mRNA_C-tenellus_contig7808.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7808.1.1
Unique NamemRNA_C-tenellus_contig7808.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7808.1.1 vs. uniprot
Match: D7FLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL9_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.860e-34
Identity = 77/153 (50.33%), Postives = 98/153 (64.05%), Query Frame = 3 
Query:   39 PTKEACEAWERSLRPGQFYSEKGGRRPMMHRTQAVKGYPESRSWPRGVDGGAWGPQHLSPIPSRGDFQPLIPSPTTSPGRQCRRLPHSKKFPQEXXXXXXXXXXXXXXXXLASAATVGSGADIAAELSLLGLDCPELLNPF--VALELDEVRP 491
            PTKE+  AWERSLRPGQ++SE+GG RPM H+TQAV+G+P +R+WPRG DGGAWGPQHLSPIPS   + PL+PSPTTSPGR+ R       FP E                +A A  V     +AAE+   GL+  E L PF  + L+ +++ P
Sbjct:   32 PTKESVAAWERSLRPGQYFSERGGHRPMRHKTQAVQGHPGARAWPRGPDGGAWGPQHLSPIPSEKGYMPLVPSPTTSPGRRSRTGGRDATFPGEGCPTD-----------VAEAFAVAEA--VAAEVGFEGLE-REALRPFEPIVLQNEQLPP 170
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BLAST of mRNA_C-tenellus_contig7808.1.1 vs. uniprot
Match: A0A6H5J7Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.500e-26
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 3 
Query:   39 PTKEACEAWERSLRPGQFYSEKGGRRPMMHRTQAVKGYPESRSWPRGVDGGAWGPQHLSPIPSRGDFQPLIPSPTTSP 272
            PTKE+  AWERSLRPGQ++SEKGG RPM HRTQAV+G+P++R+WPRG DGGAWGPQHLSPIPS   + PL   P   P
Sbjct:   32 PTKESVAAWERSLRPGQYFSEKGGHRPMRHRTQAVQGHPDARAWPRGPDGGAWGPQHLSPIPSEKGYMPLEKLPPAPP 109
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7808.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLL9_ECTSI3.860e-3450.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7Z0_9PHAE2.500e-2669.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7808contigC-tenellus_contig7808:3335..5429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size839
Hectar predicted targeting categoryother localisation
Exons3
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790061.604822-UTR-C-tenellus_contig7808:3334..33941680790061.604822-UTR-C-tenellus_contig7808:3334..3394Choristocarpus tenellus KU2346UTRC-tenellus_contig7808 3335..3394 +
1680790061.6153705-UTR-C-tenellus_contig7808:4110..41691680790061.6153705-UTR-C-tenellus_contig7808:4110..4169Choristocarpus tenellus KU2346UTRC-tenellus_contig7808 4111..4169 +
1680790061.6481886-UTR-C-tenellus_contig7808:5201..54291680790061.6481886-UTR-C-tenellus_contig7808:5201..5429Choristocarpus tenellus KU2346UTRC-tenellus_contig7808 5202..5429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790061.6301136-CDS-C-tenellus_contig7808:4169..42981680790061.6301136-CDS-C-tenellus_contig7808:4169..4298Choristocarpus tenellus KU2346CDSC-tenellus_contig7808 4170..4298 +
1680790061.6390982-CDS-C-tenellus_contig7808:4838..52011680790061.6390982-CDS-C-tenellus_contig7808:4838..5201Choristocarpus tenellus KU2346CDSC-tenellus_contig7808 4839..5201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7808.1.1prot_C-tenellus_contig7808.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7808 4170..5201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7808.1.1

>prot_C-tenellus_contig7808.1.1 ID=prot_C-tenellus_contig7808.1.1|Name=mRNA_C-tenellus_contig7808.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=164bp
MMHRTQAVKGYPESRSWPRGVDGGAWGPQHLSPIPSRGDFQPLIPSPTTS
PGRQCRRLPHSKKFPQEEEEEEEEEAFPPSTVVLASAATVGSGADIAAEL
SLLGLDCPELLNPFVALELDEVRPFAWPYFVCACILLRCEGSGGYEYQQS
WGVDAMYYGVLWA*
