mRNA_C-tenellus_contig780.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig780.5.1
Unique NamemRNA_C-tenellus_contig780.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: D8LB87_ECTSI (Similar to Dynein light chain Tctex-type 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB87_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.310e-32
Identity = 52/94 (55.32%), Postives = 77/94 (81.91%), Query Frame = 2
Query:  185 SLAQLLEQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVFACSL 466
            +++++L+  LQ  KY AS  +EW++AICSQT+AAL++++ +FKYTATCV+ QKTGGG+HT SAAC+EP  DGC++ERW++ ++  I+ VF CSL
Sbjct:   19 AISKVLDVTLQDRKYDASSVEEWSDAICSQTLAALRSISGSFKYTATCVLTQKTGGGLHTSSAACYEPSTDGCVVERWENQSILAIVVVFGCSL 112          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: A0A835YG30_9STRA (Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YG30_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.270e-19
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  185 SLAQLLEQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVFACS 463
            ++ QLL++ L+G+ Y+    +EW   + S  V ALQ L+  FKY ATC I QK GGG+H+ SAA W+P RDGC    W+   M+  +  FA S
Sbjct:   22 AITQLLDETLKGQAYEPDAAKEWAAKLSSGAVTALQGLSQHFKYIATCTIAQKCGGGLHSESAASWDPARDGCCDVAWEGDGMSATVVAFATS 114          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: A0A7R8WBZ9_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WBZ9_9CRUS)

HSP 1 Score: 89.0 bits (219), Expect = 6.460e-19
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query:  203 EQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVF 454
            E  L    Y A + Q+WTN++  + +  L  L   FKY  TCVI QKTGGGVHT S   W+P  DG    RWD+ TM C+++V+
Sbjct:   26 ENTLGQNSYNAGKMQQWTNSVTEKVLQQLAKLQKPFKYVVTCVIIQKTGGGVHTASTCFWDPTTDGVCNVRWDNKTMLCLVSVY 109          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: A0A4E0QUZ9_FASHE (Cytoplasmic dynein light chain n=2 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0QUZ9_FASHE)

HSP 1 Score: 80.9 bits (198), Expect = 9.270e-16
Identity = 31/91 (34.07%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  194 QLLEQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVFACSL 466
            +++  ++    + A++ ++WT+ I  Q+++ L  LN  FKY  +CV+ Q+ G G+ TGSA  W+   DGC   +W++ +M C +TVF  S+
Sbjct:   30 EIIGNVVGASDFSANKIKQWTSTIIEQSISQLARLNRPFKYIVSCVMMQRNGAGLQTGSACYWDSSTDGCYTLKWENKSMYCFVTVFGISI 120          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: A0A7S2UUF8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.720e-12
Identity = 29/90 (32.22%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  200 LEQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSA-ACWEPERDGCILERWDSPTMTCIITVFACSL 466
            L  +L+G+++Q ++  EWT+ +  + +A L  L+  FKYT +C++F+K  G   T +  A W+P  DG    RW++ +M+C++ +   +L
Sbjct:   30 LTSVLEGKRFQTTKLAEWTDLVTQECLAGLARLSRNFKYTVSCLLFEKEQGAQMTSAVTAYWDPRTDGSFTLRWENDSMSCVLVISGYAL 119          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: A0A0R3VWQ9_TAEAS (Uncharacterized protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3VWQ9_TAEAS)

HSP 1 Score: 69.7 bits (169), Expect = 8.390e-12
Identity = 28/91 (30.77%), Postives = 49/91 (53.85%), Query Frame = 2
Query:  194 QLLEQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVFACSL 466
            +++   L    +++++   W + I  Q +  L  LN  FKY  TCVI QK G  ++TGS   W+   DG    +W++ +M C++T F  ++
Sbjct:    8 EIVTNTLTNNNFESTKINSWASEITEQCLHQLTKLNRPFKYLVTCVIMQKNGSSLYTGSTCYWDATTDGNCTVKWENESMHCVVTCFGLAI 98          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: M2Y6L9_GALSU (Dynein light chain Tctex-type 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6L9_GALSU)

