 1.060e-28 Identity = 108/287 (37.63%), Postives = 146/287 (50.87%), Query Frame = 2
Query: 887 DHPPNIFIFPFRRVDVPGFVTKVKNLSSTAKLIGE----DLDPFLVESAKAMEAEGDLEDNNSRGNTRYT--STPESTTP-WGGVLEEATADNFSERLCPEEGARLCAVFLLDRLGEGHEAALEAAQEAVAKAVNEPGGENMLTFSWIDTPCQAGFADAVGLTDASAIPGLVVFSPRRLRLSRFLGAWESESMSRFLGGVLGGRVSTHPIS-QQPRLEEDNGCSSRQLP--VQGGAEEGSTVQDSSEED--MEAFMAEIRAEEERAQKELAEEVERELKELQDAEAA 1711
DH + +D F+ + +S+TAKL E L+ FL E + EA + G + T PE T W V E L VF LDR E + L AA+EA KA GG + F W D PCQ GFA +G++DAS +P LV FS + + +RF+GAWE++S+ FLG LGGRV P+ + PR +E C+ R P + GG G D++EED M FMAEI AEE +A++EL EEV R L+E++DA+ A
Sbjct: 572 DHVSEFIMSHLSSLDTSAFLLHAREMSATAKLNRERLPVQLERFLNEFGGSEEAGSTSSQGSGDGASAATFKGVPEVTPELWASVTGEGAGGGNPLTL---------GVFFLDRFSERFASDLRAAEEAAEKATARLGGGG-IAFVWADAPCQEGFAKTLGVSDASEVPVLVAFSSKHKKSTRFVGAWEADSLGTFLGRALGGRVPLFPVDGEAPRPDESVDCAQRPPPAWLAGG---GEGTGDAAEEDDGMGDFMAEILAEEAKAKRELEEEVARGLQEMEDAKGA 845
BLAST of mRNA_C-tenellus_contig7845.1.1 vs. uniprot
Match: A0A835YSS6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS6_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 4.120e-5 Identity = 49/183 (26.78%), Postives = 81/183 (44.26%), Query Frame = 2
Query: 1121 LEEATADNFSERLCPEEGARLCAVFLLDRLGEGHEAALEAAQEAVAKAVNE-----PGGENMLTFSWIDTPCQAGFADAVG----LTDASAIPGLVVFSPRRLRLSRFLGAWESESMSRFLGGVLGGRVSTHPISQQPRLEEDNGCSSRQLPVQGGAEEGSTVQDSSEEDMEAFMAEIRAEEE 1642
L E TAD++ + +C LC + L+ +A AV + + P G N +++ CQ F +G L + +P ++V+ P+R R+S +G +E E++ FL V + S+ + Q P + N C+ L ++ T + E DM MAEI EEE
Sbjct: 443 LVEITADSWEKDVCLPNQTSLCIIALVPTASADTQAKAADPLMAVTEVLQNTIPLRPDGSNPWQVAFVRADCQPEFVAGLGFQADLFSSGTLPSMLVYIPKRSRVSHLVGHFEKEAVRSFLSDVFSSKASSSVLHQIPAPVKRN-CTDFMLEMR------ITAGEEDEGDMADMMAEILKEEE 618
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Seed ortholog | 946362.XP_004994617.1 |
PFAMs | Thioredoxin |
Model size | 2752 |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K09584 |
KEGG Pathway | ko04141,map04141 |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Evalue | 2.72e-12 |
EggNOG OGs | 28P21@1|root,2QVNH@2759|Eukaryota |
Ec32 ortholog description | Thioredoxin-like fold |
Ec32 ortholog | Ec-15_003070.1 |
EC | 5.3.4.1 |
Cds size | 777 |
BRITE | ko00000,ko00001,ko01000,ko03110,ko04131 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790064.4075892-UTR-C-tenellus_contig7845:62..1089 | 1680790064.4075892-UTR-C-tenellus_contig7845:62..1089 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig7845 63..1089 + |