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mRNA from alignment at C-tenellus_contig7808:3335..5429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7808.1.1 ID=mRNA_C-tenellus_contig7808.1.1|Name=mRNA_C-tenellus_contig7808.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2095bp|location=Sequence derived from alignment at C-tenellus_contig7808:3335..5429+ (Choristocarpus tenellus KU2346)
CTCCCAGGCCTTCTCGACGACCCGCCAACTCCCACACCCCTACAAAGGAG
GCATGTGAAGGTTGGTAAATCAGATGGCAAAAGTGTCCTTGTCCAGTAGA
CGTTTATGTCAGCTGTGTTGTCAATCTTCTTGTTTGGCTACAGAATAGAC
ATAATATAAGTTGGCTTCCTACTCTGCACGACCTTGGAGCAAATGCACGA
AAACGTACAGCTGCAAGTATTGAGAGGACACAATCTATATGCAAGAGGAG
CAGAGGTTGATTTAGGAAAGCGTGGCGAATTATTGCGAATCTGAGATCAC
CCTCACACCCAAATATGCCAAGGGATATGCATGTGGTTTTGTTGGAGATC
ATGTGGTAATTTGATGAGGTGCTATGTTGGCGACAGAGATGGTATCATCC
TCTGTGAGGGTAGTGGTGAGATAAGATGGGACTTCGGGGAAAAAAATTTT
AGGACATGTTTTTTTCCGTCTGAGATAGCGAGAAAAGGTAGGGGTACTGT
CTATACTCCCGGAGAACAACATTATTTCATCCTTGTGGCAATGGTGTCTA
TGTCAGACCGAGATTTGACTTGCCCGTCTTTTCAAACGGTGCTCAATCTA
TTTTCTATCCCTATCCGTCTTACCCTTAATCCCCCCCAATACGATACCCC
CTCTTCTCCACCGCCTCCCCCACTTAGTGTGTTAAAACTCTCTCACCACT
TGGCAAGGGTGTCCTGATCTCCGCTTCCAATTTTTCCCCCCTATCTCACA
TTATGGTTTCGTCCTCCACTACCCAGCATGGGAGCGGTCCTTAAGGCCAG
GACAATTCTATTCCGAGAAGGGTGGCCGCCGCCCTATGATGCACCGTACC
CAAGCTGTCAAGGGCTACCCTGAGTCTCGCTCCTGGCCGAGAGGAGTGGA
TGGAGGCGCATGGGGACCGCAGCATCTCTCACCCATACCTTCAAGGGGGG
ACTTTCAACCTCTTGTGAGTAAATTTTTTTCAGGGGTGTAGGATTGGGTA
GGGTGGGAATGAGAAGTGGTTCCGAACAAGAGTGGTCACAAGCAGGCAAG
CTTGGGTATATGCAACAGGAAATATTTGTGTTGACGAGCGGGATAACACG
GGTGACCTCGACAATTTGTCACACAATACCACATTTGGAAGACACCTTAT
GATGATTTTTGATAATACCATTTTATATGCTCTAGAGGCGACACAGATTG
TTCGGTGGAATGATTGACACTGCTGGGGTGCTGTTGTCATACAGTCGCTG
ATGAACATGCTCCCTCCCATCGTCTCTCTCTCTCTCTCTCTCTCACTAAC
CCTCTCTTTGCGTGTGTTGTGCACACACACATGCACACACCCTGATGACA
TCGTTGATTTTCTCAGCCAACACACCTCCGCCCTACTCACATCAGTCCCT
AACCCTAATATCATGATCCTTCCCCTTGCCCTAACCCTAACCCCATCTTC
CCTGCACGCTTCCATTTTTTTCAAACTTGCAATCCTACCTGCGCTTGGTC
ACAGATCCCATCCCCCACCACGTCTCCAGGCCGACAATGTCGACGCCTCC
CACACTCCAAGAAATTCCCCCAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GCCTTTCCGCCTTCGACTGTGGTGCTGGCCTCCGCTGCAACTGTGGGCTC
CGGAGCTGATATCGCTGCAGAGCTGAGCCTGTTAGGCCTGGATTGCCCTG
AGCTGTTGAATCCATTTGTGGCACTGGAGCTGGATGAGGTCAGGCCCTTT
GCATGGCCATACTTTGTGTGTGCATGCATACTACTACGCTGTGAGGGCTC
GGGGGGATACGAGTACCAACAGAGCTGGGGAGTTGATGCCATGTATTATG
GCGTATTATGGGCTTGAGCATTGTGTAGTTCGTTTTGAAACTGGCTCTAG
CAAACCACCTGTAGTGCATCTGATTTTTCTGCCCTTGAATGATCCCCTCT
ACGAGCTTTGTCCACCGCAGTACATGGAGCGTAAATTGATCGCAGGCGTT
TACAAATAAATAAATAAATGAATAAAAGCGTTAAGGGCAAAATACTTTTT
TTTTTGTGGTGGGGGGGGGGGACAGGAGTTGGTGTAATGGTGAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7808:3335..5429+

>mRNA_C-tenellus_contig7808.1.1 ID=mRNA_C-tenellus_contig7808.1.1|Name=mRNA_C-tenellus_contig7808.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=492bp|location=Sequence derived from alignment at C-tenellus_contig7808:3335..5429+ (Choristocarpus tenellus KU2346)
ATGATGCACCGTACCCAAGCTGTCAAGGGCTACCCTGAGTCTCGCTCCTG
GCCGAGAGGAGTGGATGGAGGCGCATGGGGACCGCAGCATCTCTCACCCA
TACCTTCAAGGGGGGACTTTCAACCTCTTATCCCATCCCCCACCACGTCT
CCAGGCCGACAATGTCGACGCCTCCCACACTCCAAGAAATTCCCCCAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGCCTTTCCGCCTTCGACTGTGGTGC
TGGCCTCCGCTGCAACTGTGGGCTCCGGAGCTGATATCGCTGCAGAGCTG
AGCCTGTTAGGCCTGGATTGCCCTGAGCTGTTGAATCCATTTGTGGCACT
GGAGCTGGATGAGGTCAGGCCCTTTGCATGGCCATACTTTGTGTGTGCAT
GCATACTACTACGCTGTGAGGGCTCGGGGGGATACGAGTACCAACAGAGC
TGGGGAGTTGATGCCATGTATTATGGCGTATTATGGGCTTGA
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