HSP 1 Score: 70.5 bits (171), Expect = 1.490e-11
Identity = 30/91 (32.97%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  194 QLLEQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVFACSL 466
            +++E  +  EKY+ ++T EWTN +C + +A L  L   FKY  +C + QK G G HT +   W+ + D C   + ++  +  I T++A S+
Sbjct:   58 EIIESTVGEEKYEHTKTVEWTNQMCEKILAKLLELQKPFKYIVSCSLLQKKGAGFHTATTCYWDADCDQCCTIKHETKHLHVICTIYAVSI 148          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: W6U5D5_ECHGR (Dynein light chain Tctex-type n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=W6U5D5_ECHGR)

HSP 1 Score: 67.8 bits (164), Expect = 6.570e-11
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 2
Query:  212 LQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVFACSL 466
            L   K ++++   W + I  Q +  L  LN  FKY  TCVI QK G  ++TGS   W+   DG    +W++ +M CI+T F  ++
Sbjct:   30 LTNNKLESAKMNAWASEITEQCLHQLTKLNRPFKYLVTCVIMQKDGTSLYTGSTCYWDATTDGNCTIKWENGSMYCIVTCFGLAI 114          
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Match: A0A8E0RPC4_9TREM (Uncharacterized protein n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RPC4_9TREM)

HSP 1 Score: 53.9 bits (128), Expect = 1.670e-5
Identity = 23/90 (25.56%), Postives = 48/90 (53.33%), Query Frame = 2
Query:  194 QLLEQMLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGVHTGSAACWEPERDGCILERWDSPTMTCIITVFACS 463
            +++  ++   ++  ++ ++WT+ I  Q+++ L  LN  FKY  +CV+ Q+ G G+ TGSA  W+   D   +         C++ + + S
Sbjct:   16 EIIGNVVGASEFSPTKIKQWTSTIIEQSISQLARLNRPFKYIVSCVMMQRNGAGLQTGSACYWDSSTDALWM------LYECLVQIVSIS 99          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig780.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LB87_ECTSI1.310e-3255.32Similar to Dynein light chain Tctex-type 1 n=2 Tax... [more]
A0A835YG30_9STRA5.270e-1944.09Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A7R8WBZ9_9CRUS6.460e-1945.24Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A4E0QUZ9_FASHE9.270e-1634.07Cytoplasmic dynein light chain n=2 Tax=Fasciola he... [more]
A0A7S2UUF8_9STRA2.720e-1232.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0R3VWQ9_TAEAS8.390e-1230.77Uncharacterized protein n=1 Tax=Taenia asiatica Ta... [more]
M2Y6L9_GALSU1.490e-1132.97Dynein light chain Tctex-type 1 n=1 Tax=Galdieria ... [more]
W6U5D5_ECHGR6.570e-1135.29Dynein light chain Tctex-type n=1 Tax=Echinococcus... [more]
A0A8E0RPC4_9TREM1.670e-525.56Uncharacterized protein n=1 Tax=Fasciolopsis buski... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig780contigC-tenellus_contig780:7767..8859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB87
PFAMsTctex-1
Model size761
Max annot lvl2759|Eukaryota
KEGG koko:K05039,ko:K10420
KEGG TC2.A.22.3
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.76e-34
EggNOG OGsKOG4081@1|root,KOG4081@2759|Eukaryota
Ec32 ortholog descriptionsimilar to Dynein light chain Tctex-type 1
Ec32 orthologEc-27_004800.1
Descriptionintracellular transport of viral protein in host cell
Cds size261
COG categoryS
BRITEko00000,ko02000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790061.298504-UTR-C-tenellus_contig780:7766..79741680790061.298504-UTR-C-tenellus_contig780:7766..7974Choristocarpus tenellus KU2346UTRC-tenellus_contig780 7767..7974 +
1680790061.3334365-UTR-C-tenellus_contig780:8567..88591680790061.3334365-UTR-C-tenellus_contig780:8567..8859Choristocarpus tenellus KU2346UTRC-tenellus_contig780 8568..8859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790061.309217-CDS-C-tenellus_contig780:7974..80861680790061.309217-CDS-C-tenellus_contig780:7974..8086Choristocarpus tenellus KU2346CDSC-tenellus_contig780 7975..8086 +
1680790061.320887-CDS-C-tenellus_contig780:8418..85671680790061.320887-CDS-C-tenellus_contig780:8418..8567Choristocarpus tenellus KU2346CDSC-tenellus_contig780 8419..8567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig780.5.1prot_C-tenellus_contig780.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig780 7975..8567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig780.5.1