1680790064.4768174-UTR-C-tenellus_contig7845:5643..6591 | 1680790064.4768174-UTR-C-tenellus_contig7845:5643..6591 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig7845 5644..6591 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790064.4231942-CDS-C-tenellus_contig7845:1089..1101 | 1680790064.4231942-CDS-C-tenellus_contig7845:1089..1101 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7845 1090..1101 + |
1680790064.4324586-CDS-C-tenellus_contig7845:1701..2025 | 1680790064.4324586-CDS-C-tenellus_contig7845:1701..2025 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7845 1702..2025 + |
1680790064.4414499-CDS-C-tenellus_contig7845:3160..3306 | 1680790064.4414499-CDS-C-tenellus_contig7845:3160..3306 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7845 3161..3306 + |
1680790064.4503899-CDS-C-tenellus_contig7845:4375..4505 | 1680790064.4503899-CDS-C-tenellus_contig7845:4375..4505 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7845 4376..4505 + |
1680790064.4618268-CDS-C-tenellus_contig7845:5478..5643 | 1680790064.4618268-CDS-C-tenellus_contig7845:5478..5643 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7845 5479..5643 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7845.1.1 >prot_C-tenellus_contig7845.1.1 ID=prot_C-tenellus_contig7845.1.1|Name=mRNA_C-tenellus_contig7845.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=259bp
MEAEGDLEDNNSRGNTRYTSTPESTTPWGGVLEEATADNFSERLCPEEGA RLCAVFLLDRLGEGHEAALEAAQEAVAKAVNEPGGENMLTFSWIDTPCQA GFADAVGLTDASAIPGLVVFSPRRLRLSRFLGAWESESMSRFLGGVLGGR VSTHPISQQPRLEEDNGCSSRQLPVQGGAEEGSTVQDSSEEDMEAFMAEI RAEEERAQKELAEEVERELKELQDAEAASAAEGDKPKKRTKIIKRRKKKG SKTAGGEL* back to topmRNA from alignment at C-tenellus_contig7845:63..6591+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig7845.1.1 ID=mRNA_C-tenellus_contig7845.1.1|Name=mRNA_C-tenellus_contig7845.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=6529bp|location=Sequence derived from alignment at C-tenellus_contig7845:63..6591+ (Choristocarpus tenellus KU2346) TATTATTGTTGTGAAGTAGAGTTCTTGTTTTGTAATATTTTTGTTGTTTT
GTCCTCTTGGGTCAGAAATAAATAAAAAAAGAAGAAATGCAGTCACTTGC
ATTTGTGAGTTGTCCGTGTCTAATTTTATTTTTCATCTTTACAAGTCTGT
TTGGAATGAAGGCGACCAAAAATATAGCGAGACATGGAGCAAAGGTTCCT
TTTTGTAATGTACAGTATGGCGTGTTTTTTGGGCAATACTGGGGATCTTC
GCAATGCTACCATATATGCCTCTGGATTAGTATGGGTCTTATCATGGGGG
AAACCCTGGCAAGGTTACCGATCTTTGAGGTACCATGTCAGCCGGCATTA
CATTGTTTTAACCCATATTTCGTACACTTTTGTGAATATGTTGAACCACA
TACACCACAGATACAGGTGAGTAGGAGGATCCTGATGGCATATCTGTGTG
