mRNA_C-tenellus_contig7829.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7829.1.1
Unique NamemRNA_C-tenellus_contig7829.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7829.1.1 vs. uniprot
Match: D7FXX0_ECTSI (CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX0_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.660e-22
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 PGIPVVKLMHTPSLIMDNRLRGEIELCLEEDRDYSPHIDRVRRTMGAEYEFVLQQKLRAR 180
            PG  + +LM TPSLI+D RLR E+E C+ +DRDYSPH+DRVRR +GAEYEFVLQQKLRAR
Sbjct:  100 PGAAIAQLMRTPSLILDERLRREVEECISDDRDYSPHLDRVRRGVGAEYEFVLQQKLRAR 159
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BLAST of mRNA_C-tenellus_contig7829.1.1 vs. uniprot
Match: A0A0D2VQM9_CAPO3 (CDAN1-interacting nuclease 1 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VQM9_CAPO3)

HSP 1 Score: 53.5 bits (127), Expect = 9.020e-7
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   13 VVKLMHTPSLIMDNRLRGEIELCLEEDRDYSPHIDRVRRTMGAEYEFVLQQKLR 174
            V +LM  P LI D  LR E++ C++ D   SP ++RV+  +GAEYE +LQ+KLR
Sbjct:  139 VKELMQRPELIPDLVLRREVQCCIQYDDMTSPLVERVKHCVGAEYEALLQEKLR 192
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BLAST of mRNA_C-tenellus_contig7829.1.1 vs. uniprot
Match: D3BC40_POLPP (CDAN1-interacting nuclease 1 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BC40_POLPP)

HSP 1 Score: 50.4 bits (119), Expect = 1.130e-5
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   19 KLMHTPSLIMDNRLRGEIELCLEEDRDYSPHIDRVRRTMGAEYEFVLQQKL 171
            KLM TP LI + RLR  I+  +  D + SP I+ +R + G+EYEF+LQ+KL
Sbjct:   96 KLMKTPELIDNERLRVNIQQSVYSDDNCSPLINYIRSSTGSEYEFLLQEKL 146
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BLAST of mRNA_C-tenellus_contig7829.1.1 vs. uniprot
Match: UPI000719BAFE (uncharacterized protein C15orf41 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BAFE)

HSP 1 Score: 47.0 bits (110), Expect = 5.920e-5
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   19 KLMHTPSLIMDNRLRGEIELCLEEDRDYSPHIDRVRRTMGAEYEFVLQQKL 171
            ++M   + I D  L  E++LC+ ED  Y P +D +RR++G EYE+ LQ+ L
Sbjct:   38 QMMKDTATIDDPILADEVQLCVLEDAHYGPVVDSIRRSIGYEYEYKLQEIL 88
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7829.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXX0_ECTSI1.660e-2271.67CDAN1-interacting nuclease 1 n=1 Tax=Ectocarpus si... [more]
A0A0D2VQM9_CAPO39.020e-748.15CDAN1-interacting nuclease 1 n=2 Tax=Capsaspora ow... [more]
D3BC40_POLPP1.130e-549.02CDAN1-interacting nuclease 1 n=1 Tax=Polysphondyli... [more]
UPI000719BAFE5.920e-541.18uncharacterized protein C15orf41 homolog n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7829contigC-tenellus_contig7829:188..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXX0
Preferred nameC15orf41
PFAMsTPD
Model size183
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.38e-20
EggNOG OGsarCOG04990@1|root,2R9SY@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function with TPD sequence-motif
Ec32 orthologEc-16_005150.1
DescriptionProtein of unknown function TPD sequence-motif
Cds size159
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.986261-CDS-C-tenellus_contig7829:187..3461680790062.986261-CDS-C-tenellus_contig7829:187..346Choristocarpus tenellus KU2346CDSC-tenellus_contig7829 188..346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.9987178-UTR-C-tenellus_contig7829:346..3701680790062.9987178-UTR-C-tenellus_contig7829:346..370Choristocarpus tenellus KU2346UTRC-tenellus_contig7829 347..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7829.1.1prot_C-tenellus_contig7829.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7829 188..346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7829.1.1

>prot_C-tenellus_contig7829.1.1 ID=prot_C-tenellus_contig7829.1.1|Name=mRNA_C-tenellus_contig7829.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=53bp
MHTPSLIMDNRLRGEIELCLEEDRDYSPHIDRVRRTMGAEYEFVLQQKLR
AR*
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mRNA from alignment at C-tenellus_contig7829:188..370-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7829.1.1 ID=mRNA_C-tenellus_contig7829.1.1|Name=mRNA_C-tenellus_contig7829.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=183bp|location=Sequence derived from alignment at C-tenellus_contig7829:188..370- (Choristocarpus tenellus KU2346)
CCAGGGATACCTGTGGTTAAGCTCATGCACACTCCAAGTCTGATCATGGA
TAACCGCTTGAGGGGGGAAATTGAACTCTGCCTTGAGGAAGACAGAGACT
ATTCGCCCCACATTGACAGGGTTCGGAGGACCATGGGAGCGGAGTACGAG
TTTGTGCTGCAGCAAAAGCTACGGGCAAGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig7829:188..370-

>mRNA_C-tenellus_contig7829.1.1 ID=mRNA_C-tenellus_contig7829.1.1|Name=mRNA_C-tenellus_contig7829.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=159bp|location=Sequence derived from alignment at C-tenellus_contig7829:188..370- (Choristocarpus tenellus KU2346)
ATGCACACTCCAAGTCTGATCATGGATAACCGCTTGAGGGGGGAAATTGA
ACTCTGCCTTGAGGAAGACAGAGACTATTCGCCCCACATTGACAGGGTTC
GGAGGACCATGGGAGCGGAGTACGAGTTTGTGCTGCAGCAAAAGCTACGG
GCAAGGTGA
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