mRNA_C-tenellus_contig7801.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7801.1.1 vs. uniprot
Match: A0A6H5KLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV8_9PHAE) HSP 1 Score: 340 bits (871), Expect = 1.900e-97 Identity = 263/765 (34.38%), Postives = 364/765 (47.58%), Query Frame = 1 Query: 1 GGVVLAQAELNSEFLRGTIGHKRSVLLTTEPPTVPENTSEQDTDLLAVQKNRAPSVTLSNFLDGASLDLAGHCIPAHHIQPHLELQILECQNLKKADLLGKSDPCVIVMWDGEEVGRTDVVRADLNPVFDKRGKKELEGRDEQKGGGSSRFKDGACFSLPLSPP--------------KSVDGSVVWETYAPELRLEVWDMDRD-IRRRWKKSDFLGSVVLQGPGDISPVIEATARVRQGVGRAEGGKFMHQPASVVLRL----GCNCLDGVKSGESSHPT-GLIKINLTLKGATDATERWESGAGSVPTKA-VQIGSMDKTKESALTSSLLQPKKPKEAWLHQSGHVTVPAPALSLKEPTEALASLPYLRVCCLDARGLPSDCNAYCRIFWNGVEVGRTATALSILKSGTHQVRG-----PTWVFQRNPIW---NDKIFGS---GC----------GELVVPLQSRVALDDGSNANELVVELFDGL-----------------SSSDKEV--KEAQPLVADQQKWG-------GRDRVGESLGVARICGQDLL-----MTDVPQVM--------------EVQLFKISCGNDLHNTQY-HHRRMLRLCLTRQCEPTVLGSTKKVGEVSLVNDSGFNRSAIGLGLTNSRGCRYLNDQPKEWLKLFLKGCQLQRGLDLTGTSDPYCVVFFNRSWWGQTKVCWVTLNPTWEEWFDLELPLGRANPEYTGSNPGMKAEVRVEVWDNNAVGSDSFIGEAILLLAGSDEG 2031 G V+A+A L++ FLR TIG +RSV +TT P+V E + + + S T S F A LD+AGH + A +P L LQ+LECQNL+ AD+LGKSDPCV+V W+G EVGRT + R DL+PVF S+ + F LPL PP SV S W Y PELRLEVWDMDRD RR+WKK LGSV L+GP I+P+IEA+ V Q G ++ V +RL G G GE+ + G++ I +++ TD +E W S A T + V TK A+ ++ L+ ++ + A S T K L + CLDARGLP+ C+ YCR+FWNG +VG T +A S GT G V+QRNP+W +DKI GC VVPL + A+ELV+E+FDG +S + V K+A L AD+ G RD G SLG+ I G+ L D+P ++ + L +I G L + H R + PT + S+ + + G A+ +T+ R P WL+L L+G QL+RGLD++GTSDP+C V+ +R W+ +T+VCW TL P W++ ++E+ GR G + E+RVEVWD + VG++ FIGE L L +G Sbjct: 3430 GARVVARATLDAGFLRRTIGCQRSVGMTTVAPSVGETGDAKHS-----KGEDGQSPTSSPF---ARLDIAGHVVSARPGRPRLRLQVLECQNLRGADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVF------------------SAAM---STFQLPLLPPPTSNLQSGDGRSGRSSVQRSANWRAYTPELRLEVWDMDRDTFRRKWKKGQLLGSVDLRGPYGIAPLIEASTAV-QAPGVGTTANVDNKIPGVFIRLRAPDGQGSKHGAAGGEAGQVSAGVMSIRTSIEDHTDDSEAWISQAPKASTGSIVTFREASTTKVGAVATNALELERSRPAQSSLSSRGTTLTAEAGRKTS---------LGIHCLDARGLPAGCDGYCRVFWNGRQVGSTLSA-SCFAHGTRHTAGLGHAAAASVYQRNPVWWTSSDKILSDDDRGCRKPSLDKCSGANAVVPLNENPTV-----ADELVLEVFDGSVRKEGKKSTAGMLAKCRASLGESVAGKDAADLKADEIGVGLNSATIASRDVFGRSLGIVTIHGEHLTNPPHGRIDLPLLLPPSCKGVNASRITLSISLKQIVDGERLADVAVPRHMRAAEQRKSNDNVPTTMRSSATTNTMLVAKREGGEWEALKEQMTSQR--------PTRWLRLLLQGAQLRRGLDVSGTSDPFCTVYVDRVWFAETRVCWGTLAPRWDQQIEIEV-FGRGGAPAQGLGL-VGHEIRVEVWDKDVVGANDFIGEVHLFLRERHDG 4139
BLAST of mRNA_C-tenellus_contig7801.1.1 vs. uniprot