GTGGGGAAGACTTATCTGTAGGGGTAGGTGTTCTAGGATACATATATGCA
TATATATATACTTGTACTATATGCACGCATATGTATCTTATACTTCAGTC
CTTGCATCTGTGTTTTTAAGGATGTTGCTAGTGTAACACATACATAATAT
GTTATATTCACATGGACAGTCGTATGTACTTGGAATAACTTTGCTGGTGT
CACCCTCATTTTGTATACTTATATTTATTATGTGCACATGTGTATGCTTC
TAAGCATACATTAGATTCTGGAGTATTTAACTGTTGTCACACCAAGTTAT
GTACGGACGCATCTACATGTGCTTCTGAGTATATAATTCATCCCAGATAA
TTTGTTATTCACACTAATGGTACATACATACATACACACATGTATGTGTA
GATATAATAGAGTTTTCTTATTATTTTTTTTTACCTGACCACCCCCCCAA
CATTTTTATTTTTCCTTTCAGGAGAGTTGATGTGCCTGGATTTGTGACCA
AGGTGAAGAATCTATCATCTACTGCGAAGCTGATTGGTGAGGACCTAGAC
CCCTTCTTGGTGGAATCAGCCAAGGCAATGGAGGCAGAGGTCAGCTAAGG
CAACAATCCAGTCTTGTCCCACTTCTAGTATAGTCTATGGTAGTGTTAGA
GTCAAAGTACCCAAGTGGAGGGAGGTGTTTAAACCATTTTGGATTTTCGA
GGTGTTTAGAGCTCTCTTTTAAGAAGAAAATGAAAATACTCTAAAAATAA
TGTGAGGATAACTTTCTTTAGAAAAGTTAATGTACGCTAAGAAATAGCTT
ATATTCAGTCCACTAGCTGTAGAGTACTGTACACTACAACAACATGATAC
CACTAGATTCGTCAGAGGGGCCCTTTTAAAACACCTTCACATCACCCCCC
TCTCAGGTACTTGACTCACCTCCTGATTCAGTATTCACTCTTAACTCACA
CTTTCTCTGGGAAATATTAAGGACCTAAATCACTCATCACCCAGCAGCAG
ACTACATCATCATCGTAATTTGAGTCAATGACGGGGTGTCTTCAATACCT
CCCCCCCGCCTTCATCTGCATTCAACTATCCTTCCAAATCACTCCCCACT
ACCCCCTACCCCACCCCTCTCAACCCCCCTGGAACCTGACTTGCCACTGC
CAACCCTCCTCCATCACTATACCTTATACTGTCAAAAAGGGAGACTTGGA
AGACAACAATAGCCGCGGCAACACCAGGTATACCTCCACCCCAGAAAGCA
CAACACCTTGGGGTGGTGTGTTGGAGGAAGCTACAGCAGATAACTTTTCT
GAGAGGCTGTGCCCTGAAGAGGGTGCTCGTCTCTGTGCCGTGTTCTTGTT
AGATCGACTGGGGGAGGGGCATGAGGCAGCCTTGGAGGCGGCTCAGGAGG
CTGTCGCGAAGGCCGTGAATGAGCCTGGTGGTGAAAATATGCTTACATTC
TCTTGGATTGATACACCTTGTCAGGCGGGATTTGCAGATGCTGTGGGACT
GACGGATGCTTCTGTGAGTGGGAGGGGGTAGTGTCTGGAGGTGGAGTAAA
ACAGTGGGGTGGATATGCCATGGACGGGGCAGCGTTTTGGATAATATTTT
TTGTTTTATGTTTTTGTTTGGGTTGGTGGGGGAGTGGTGTTGCTGTAAGA
TTTTTTTCAACCATAGAGGAAGCATAAACTATATGTAGTACATTCATGTA
TTCTGTAGTGTATAATAGACAGTATATAATAAATAGTATATAATAAATAG
TAACTTTTATGTTTTGTTGATGTTTGACTGATTTGGTGTGTCCAACTATT
TGAAGATAATTTTTTGTCCGAAAATTGGAGTTGGTCTGTTGAAATGGACC
AAAGGGCAAAGAAGGCTTTGAAGGGGGCTACTGGAGTACCTCCAAATGTT
TGTCACATACATGCAAGGTGTACCTTTTCCTGTCGTGGGACATGTTACTG
ACTAACTATACCTGTTACAACAAAGGTTTTGTTTATTTTCAGGATTTGTG
AGCATGGTGTACATTACAGAAAGCTCAAAGAGGTATTGAAACTCAAAATA
GGACAAAATCGTCCCCTCCCCAATTAGATGGTTTAACTTGTCTTTCAAAA
TGTCATACGGATTGTGGAGGCTTTGATAGTGGAGTGTATCATGTATATGG
TGGACTAGTATATCTTACATTTTTTGGCTGTGTATTCAGAAGGTTCTTAT
GTGCTGAGACGTGGTGGGGGCTTAAGGTGGAAGCCAGGGGAATTGGTGGA
AACTTTGGGCTTCTCATTTGACGTTTTTGTTTGTTTGTGATATGTTCATA
CATACATACATACATACATACATACATACATACAATGTGGAAAGAGAGAG
AGAGAGTAGTAAGGTTATCACATGTGATGCAACACACCACCAAACCTATT
TGAGATACAACACGGTACACACACACGCAACATAACACAATACAACATAA
