mRNA_C-tenellus_contig7822.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7822.1.1
Unique NamemRNA_C-tenellus_contig7822.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: D7G4L2_ECTSI (MsrB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L2_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGME+P D+FE+THN RV S +T+FGG+VSRLQV
Sbjct:  155 RPGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQV 190
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A1Y1HNB2_KLENI (NAD(P)-binding Rossmann-fold superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNB2_KLENI)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTD+++KTHN R+ +ANT FGG VS+LQV
Sbjct:  276 RPGGMERPTDDYKKTHNVRLAAANTEFGGQVSQLQV 311
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A6H5KIF4_9PHAE (MsrB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.650e-9
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    4 PGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            PGGME+P D+FE+THN RV S +T+FGG+VSRLQV
Sbjct:  267 PGGMEKPGDDFEQTHNVRVASKDTLFGGVVSRLQV 301
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A835ZI62_9STRA (Mss4-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI62_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 8.480e-9
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTDE+E THN R+   +T FGG VSRLQV
Sbjct:  132 RPGGMERPTDEYELTHNVRLARQDTFFGGQVSRLQV 167
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A8J9SPF1_9CHLO (Probable protein TIC 62, chloroplastic at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SPF1_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 3.020e-8
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTDE+++THN  +   +T+FGG VSRLQV
Sbjct:  287 RPGGMERPTDEYKRTHNVTLAPKDTLFGGQVSRLQV 322
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A6J1I5Q4_CUCMA (protein TIC 62, chloroplastic n=4 Tax=Cucurbita TaxID=3660 RepID=A0A6J1I5Q4_CUCMA)

HSP 1 Score: 56.6 bits (135), Expect = 3.030e-8
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTD F++THN  V   +T+FGGLVS LQV
Sbjct:  247 RPGGMERPTDTFKETHNTTVSPEDTLFGGLVSNLQV 282
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: M1AEX8_SOLTU (Tic62 protein n=5 Tax=Solanum TaxID=4107 RepID=M1AEX8_SOLTU)

HSP 1 Score: 56.6 bits (135), Expect = 3.040e-8
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTD F++THN  +   +T+FGGLVS LQV
Sbjct:  245 RPGGMERPTDSFKETHNITISEEDTLFGGLVSNLQV 280
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A068TP04_COFCA (NAD(P)-bd_dom domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068TP04_COFCA)

HSP 1 Score: 56.6 bits (135), Expect = 3.040e-8
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTD F++THN  V   +T+FGGLVS LQV
Sbjct:  259 RPGGMERPTDAFKETHNITVSQEDTLFGGLVSNLQV 294
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A4D9C5P5_SALSN (NAD(P)-bd_dom domain-containing protein n=7 Tax=Salvia TaxID=21880 RepID=A0A4D9C5P5_SALSN)

HSP 1 Score: 56.2 bits (134), Expect = 4.150e-8
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTD F++THN  +   +T+FGGLVS LQV
Sbjct:  295 RPGGMERPTDSFKETHNVTLSEEDTLFGGLVSNLQV 330
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BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Match: A0A2U1NJP1_ARTAN (NAD(P)-binding Rossmann-fold superfamily protein n=3 Tax=Anthemideae TaxID=102810 RepID=A0A2U1NJP1_ARTAN)

HSP 1 Score: 56.2 bits (134), Expect = 4.150e-8
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 RPGGMERPTDEFEKTHNARVGSANTIFGGLVSRLQV 108
            RPGGMERPTD F++THN  + + +T+FGGLVS LQV
Sbjct:  246 RPGGMERPTDSFKETHNLTLATEDTLFGGLVSNLQV 281
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7822.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4L2_ECTSI1.290e-972.22MsrB domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A1Y1HNB2_KLENI1.810e-972.22NAD(P)-binding Rossmann-fold superfamily protein n... [more]
A0A6H5KIF4_9PHAE4.650e-971.43MsrB domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZI62_9STRA8.480e-972.22Mss4-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A8J9SPF1_9CHLO3.020e-866.67Probable protein TIC 62, chloroplastic at N-termin... [more]
A0A6J1I5Q4_CUCMA3.030e-869.44protein TIC 62, chloroplastic n=4 Tax=Cucurbita Ta... [more]
M1AEX8_SOLTU3.040e-866.67Tic62 protein n=5 Tax=Solanum TaxID=4107 RepID=M1A... [more]
A0A068TP04_COFCA3.040e-869.44NAD(P)-bd_dom domain-containing protein n=4 Tax=Co... [more]
A0A4D9C5P5_SALSN4.150e-866.67NAD(P)-bd_dom domain-containing protein n=7 Tax=Sa... [more]
A0A2U1NJP1_ARTAN4.150e-866.67NAD(P)-binding Rossmann-fold superfamily protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7822contigC-tenellus_contig7822:153..269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4L2
PFAMsNAD_binding_10,SelR
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K07305
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000229,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0006807,GO:0006950,GO:0006979,GO:0007623,GO:0008150,GO:0008152,GO:0009295,GO:0009507,GO:0009508,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009636,GO:0009941,GO:0009987,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0030091,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0033554,GO:0033743,GO:0034357,GO:0034599,GO:0042221,GO:0042644,GO:0042646,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048511,GO:0050896,GO:0051716,GO:0055035,GO:0055114,GO:0070887,GO:0071704,GO:0097237,GO:0098552,GO:0098572,GO:0098754,GO:1901564,GO:1990748
Exons1
Evalue9.47e-08
EggNOG OGsCOG0229@1|root,COG0702@1|root,KOG0856@2759|Eukaryota,KOG1203@2759|Eukaryota
EC1.8.4.12
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size105
COG categoryGM
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.8712132-CDS-C-tenellus_contig7822:152..2571680790062.8712132-CDS-C-tenellus_contig7822:152..257Choristocarpus tenellus KU2346CDSC-tenellus_contig7822 153..257 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.8869648-UTR-C-tenellus_contig7822:257..2691680790062.8869648-UTR-C-tenellus_contig7822:257..269Choristocarpus tenellus KU2346UTRC-tenellus_contig7822 258..269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7822.1.1prot_C-tenellus_contig7822.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7822 153..257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7822.1.1

>prot_C-tenellus_contig7822.1.1 ID=prot_C-tenellus_contig7822.1.1|Name=mRNA_C-tenellus_contig7822.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=35bp
MERPTDEFEKTHNARVGSANTIFGGLVSRLQVCV*
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mRNA from alignment at C-tenellus_contig7822:153..269-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7822.1.1 ID=mRNA_C-tenellus_contig7822.1.1|Name=mRNA_C-tenellus_contig7822.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=117bp|location=Sequence derived from alignment at C-tenellus_contig7822:153..269- (Choristocarpus tenellus KU2346)
AGGCCTGGGGGAATGGAGCGCCCGACAGATGAGTTTGAGAAGACACATAA
TGCACGTGTGGGATCGGCAAACACAATCTTCGGTGGACTTGTGTCAAGGC
TGCAGGTTTGTGTTTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7822:153..269-

>mRNA_C-tenellus_contig7822.1.1 ID=mRNA_C-tenellus_contig7822.1.1|Name=mRNA_C-tenellus_contig7822.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=105bp|location=Sequence derived from alignment at C-tenellus_contig7822:153..269- (Choristocarpus tenellus KU2346)
ATGGAGCGCCCGACAGATGAGTTTGAGAAGACACATAATGCACGTGTGGG
ATCGGCAAACACAATCTTCGGTGGACTTGTGTCAAGGCTGCAGGTTTGTG
TTTAG
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