mRNA_C-tenellus_contig7800.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7800.3.1
Unique NamemRNA_C-tenellus_contig7800.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7800.3.1 vs. uniprot
Match: D7FWS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS2_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.200e-11
Identity = 42/143 (29.37%), Postives = 72/143 (50.35%), Query Frame = 2 
Query:  518 HHNTSGWQARHYKQSIARLRAGQAVLVVDFQSQYSHGHQDLTQQEFFNVFLTAMFPAAVWMRDFKRGGLGGGRTWAHSLVFLSQDTSQDNEFMQHVLEKLINEFLKPMAQEYGQE-LRVLHIWTDRCGSQFKNRWQMEWVSKA 943
            H      Q   + +++A L  GQ V VVDFQ Q     QD  Q + +      +FPA ++ +         GR W +S   L+ D +QDN ++Q+V+ +L++  +  + ++ G   +    I+TD C  QFK R+   WV+++
Sbjct:  540 HRRQFHHQRSTFNETLATLEEGQVVFVVDFQEQLQLSEQDEVQSQHWQHESVTIFPAPIYFKM-------RGRVWCYSFQVLTDDRTQDNVWVQYVMNQLLSVHVPGLLRKVGAAPMTKAIIFTDNCAKQFKCRFHFGWVAQS 675
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BLAST of mRNA_C-tenellus_contig7800.3.1 vs. uniprot
Match: UPI000C04FA25 (uncharacterized protein LOC111325164 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C04FA25)

HSP 1 Score: 68.2 bits (165), Expect = 5.960e-9
Identity = 44/168 (26.19%), Postives = 82/168 (48.81%), Query Frame = 2 
Query:  428 KKRKVLLPRTETFPTLVGVILKNFDKNFFLHHNTSGWQARHYKQSIARLRAGQAVLVVDFQSQYSHGHQDLTQQEFFNV-----FLTAMFPAAVWMRDFKRGGLGGGRTWAHSLVFLSQDTSQDNEFMQHVLEKLINEFLKPMAQEYGQELRVLHIWTDRCGSQFKNR 916
            +K+K+ L   ET P+ +    KN  K++ +H   + WQ       +  L    AV + D+   Y+   QD TQ E+F+V      +T ++  A  + D               +  +S D  QDN  + H +++L+N ++     + GQ+++++H +TD C +Q+K+R
Sbjct:  464 EKKKLALVTKETPPSEMFGYFKNLMKDYPMHSFMAKWQRDQLDTLLEHLPIDHAVAIHDYSEGYTCRSQDETQSEYFDVAKVSLHVTILYRHATEVNDGIESTEENPEIVKEHVFVISDDVIQDNSSV-HKVQELLNNYI---TNDLGQQVKIMHEFTDGCAAQYKSR 627
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BLAST of mRNA_C-tenellus_contig7800.3.1 vs. uniprot
Match: A0A2B4SNR0_STYPI (Xanthine dehydrogenase/oxidase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SNR0_STYPI)

HSP 1 Score: 68.2 bits (165), Expect = 6.850e-9
Identity = 44/168 (26.19%), Postives = 82/168 (48.81%), Query Frame = 2 
Query:  428 KKRKVLLPRTETFPTLVGVILKNFDKNFFLHHNTSGWQARHYKQSIARLRAGQAVLVVDFQSQYSHGHQDLTQQEFFNV-----FLTAMFPAAVWMRDFKRGGLGGGRTWAHSLVFLSQDTSQDNEFMQHVLEKLINEFLKPMAQEYGQELRVLHIWTDRCGSQFKNR 916
            +K+K+ L   ET P+ +    KN  K++ +H   + WQ       +  L    AV + D+   Y+   QD TQ E+F+V      +T ++  A  + D               +  +S D  QDN  + H +++L+N ++     + GQ+++++H +TD C +Q+K+R
Sbjct: 1524 EKKKLALVTKETPPSEMFGYFKNLMKDYPMHSFMAKWQRDQLDTLLEHLPIDHAVAIHDYSEGYTCRSQDETQSEYFDVAKVSLHVTILYRHATEVNDGIESTEENPEIVKEHVFVISDDVIQDNSSV-HKVQELLNNYI---TNDLGQQVKIMHEFTDGCAAQYKSR 1687
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BLAST of mRNA_C-tenellus_contig7800.3.1 vs. uniprot
Match: A0A2B4SH58_STYPI (Furin-1 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SH58_STYPI)