CACACTGTTTACGCAACAAAACATAAACACGCCGTGGCCTACCTCACAAT
ACCTTTTAGCTGGCCCATGCGCTCACATGAGCGCTTTTTACCTCACCCAA
CCTCCCATCTACCTTGCTGCATCTTTCTCCTCCCCACTTCTTGCCTTTGA
CATTTATTGTTCCGTTGTTCCGTTTTGGTTTTGCTTTATCCTGGGCAGGC
GATTCCTGGTCTGGTGGTATTCTCACCGAGGAGGCTTCGCTTGTCCCGCT
TCTTGGGTGCATGGGAGTCTGAGTCAATGTCGCGGTTCTTGGGAGGTGTC
CTCGGAGGGCGTGTGTCCACTCACCCCATCTCCCAACAACCCAGGTAATT
CCCACCTCCATCTTCTTCCTCACACACCCATGCCTTTTATATATAATACC
ACACCATGATGATCTTGTAGGCAGGGTTAGTTTCGTTTATTCTTGTGAAG
TACCAGGAGATATATTTTTTTTTGTATTTTTGGTATTGATACTCATTTTT
TTATTTGTTTGAGACCTGCATTTGTAATGTTGTTCTTCTTTTCTTCAGTG
TTTTTTTCTTTTTGAAGCAAATGTTTTTGTTGTTCAGTGTCTATCTGAAT
ATCCCGTACACGATATGATTGTGTGAAAATTCTTGAAAGTTCTTATTCAC
AAAAGGGTAGAAAGGAAGGGAGTGTCATATACCGATAGTGAAATAAATGT
AATAATAATATGGAGTATAATAACATCATAGCAATATATATATATACAAT
TTCTTCATTAAATCAAATTTAAACTGTGTGTTTTGTGGTTAACTCCTGTG
GTGGATGATGCCTACTGAGCAATCTACATATCAGAGATGGGGTAAGACTT
CTCTTGGAGAGTCTAGGTTGCTGTTTATCTCCTTGTAGCATAATGTGTTC
TAAATGAATGTTTTGAAGATGCACACAGCTTTTTTGTTATCTTTCCTGCA
CCCTGCCTCGCCATGTAAGAGTTATCATCACACTGTTAAAATAATATTAA
TAATTATGTTGCAGAAGGATGGCCCGCTCTTTAGGGTTATGGTCAGATCA
TACTCTTGTCGATCCAGACCCAATGTATGTACTGCTTAGGAGCACATTAC
AACAATATACAGTATCTAAAATATTTGATATTTATCACACTATAACATAT
TCCAAAAATGTGAGTAGTGATTTTTAGTTTGTTCTTATTATTAAAGGCGC
ATAGAGAGGGTGCGGCATGTTGAACTTGAAGTGCATTATCCTATAGTATT
GACTCTTAGTAACACATCTATTGGCAGATGTTAATCTTGTTTCATACACC
GTTTCTCACTCTATATGAAATAGTTTCGTGTATGATAATAGTAACAATAG
TAGTAGTGGTAATGGTAATGGTAATGGTGCTTTGTTCTCACCATTGGGCA
TCTGGGGGAAAAGGTTGGAAGAGGACAATGGTTGCTCCTCTCGACAGTTG
CCAGTACAAGGTGGTGCAGAAGAAGGGTCGACAGTCCAAGACTCATCAGA
GGAGGATATGGAGGCGTTCATGGCAGAGATCCGGGCTGAAGAGGTGTGTA
GTTTCACCTTTTTTGTGTTGCCTTTGGCGACCAGGTGTGCATATAGATGT
TGGTAGGCGATGACGTCCAGCGCATACTTCAGTTGTAAATATATTTGGGA
ATCGTGAGCAATGCATTTTCTTTCATCAGTACTATATTTGTGGCAGGGTG
ATTCATTTATGGGTTAGGGGTATTGGCTGTGTGGAAATAACTAAAGGCTT
GTGGGGTGCCCAATGTAGATATGTCAAGACACTGCATTGATAGGTGTGAG
GTCTCTGAGTGAGTGTGTGTGTATGTACACTGTTCTGACATCGCTAGTGA
GTGTGAAAACCTAACCGGTGGACAAAAATGTGCACTTCACAACAAGTAGC
TGAATGACTGATTTGAGAGGTGAAATTGCTTCATCTCTCCTCGAGTCTTC
TCTGAATTCCCCAAATGGTTCTTGCAAAAATTAGGAGGAGTCAGTGCAAT
CTGCCTTTTTGTCGTTTCGTTAGGTATTGGTGGTATTCAAGTATTAAAAC
CATGTGGGGGATGAGAAAAATGCACATTAAAATGGCATGGTTTTGGAGTG
TACAAAGAAGAAAGATGTATGCGTTGGTTCAATGCTTGGAGGGTGTACTG
TTAGTACTTGCAATTTATACTATATCACTATAGTGGTCCACGTAATTGTT
TTCTTACTGGGTTTTGCTTCATTCTAATGAGATGGTTGTAGTACGTCACT
ATGTACAAAATACAAATTGTTGTGTTGTTATTTTGGCATAGTTAAGGTAT
GTATCACTCATCATACCTCCTTGGTGATGTTAGTGATGACCAGCTTTGTT
TAGAATTCCATTTCTGTGTTTTGACGATTCATGTGAGCATATATTATCTG
