mRNA_C-tenellus_contig7830.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7830.1.1
Unique NamemRNA_C-tenellus_contig7830.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: C1MT94_MICPC (SNF2 super family (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT94_MICPC)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NPAVE+QA+DRVHRLGQT  VTV RF   DT+E+KMLELQ
Sbjct:  772 NPAVEEQAMDRVHRLGQTKDVTVVRFAATDTIEEKMLELQ 811
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NP VEDQAIDRVHRLGQT  V VKR+VV DTVED +L+LQ
Sbjct: 1020 NPGVEDQAIDRVHRLGQTRDVIVKRYVVEDTVEDMILQLQ 1059
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NPAVE+QAIDR+HRLGQ   V+VKRFVV+ TVEDKML LQ
Sbjct: 1545 NPAVEEQAIDRIHRLGQLNEVSVKRFVVSGTVEDKMLALQ 1584
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: H3GRS2_PHYRM (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRS2_PHYRM)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NP VEDQA+DRVHRLGQT  V VKR+VV DTVED +L+LQ
Sbjct:  994 NPGVEDQAVDRVHRLGQTQDVIVKRYVVEDTVEDMILQLQ 1033
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A6A3Z681_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z681_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NP VEDQA+DRVHRLGQT  V VKR+VV DTVED +L+LQ
Sbjct: 1016 NPGVEDQAVDRVHRLGQTQDVIVKRYVVQDTVEDMILQLQ 1055
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A2K1IG02_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IG02_PHYPA)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NPAVE+QA+DRVHRLGQT  VTV R +V DT+ED++LELQ
Sbjct:  810 NPAVEEQAMDRVHRLGQTRDVTVVRLIVTDTIEDRILELQ 849
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A662XF88_9STRA (RanBP-type and C3HC4-type zinc finger-containing protein 1 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XF88_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NP VE+QA+DRVHRLGQT  V VKR+VV+DTVED +L+LQ
Sbjct:  995 NPGVEEQAVDRVHRLGQTRDVLVKRYVVSDTVEDMLLQLQ 1034
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A662Y6B2_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6B2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NP VE+QA+DRVHRLGQT  V V+R+VV+DTVED ML+LQ
Sbjct: 1014 NPGVEEQAVDRVHRLGQTQDVLVRRYVVSDTVEDMMLQLQ 1053
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BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A3F2RHC6_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RHC6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.140e-9
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NP VE+QAIDRVHRLGQT  V VKR+VV DTVED +L+LQ
Sbjct:  165 NPGVEEQAIDRVHRLGQTRDVMVKRYVVNDTVEDMILQLQ 204
[Close]
BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Match: A0A2P4YH81_9STRA (DNA repair protein RAD5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, p n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YH81_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.200e-9
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQ 120
            NP VE+QAIDRVHRLGQT  V VKR+VV DTVED +L+LQ
Sbjct:  172 NPGVEEQAIDRVHRLGQTQDVIVKRYVVNDTVEDMILQLQ 211
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7830.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1MT94_MICPC4.180e-1075.00SNF2 super family (Fragment) n=1 Tax=Micromonas pu... [more]
A0A8K1CQ45_PYTOL4.180e-1077.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6H5KHD4_9PHAE4.180e-1077.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3GRS2_PHYRM5.710e-1075.00RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A6A3Z681_9STRA5.710e-1075.00RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A2K1IG02_PHYPA7.810e-1072.50Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A662XF88_9STRA7.810e-1072.50RanBP-type and C3HC4-type zinc finger-containing p... [more]
A0A662Y6B2_9STRA7.810e-1072.50Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3F2RHC6_9STRA1.140e-975.00Helicase C-terminal domain-containing protein n=1 ... [more]
A0A2P4YH81_9STRA1.200e-975.00DNA repair protein RAD5, SWI/SNF-related matrix-as... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7830contigC-tenellus_contig7830:446..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog38833.XP_003058824.1
PFAMsHIRAN,Helicase_C,SNF2_N,zf-C3HC4_2,zf-C3HC4_3
Model size144
Max annot lvl3041|Chlorophyta
KEGG koko:K15711
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.85e-11
EggNOG OGsCOG0553@1|root,KOG1001@2759|Eukaryota,37IVF@33090|Viridiplantae,34K26@3041|Chlorophyta
EC2.3.2.27
Descriptionto the SMARCA3 class of proteins in the SNF2 superfamily of ATP dependent helicases. ChromDB ID
Cds size144
COG categoryA
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790063.2028756-CDS-C-tenellus_contig7830:445..5891680790063.2028756-CDS-C-tenellus_contig7830:445..589Choristocarpus tenellus KU2346CDSC-tenellus_contig7830 446..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7830.1.1prot_C-tenellus_contig7830.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7830 446..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7830.1.1

>prot_C-tenellus_contig7830.1.1 ID=prot_C-tenellus_contig7830.1.1|Name=mRNA_C-tenellus_contig7830.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=48bp
NPAVEDQAIDRVHRLGQTLAVTVKRFVVADTVEDKMLELQVGTVLIC*
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mRNA from alignment at C-tenellus_contig7830:446..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7830.1.1 ID=mRNA_C-tenellus_contig7830.1.1|Name=mRNA_C-tenellus_contig7830.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=144bp|location=Sequence derived from alignment at C-tenellus_contig7830:446..589+ (Choristocarpus tenellus KU2346)
AACCCTGCTGTGGAGGACCAAGCTATCGACCGTGTGCATAGGCTGGGCCA
GACCTTAGCTGTAACTGTGAAGAGATTTGTTGTGGCGGACACTGTGGAGG
ACAAGATGCTTGAATTGCAGGTAGGTACTGTTTTGATTTGTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7830:446..589+

>mRNA_C-tenellus_contig7830.1.1 ID=mRNA_C-tenellus_contig7830.1.1|Name=mRNA_C-tenellus_contig7830.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=144bp|location=Sequence derived from alignment at C-tenellus_contig7830:446..589+ (Choristocarpus tenellus KU2346)
AACCCTGCTGTGGAGGACCAAGCTATCGACCGTGTGCATAGGCTGGGCCA
GACCTTAGCTGTAACTGTGAAGAGATTTGTTGTGGCGGACACTGTGGAGG
ACAAGATGCTTGAATTGCAGGTAGGTACTGTTTTGATTTGTTAG
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