mRNA_C-tenellus_contig7844.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7844.2.1
Unique NamemRNA_C-tenellus_contig7844.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: D8LT25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT25_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.720e-38
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEVFE 213
            +RPI+WANRP SYL RTEVWDEYPNGRWGDGRSPAFG+LSDTHFFR  +G++EDRKAMWGEAPI P E+FE
Sbjct:   49 VRPINWANRPRSYLARTEVWDEYPNGRWGDGRSPAFGELSDTHFFRPLVGSREDRKAMWGEAPIVPGEIFE 119          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A6H5KKX8_9PHAE (Methylenetetrahydrofolate reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.540e-37
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEVFE 213
            +RPI+WANRP SYL RTEVWDEYPNGRWGDGRSPAFG+LSDTHFFR  +GT+EDRKAMWGEAPI P E+FE
Sbjct:  334 VRPINWANRPRSYLARTEVWDEYPNGRWGDGRSPAFGELSDTHFFRPLVGTREDRKAMWGEAPIVPGEIFE 404          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A835YII2_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YII2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.540e-35
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEVFE 213
            +RPIHWANRPHSY+ RTEVWDE+PNGRWGDGRSPAFG LSD+HF+RFA G++EDR+ +WGEAPI   E++E
Sbjct:  318 VRPIHWANRPHSYIARTEVWDEFPNGRWGDGRSPAFGQLSDSHFYRFAAGSREDRRGLWGEAPIEESEIYE 388          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: W7TSL1_9STRA (Methylenetetrahydrofolate reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSL1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.420e-30
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEVFE 213
            +RPI+WANRP SYL RTE WDE+PNGRWGDGRSPAFG+LSD  F   +LG++EDR+AMWGEAP+   EVFE
Sbjct:  340 VRPINWANRPKSYLSRTEEWDEFPNGRWGDGRSPAFGELSDYQFVDTSLGSREDRRAMWGEAPLKDVEVFE 410          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A482SR19_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SR19_9ARCH)

HSP 1 Score: 111 bits (277), Expect = 4.580e-30
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEVFE 213
            +RPI+WANRP SY+KRT  WD+YPNGRWGD RSPA+G+LSD+HFFR   G KED  AMWG   ++ E+V+E
Sbjct:   42 VRPINWANRPKSYIKRTVNWDDYPNGRWGDNRSPAYGELSDSHFFRPVEGKKEDLIAMWGSVLVSEEDVYE 112          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A7S4DAI7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAI7_HETAK)

HSP 1 Score: 112 bits (281), Expect = 1.010e-28
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEVFE 213
            +RPI+WANRP SY++RT  WDE+PNGRWGD  SPAFG+L+DTHF  F + + EDRKAMWGEAP  P EV+E
Sbjct:   24 VRPINWANRPKSYVQRTLGWDEFPNGRWGDLTSPAFGELTDTHFADFPVSSVEDRKAMWGEAPQGPAEVYE 94          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A7S1C7M9_9STRA (Methylenetetrahydrofolate reductase (NAD(P)H) (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7M9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.950e-28
Identity = 42/70 (60.00%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEVF 210
            +RPI+WANRP SYL RT  WDEYPNGRWGD RSPA+G++S++HF+  A+G+  +R+  WGEAP+T ++V+
Sbjct:  268 VRPIYWANRPRSYLSRTATWDEYPNGRWGDARSPAYGEISESHFYAVAVGSVAERRVAWGEAPLTHDDVY 337          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A812SXV5_SYMMI (Methylenetetrahydrofolate reductase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SXV5_SYMMI)