HSP 1 Score: 68.2 bits (165), Expect = 7.090e-9
Identity = 44/168 (26.19%), Postives = 82/168 (48.81%), Query Frame = 2 
Query:  428 KKRKVLLPRTETFPTLVGVILKNFDKNFFLHHNTSGWQARHYKQSIARLRAGQAVLVVDFQSQYSHGHQDLTQQEFFNV-----FLTAMFPAAVWMRDFKRGGLGGGRTWAHSLVFLSQDTSQDNEFMQHVLEKLINEFLKPMAQEYGQELRVLHIWTDRCGSQFKNR 916
            +K+K+ L   ET P+ +    KN  K++ +H   + WQ       +  L    AV + D+   Y+   QD TQ E+F+V      +T ++  A  + D               +  +S D  QDN  + H +++L+N ++     + GQ+++++H +TD C +Q+K+R
Sbjct:  464 EKKKLALVTKETPPSEMFGYFKNLMKDYPMHSFMAKWQRDQLDTLLEHLPIDHAVAIHDYSEGYTCRSQDETQSEYFDVAKVSLHVTILYRHATEVNDGIESTEENPEIVKEHVFVISDDVIQDNSSV-HKVQELLNNYI---TNDLGQQVKIMHEFTDGCAAQYKSR 627
[Close]
BLAST of mRNA_C-tenellus_contig7800.3.1 vs. uniprot
Match: UPI001CF5AED4 (uncharacterized protein LOC114951811 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF5AED4)

HSP 1 Score: 56.6 bits (135), Expect = 2.240e-5
Identity = 43/168 (25.60%), Postives = 79/168 (47.02%), Query Frame = 2 
Query:  428 KKRKVLLPRTETFPTLVGVILKNFDKNFFLHHNTSGWQARHYKQSIARLRAGQAVLVVDFQSQYSHGHQDLTQQEFFNV-----FLTAMFPAAVWMRDFKRGGLGGGRTWAHSLVFLSQDTSQDNEFMQHVLEKLINEFLKPMAQEYGQELRVLHIWTDRCGSQFKNR 916
            +++K+ L   ET P+ +    K+  K++ LH   + WQ       +  L     V + D+   Y+   QD TQ E+F+V      +T ++  +    D               +  +S D  QDN  + H +++L+N ++    ++ GQ++ VLH +TD C  Q+K+R
Sbjct:  155 EEKKLALVTKETPPSQMIGYFKDL-KDYPLHSFMAKWQREQLDTLLEYLPLDHVVAIHDYSEGYTCRSQDETQSEYFDVAKVSLHVTILYRHSTEKNDGIESTEENPEVVKEHVFVISDDVIQDNNSV-HEVQELLNTYI---TKDLGQQITVLHEFTDGCLVQYKSR 317
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7800.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FWS2_ECTSI2.200e-1129.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
UPI000C04FA255.960e-926.19uncharacterized protein LOC111325164 n=3 Tax=Stylo... [more]
A0A2B4SNR0_STYPI6.850e-926.19Xanthine dehydrogenase/oxidase n=1 Tax=Stylophora ... [more]
A0A2B4SH58_STYPI7.090e-926.19Furin-1 n=1 Tax=Stylophora pistillata TaxID=50429 ... [more]
UPI001CF5AED42.240e-525.60uncharacterized protein LOC114951811 n=1 Tax=Acrop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7800contigC-tenellus_contig7800:3869..5114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size955
Hectar predicted targeting categoryother localisation
Exons3
Cds size765
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790061.3668356-UTR-C-tenellus_contig7800:3868..40581680790061.3668356-UTR-C-tenellus_contig7800:3868..4058Choristocarpus tenellus KU2346UTRC-tenellus_contig7800 3869..4058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790061.378624-CDS-C-tenellus_contig7800:4058..40791680790061.378624-CDS-C-tenellus_contig7800:4058..4079Choristocarpus tenellus KU2346CDSC-tenellus_contig7800 4059..4079 +
1680790061.3907144-CDS-C-tenellus_contig7800:4257..44851680790061.3907144-CDS-C-tenellus_contig7800:4257..4485Choristocarpus tenellus KU2346CDSC-tenellus_contig7800 4258..4485 +
1680790061.4027903-CDS-C-tenellus_contig7800:4598..51141680790061.4027903-CDS-C-tenellus_contig7800:4598..5114Choristocarpus tenellus KU2346CDSC-tenellus_contig7800 4599..5114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7800.3.1prot_C-tenellus_contig7800.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7800 4059..5114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7800.3.1