GACCCATGGTTTACTTTTGTTCGTGCATTATCCAACCAATGTTTTTATGG
CTGTATTTCCGTTTCATTTAATGATGTACCATGTCGGGGGGGGTTGTACA
AAAATCTAATATCCAGGAGAGAGCGCAAAAAGAACTTGCAGAGGAAGTTG
AAAGGGAGCTCAAGGAGTTACAGGACGCTGAGGCAGCATCTGCAGCAGAG
GGAGACAAGCCCAAGAAGCGCACCAAGATCATCAAGAGGAGGAAGAAGAA
AGGGTCCAAGACTGCTGGAGGGGAGCTGTAACCCAACGACCAAAGGATCC
ACCTCATTGACCGTTTTTTTCTCCAACATAGTATCTGGCTGAACTACGGA
TCAACATGTGCCATCTACCTGACTCCAGTGATACAGACAAAATGATATAT
ACCTGTGGGTAGATAATCGAGTACAAACAGACGCTGGGCATTCTTACAGT
TGTGTGACCAGTTTGGGTAGCTCCCATGTATTTGTACACTAATATTATTG
TGCATTTCTTATTATTTGATGATCAGTGCAGGGAGAGTGGACTTGGGATG
GGGGAAAGTGGTGGAAAATATGGTAGCAATTGTCTTAGGACGTTATGAGG
AGATTTTCTATCTGGCATTGGAATTGCTTGGTTCTAGGCATCCCTGTCCC
TCTCTTCATCTATCTGACCAGAGGATAGCTGAAGCAAATGTAAATGTGCT
TGGCAGGTTGCACTTGACACAACTGTTTTTTCCAGCAATGTTTTATTTCC
TACATTATTTTATTGTCTTGAATGTTCGCCATAATCTCATCATCTGCTAA
AGGACCATCTTAGGGGCTAGATTAGGGAGGCATCATGATCTTGTGTTGAG
CAGTGTGACAAGAGGGTCAAGGTGGACCATTCTTGGCAGAGCTGATAATA
GATCGGGTTTTACAGAACAGAATGTGACCTGCCACTGCTGTTTTCTTCTT
TTGATATGTTTCTATGTGCATGCAGTTTGTGTTTGCTGCTTGTTACAGGG
AATGCATGGTTATTGACTGAACAAACGGACCCAAACCACATTAGTAGTCA
CATTTACTTGATTTTTCTTCACCGGTTGAAGTTGTGGATAATAGAGCATG
GTGATCACAACAAAGTATATCAGGTCTTATCTCTACATTCGAGGGGCAAC
TATCTATTGTAACAGCCGATTTCAAAAATTGAGGATGGAGCTTTTCATTG
AGGATGGGCTTGACCCAAAATTGACTGGG back to topCoding sequence (CDS) from alignment at C-tenellus_contig7845:63..6591+ >mRNA_C-tenellus_contig7845.1.1 ID=mRNA_C-tenellus_contig7845.1.1|Name=mRNA_C-tenellus_contig7845.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=777bp|location=Sequence derived from alignment at C-tenellus_contig7845:63..6591+ (Choristocarpus tenellus KU2346) ATGGAGGCAGAGGGAGACTTGGAAGACAACAATAGCCGCGGCAACACCAG GTATACCTCCACCCCAGAAAGCACAACACCTTGGGGTGGTGTGTTGGAGG AAGCTACAGCAGATAACTTTTCTGAGAGGCTGTGCCCTGAAGAGGGTGCT CGTCTCTGTGCCGTGTTCTTGTTAGATCGACTGGGGGAGGGGCATGAGGC AGCCTTGGAGGCGGCTCAGGAGGCTGTCGCGAAGGCCGTGAATGAGCCTG GTGGTGAAAATATGCTTACATTCTCTTGGATTGATACACCTTGTCAGGCG GGATTTGCAGATGCTGTGGGACTGACGGATGCTTCTGCGATTCCTGGTCT GGTGGTATTCTCACCGAGGAGGCTTCGCTTGTCCCGCTTCTTGGGTGCAT GGGAGTCTGAGTCAATGTCGCGGTTCTTGGGAGGTGTCCTCGGAGGGCGT GTGTCCACTCACCCCATCTCCCAACAACCCAGGTTGGAAGAGGACAATGG TTGCTCCTCTCGACAGTTGCCAGTACAAGGTGGTGCAGAAGAAGGGTCGA CAGTCCAAGACTCATCAGAGGAGGATATGGAGGCGTTCATGGCAGAGATC CGGGCTGAAGAGGAGAGAGCGCAAAAAGAACTTGCAGAGGAAGTTGAAAG GGAGCTCAAGGAGTTACAGGACGCTGAGGCAGCATCTGCAGCAGAGGGAG ACAAGCCCAAGAAGCGCACCAAGATCATCAAGAGGAGGAAGAAGAAAGGG TCCAAGACTGCTGGAGGGGAGCTGTAA back to top
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