HSP 1 Score: 111 bits (278), Expect = 3.600e-27
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEV 207
            +RPI+WANRP SY+ RT  WDEYPNGRWGD RSPAFG+LS++HFF   + +KEDR  MWGEAP++ EE+
Sbjct:  241 VRPINWANRPKSYIARTMGWDEYPNGRWGDSRSPAFGELSNSHFFGTTVCSKEDRLTMWGEAPLSAEEL 309          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A7S2UM56_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM56_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.290e-26
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSD-THFFRFALGTKEDRKAMWGEAPITPEEVFE 213
            +RPI+WANRP SY+ RTE WDE+PNGRWGD  SPAFG+LSD +HF+ F LG+++DR+AM GE P    +V+E
Sbjct:   61 IRPINWANRPKSYVMRTEDWDEFPNGRWGDATSPAFGELSDLSHFYSFTLGSEDDRRAMLGETPTQFSDVYE 132          
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Match: A0A662WW66_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW66_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.840e-26
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALGTKEDRKAMWGEAPITPEEV 207
            +RPI+W+NRP SY+ RT +WDEYPNGRWG+  SPAFG+LS++HF      T  DR+AMWGEAP T E+V
Sbjct:   22 VRPIYWSNRPKSYVHRTAMWDEYPNGRWGNSESPAFGELSESHFAASTAVTPSDRRAMWGEAPATKEDV 90          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7844.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT25_ECTSI3.720e-3881.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKX8_9PHAE4.540e-3783.10Methylenetetrahydrofolate reductase n=1 Tax=Ectoca... [more]
A0A835YII2_9STRA1.540e-3574.65Methylenetetrahydrofolate reductase n=1 Tax=Tribon... [more]
W7TSL1_9STRA3.420e-3071.83Methylenetetrahydrofolate reductase n=2 Tax=Monodo... [more]
A0A482SR19_9ARCH4.580e-3064.79Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4DAI7_HETAK1.010e-2867.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1C7M9_9STRA2.950e-2860.00Methylenetetrahydrofolate reductase (NAD(P)H) (Fra... [more]
A0A812SXV5_SYMMI3.600e-2766.67Methylenetetrahydrofolate reductase n=1 Tax=Symbio... [more]
A0A7S2UM56_9STRA2.290e-2662.50Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A662WW66_9STRA2.840e-2662.32Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7844contigC-tenellus_contig7844:4962..5560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LT25
Preferred nameMTHFR1
PFAMsMTHFR
Model size213
Max annot lvl2759|Eukaryota
KEGG rclassRC00081
KEGG koko:K00297,ko:K10901
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,ko03440,ko03460,map00670,map00720,map01100,map01120,map01200,map01523,map03440,map03460
KEGG ModuleM00295,M00377,M00414
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Exons2
Evalue6.11e-39
EggNOG OGsCOG0685@1|root,KOG0564@2759|Eukaryota
Ec32 ortholog descriptionmethylenetetrahydrofolate reductase
Ec32 orthologEc-08_003880.1
EC1.5.1.20,3.6.4.12
Descriptionmethylenetetrahydrofolate reductase (NAD(P)H) activity
Cds size213
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790064.3555596-CDS-C-tenellus_contig7844:4961..50791680790064.3555596-CDS-C-tenellus_contig7844:4961..5079Choristocarpus tenellus KU2346CDSC-tenellus_contig7844 4962..5079 -
1680790064.3748174-CDS-C-tenellus_contig7844:5465..55601680790064.3748174-CDS-C-tenellus_contig7844:5465..5560Choristocarpus tenellus KU2346CDSC-tenellus_contig7844 5466..5560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7844.2.1prot_C-tenellus_contig7844.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7844 4962..5560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7844.2.1

>prot_C-tenellus_contig7844.2.1 ID=prot_C-tenellus_contig7844.2.1|Name=mRNA_C-tenellus_contig7844.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
LRPIHWANRPHSYLKRTEVWDEYPNGRWGDGRSPAFGDLSDTHFFRFALG
TKEDRKAMWGEAPITPEEVFE
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mRNA from alignment at C-tenellus_contig7844:4962..5560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7844.2.1 ID=mRNA_C-tenellus_contig7844.2.1|Name=mRNA_C-tenellus_contig7844.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=599bp|location=Sequence derived from alignment at C-tenellus_contig7844:4962..5560- (Choristocarpus tenellus KU2346)
CTCAGGCCTATCCACTGGGCCAACCGCCCTCACAGCTATCTCAAGCGCAC TGAAGTGTGGGATGAGTATCCCAATGGACGTTGGGGAGACGGAAGGTGAC CTGACTGCATAATGTCAATGTCTTGGCATTACCAACCAATACACATTACC AACCAATAAACACACCACACTGATGCACACATATGCACCTAGGATACAAA TACCCACTCTCTTGTTGCAGCTTTGATGCATAGATAAACGGGATTAGTGC TTTCCAACTTAATAATAATAATAATAATAATTGAATGCCGTACAGCACCC AAGTAACTCTGTATTTTGTAGAGGAACTGACCTGTACACGCCAGTTGTGT GTGTATCTCATGGGAAACAAGAACATGGCGTTTGGTTTAACTCTTTAAAT AAATGACCCGCTTAACTCTTTATGTTTGATTGTGTAATATCCCCTCTCAT GTCCATTACTTGTATATTTAATCTTGTGCAGGAGTCCCGCATTTGGGGAT TTGAGTGACACACACTTTTTCAGATTCGCATTGGGCACCAAGGAAGACCG TAAGGCTATGTGGGGGGAAGCACCCATAACCCCAGAGGAGGTTTTTGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7844:4962..5560-

>mRNA_C-tenellus_contig7844.2.1 ID=mRNA_C-tenellus_contig7844.2.1|Name=mRNA_C-tenellus_contig7844.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=213bp|location=Sequence derived from alignment at C-tenellus_contig7844:4962..5560- (Choristocarpus tenellus KU2346)
CTCAGGCCTATCCACTGGGCCAACCGCCCTCACAGCTATCTCAAGCGCAC
TGAAGTGTGGGATGAGTATCCCAATGGACGTTGGGGAGACGGAAGGAGTC
CCGCATTTGGGGATTTGAGTGACACACACTTTTTCAGATTCGCATTGGGC
ACCAAGGAAGACCGTAAGGCTATGTGGGGGGAAGCACCCATAACCCCAGA
GGAGGTTTTTGAG
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