>prot_C-tenellus_contig7800.3.1 ID=prot_C-tenellus_contig7800.3.1|Name=mRNA_C-tenellus_contig7800.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=255bp
MSHNNIKALSNRLTLHAPRGATKQEMIDRIKEKYAEYRAKDLMSDDFIAA
SRMPGDTFPHSEDLDEDDNIPTTRTNKHKKKRKVLLPRTETFPTLVGVIL
KNFDKNFFLHHNTSGWQARHYKQSIARLRAGQAVLVVDFQSQYSHGHQDL
TQQEFFNVFLTAMFPAAVWMRDFKRGGLGGGRTWAHSLVFLSQDTSQDNE
FMQHVLEKLINEFLKPMAQEYGQELRVLHIWTDRCGSQFKNRWQMEWVSK
AFGRH
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mRNA from alignment at C-tenellus_contig7800:3869..5114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7800.3.1 ID=mRNA_C-tenellus_contig7800.3.1|Name=mRNA_C-tenellus_contig7800.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1246bp|location=Sequence derived from alignment at C-tenellus_contig7800:3869..5114+ (Choristocarpus tenellus KU2346)
GGAACAGAGACTGTGGGTGAGGAGGGAGGATACGCGACCTCTTGCATTAA
TAGCACATGCGATACATGCAAATGGAAGGAGCACCCCCATCTGGAAATGT
CCCTGCATGGTCGAATGTCACTCCATTATTGTAACCTAGAACGAGTTCAT
CACTGCATACACCCCTATTGTGGAGAGCGAACTTGAAGGAATGTCGCATA
ACAACATCAAGGTGAACACGGGCCCTGTATGGTTGTAAACAAGGTCGCAA
TCCTGCATGCACAGTTTCCAGGACTCGATTTACAAAAGCCCTTCTTTCTT
AGAGAAACAGGCCACACCCACACAGGTGCCCACTCCATGAACTCATCCCT
CCCTTCATTCTTTGCCCATGTTCTTCCTTTCCTCTGCAGGCTCTCTCGAA
TCGACTAACTCTACATGCACCCAGAGGGGCCACAAAGCAGGAGATGATTG
ATAGGATAAAGGAAAAGTATGCAGAGTACAGGGCAAAGGATCTTATGTCT
GACGATTTCATCGCAGCCAGCCGCATGCCAGGGGATACCTTTCCGCACAG
TGAAGATCTTGATGAGGATGACAACATCCCAACGACCAGAACCAACAAGC
ACAAGAAGAAGCGCAAGGTGATGACTCCATAATCCCCACAAGTATCCAAA
AGAAGATCATACCACACTCACTGCAAACAAGGCTCTGTATTGTTGCTGAT
CACTAATGTGTCATGGGTCCCTTCTTACAGGTTCTACTCCCGAGGACAGA
GACGTTTCCAACACTTGTTGGAGTCATCCTCAAAAACTTTGACAAGAACT
TCTTCCTACATCACAACACCAGCGGTTGGCAGGCCCGCCACTACAAGCAA
TCCATAGCCCGTCTACGTGCCGGGCAGGCTGTACTCGTGGTAGACTTCCA
ATCCCAATACAGTCACGGTCACCAGGACTTGACCCAACAGGAGTTCTTCA
ACGTTTTCCTGACTGCAATGTTCCCCGCTGCCGTGTGGATGAGGGACTTC
AAGAGAGGAGGCCTCGGGGGGGGACGGACGTGGGCGCACAGCCTTGTGTT
CTTAAGTCAAGACACCAGCCAGGACAATGAGTTTATGCAGCACGTTCTAG
AGAAGCTCATCAACGAGTTCTTGAAGCCCATGGCTCAGGAGTATGGACAG
GAGCTGCGGGTCCTCCACATCTGGACCGACAGATGTGGAAGCCAGTTCAA
GAACAGGTGGCAGATGGAGTGGGTCTCGAAGGCCTTTGGAAGGCAC
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Coding sequence (CDS) from alignment at C-tenellus_contig7800:3869..5114+

>mRNA_C-tenellus_contig7800.3.1 ID=mRNA_C-tenellus_contig7800.3.1|Name=mRNA_C-tenellus_contig7800.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=765bp|location=Sequence derived from alignment at C-tenellus_contig7800:3869..5114+ (Choristocarpus tenellus KU2346)
ATGTCGCATAACAACATCAAGGCTCTCTCGAATCGACTAACTCTACATGC
ACCCAGAGGGGCCACAAAGCAGGAGATGATTGATAGGATAAAGGAAAAGT
ATGCAGAGTACAGGGCAAAGGATCTTATGTCTGACGATTTCATCGCAGCC
AGCCGCATGCCAGGGGATACCTTTCCGCACAGTGAAGATCTTGATGAGGA
TGACAACATCCCAACGACCAGAACCAACAAGCACAAGAAGAAGCGCAAGG
TTCTACTCCCGAGGACAGAGACGTTTCCAACACTTGTTGGAGTCATCCTC
AAAAACTTTGACAAGAACTTCTTCCTACATCACAACACCAGCGGTTGGCA
GGCCCGCCACTACAAGCAATCCATAGCCCGTCTACGTGCCGGGCAGGCTG
TACTCGTGGTAGACTTCCAATCCCAATACAGTCACGGTCACCAGGACTTG
ACCCAACAGGAGTTCTTCAACGTTTTCCTGACTGCAATGTTCCCCGCTGC
CGTGTGGATGAGGGACTTCAAGAGAGGAGGCCTCGGGGGGGGACGGACGT
GGGCGCACAGCCTTGTGTTCTTAAGTCAAGACACCAGCCAGGACAATGAG
TTTATGCAGCACGTTCTAGAGAAGCTCATCAACGAGTTCTTGAAGCCCAT
GGCTCAGGAGTATGGACAGGAGCTGCGGGTCCTCCACATCTGGACCGACA
GATGTGGAAGCCAGTTCAAGAACAGGTGGCAGATGGAGTGGGTCTCGAAG
GCCTTTGGAAGGCAC
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