Match: D8LPY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI) HSP 1 Score: 298 bits (762), Expect = 4.560e-83 Identity = 226/691 (32.71%), Postives = 326/691 (47.18%), Query Frame = 1 Query: 238 QPHLELQILECQNLKKADLLGKSDPCVIVMWDGEEVGRTDVVRADLNPVFDKRGKKELEGRDEQKGGGSSRFKDGACFSLPLSPP---------------KSVDGSVVWETYAPELRLEVWDMDRD-IRRRWKKSDFLGSVVLQGPGDISPVIEATARVRQGVGRAEGGKFMHQPASVVLRL----GCNCLDGVKSGESSHP-TGLIKINLTLKGATDATERWESGAGSVPTKA---VQIGSMDKTKESALTSSLLQPKKPKEAWLHQSGHVTVPAPALSLKEPTEALASLPYLRVCCLDARGLPSDCNAYCRIFWNGVEVGRTATALSILKSGTHQV----RGPTWVFQRNPIW---NDKIFGS-------------GCGELVVPLQSRVALDDGSNANELVVELFDGLSSSDKEVKEAQP-LVADQQKWGG--------------------------RDRVGESLGVARICGQDLLMT-----DVPQVM--------------EVQLFKISCGNDLHNTQYHHRRMLRLCLTRQCE---PTVLGSTKKVGEVSLVNDSGFNRSAIGLGLTNSRGCRYLNDQPKEWLKLFLKGCQLQRGLDLTGTSDPYCVVFFNRSWWGQTKVCWVTLNPTWEEWFDLELPLGRANPEYTGSNPGMKAEVRVEVWDNNAVGSDSFIGEAILLLAGSDEG 2031 +P L LQ+ ECQNL+ AD+LGKSDPCV+V W+G EVGRT + R DL+PVF G + F LPL PP S+ SV W YAPELRLEVWDMDRD RR+WKK LGSV L+GP I+P+IEA+A GVG ++ V LRL G G GE+ G+I I ++++ TD +E W S A + T + ++ K A +S L+ +P ++ L SG T L+++ +A L + CLDARGLP+ C+ YCR+FWNG +VG T +A + H P V+QRNP+W +D++ VVP + A+EL++E+FDG S+ KE K++ ++ + WG RD G SLG+ I G+ L D+P ++ + L +I G + R++R R+ PT S+ + + G ++ T+ R P WL+L L+G +L+RGLD++GTSDP+C V+ +R W+ +T+VCW TL P W++ ++E+ GR G + E+RVEVWD + VG++ FIGE L L +G Sbjct: 3310 RPRLRLQVQECQNLRSADMLGKSDPCVLVFWNGVEVGRTPIARDDLHPVFSAAG---------------------STFRLPLLPPPISNTLHSGDGRSGRSSLQRSVDWRAYAPELRLEVWDMDRDTFRRKWKKGKLLGSVDLRGPYGIAPLIEASAVQDPGVGTT--AHVDNKIPGVFLRLRAPDGQGSKHGADGGEAGQAFAGVISIRISIENDTDDSEAWISQAPAASTSSPATIREARSTKVGAVATNTSELKCSRPAQSSL-SSGDTT-----LTVEAGRKA-----SLGIRCLDARGLPAGCDGYCRVFWNGRQVGSTLSASRFAQETRHTTGLGHAAPASVYQRNPVWWASSDEMLSDDDRGYRKPSLDECSSATAVVPQNESPTV-----ADELMLEVFDG--STRKEGKKSTGGMLPCRASWGESVAGKDAADLKAGGIGVGVNNATTGCRDVFGRSLGIVTIHGEHLTSPPHGRIDLPLLLPPSCKGMNESGITLSISLKQIVDGVSFADVAVP--RLMRAAEQRKSNDNVPTTTRSSITTNTMLVAKGEGGEPESLKEQTTSQR--------PTRWLRLLLQGARLRRGLDVSGTSDPFCTVYVDRVWFAETRVCWGTLAPRWDQRIEIEV-FGREGALAQGLGL-VGHEIRVEVWDKDVVGANDFIGEVHLFLRECQDG 3947
BLAST of mRNA_C-tenellus_contig7801.1.1 vs. uniprot
Match: A0A7S2SJY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJY7_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 4.630e-8 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 1762 DLTGTSDPYCVVFFNRSWWGQTKVCWVTLNPTWEEWFDLELPLGRANPEYTGSNPGMKAEVRVEVWDNNAVGSDSFIGEAIL 2007 D+TGTSDPYCVV +N G+T V TLNP W + L LP+ + + +E+R+EV+D++ VG D F+G+ +L Sbjct: 4 DITGTSDPYCVVHWNGQEVGRTSVIQRTLNPNWSDATFL-LPVDQEL---------LDSELRIEVFDHDLVGDDDFLGQVVL 75
BLAST of mRNA_C-tenellus_contig7801.1.1 vs. uniprot
Match: A0A7S0XQR3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQR3_HEMAN) HSP 1 Score: 59.7 bits (143), Expect = 1.070e-5 Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1 Query: 1753 RGLDLTGTSDPYCVVFFNRSWWGQ------TKVCWVTLNPTWEEWFDLELPLGRANPEYTGSNPGMKAEVRVEVWDNNAVGSDSFIGEAILLLA 2016 R DLTG SDP+ F R+ G+ T V W T+NP WEE F+L + + +R+EVWD + +GSD F+GE ++ +A Sbjct: 21 RAADLTGKSDPFVRAFVERA--GELLVTMETSVRWETVNPLWEEEFEL-----------SDDDLEQGTTMRLEVWDKDKIGSDDFLGEIVVDMA 101
BLAST of mRNA_C-tenellus_contig7801.1.1 vs. uniprot
Match: A0A7S1HL30_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HL30_HEMAN) HSP 1 Score: 60.1 bits (144), Expect = 1.140e-5 Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 1 Query: 1708 PKEWLKLFLKGCQLQRGLDLTGTSDPYCVVFFNRSWWGQ------TKVCWVTLNPTWEEWFDLELPLGRANPEYTGSNPGMKAEVRVEVWDNNAVGSDSFIGEAILLLA 2016 P+E + + ++ R DLTG SDP+ F R+ G+ T V W T+NP WEE F+L + + +R+EVWD + +GSD F+GE ++ +A Sbjct: 183 PEERMFVRVQRADGLRAADLTGKSDPFVRAFVERA--GELLVTMETSVRWETVNPLWEEEFEL-----------SDDDLEQGTTMRLEVWDKDKIGSDDFLGEIVVDMA 278
BLAST of mRNA_C-tenellus_contig7801.1.1 vs. uniprot
Match: A0A2E0V4Q6_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A2E0V4Q6_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 3.200e-5 Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 Query: 1765 LTGTSDPYCVVFFNRSWWGQTKVCWVTLNPTWEEWFDLELPLGRANPEYTGSNPGMKAEVRVEVWDNNAVGSDSFIGEAIL 2007 L G +DPYCVV + +TKVC TL+P W F+ +P G A++ +EV+D++ VGSD F+G AI+ Sbjct: 65 LGGRADPYCVVKYQGKKIAKTKVCHSTLDPCWNAVFEFTVPTH-------APTEGEAADLLIEVFDHDLVGSDDFLGCAII 138 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7801.1.1 >prot_C-tenellus_contig7801.1.1 ID=prot_C-tenellus_contig7801.1.1|Name=mRNA_C-tenellus_contig7801.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=678bp GGVVLAQAELNSEFLRGTIGHKRSVLLTTEPPTVPENTSEQDTDLLAVQKback to top mRNA from alignment at C-tenellus_contig7801:3255..5288+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7801.1.1 ID=mRNA_C-tenellus_contig7801.1.1|Name=mRNA_C-tenellus_contig7801.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2034bp|location=Sequence derived from alignment at C-tenellus_contig7801:3255..5288+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7801:3255..5288+ >mRNA_C-tenellus_contig7801.1.1 ID=mRNA_C-tenellus_contig7801.1.1|Name=mRNA_C-tenellus_contig7801.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=2034bp|location=Sequence derived from alignment at C-tenellus_contig7801:3255..5288+ (Choristocarpus tenellus KU2346)back to top |