>prot_C-tenellus_contig780.5.1 ID=prot_C-tenellus_contig780.5.1|Name=mRNA_C-tenellus_contig780.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=87bp
MLQGEKYQASRTQEWTNAICSQTVAALQTLNDTFKYTATCVIFQKTGGGV
HTGSAACWEPERDGCILERWDSPTMTCIITVFACSL*
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mRNA from alignment at C-tenellus_contig780:7767..8859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig780.5.1 ID=mRNA_C-tenellus_contig780.5.1|Name=mRNA_C-tenellus_contig780.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1093bp|location=Sequence derived from alignment at C-tenellus_contig780:7767..8859+ (Choristocarpus tenellus KU2346)
TCTTCGATGGAAGGGAAGGCACGCGGGGTCGTGACTAAGGTCTGCTATTT CTTGATTCTTCCCGGTGCTCAAAAACCAAAAAGGGTTTGTAAACGGATGA CCATTCCAGGATGATAGGTCCCTCAAGAAACTCTCAAACCCGCGTAACAC TTTGATTCTCTTTTTCCTAATCGCCAGTCTCCTTTCGCTTGCACAGTTAC TAGAGCAGATGCTTCAGGGAGAGAAGTACCAGGCATCTCGCACACAGGAG TGGACTAACGCGATATGCTCTCAGACTGTGGCAGCCCTGCAAACGCTCAA TGATACGTTTAAGTACACAGGTATGAACGAGGAAATCAAAACCGCGATGT GTTTAGTGCCAGGAGTAGCTATATATATATATTGGTGTTGTTCTTCTTTG TCCACTTTGCCCTTTACGTCCTGCTGCGAAGGCGTGACTGCCACTCGTGT GGAGTCGGCACCCTACCCAATCTGCAGGATGTACAAAGGAAGCAACTCCA GATACACAGCAATTGTTGCTGGATACTAGCACAGATCTGGAAATAGTGAT TTCTGCATAACTATGTTTGTGAAGCAGACATGTGGTTTGGTTGTGTACAA ATCTCTCTCCACGTCTTTCGATCGATTCCAACTTTTGTCTATGCTGCCAC AGCAACCTGTGTTATCTTTCAGAAGACTGGAGGTGGAGTTCATACTGGCT CTGCCGCATGTTGGGAGCCTGAAAGAGATGGTTGCATCTTGGAGCGATGG GATAGCCCAACCATGACATGCATCATTACTGTATTTGCGTGTTCTTTGTA GACGGATGAGGAAAGGTGATGGGCCACGTGGGACAACTCTACTTTTTCAT AGGATAAGTTGCAATGGAGGCAACGGACGATGTAGTGTGCCCTTCCATCA TTATATATGGAGAGTTGTGGTTGCCCCTATTGCTTTGCATAGTGAATCCA TAATAATGACCAGTGGACCTTCAAGACTGCCAATATCTATCTTGAGATGG TATCTGACTAGAAATACAACCATTCATTGCAAATGGAGTAATCTGTATTG CTGCAGTATGTATGTGAGGATTAAGTCCTAAGAATCAACAGTT
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Coding sequence (CDS) from alignment at C-tenellus_contig780:7767..8859+

>mRNA_C-tenellus_contig780.5.1 ID=mRNA_C-tenellus_contig780.5.1|Name=mRNA_C-tenellus_contig780.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=261bp|location=Sequence derived from alignment at C-tenellus_contig780:7767..8859+ (Choristocarpus tenellus KU2346)
ATGCTTCAGGGAGAGAAGTACCAGGCATCTCGCACACAGGAGTGGACTAA
CGCGATATGCTCTCAGACTGTGGCAGCCCTGCAAACGCTCAATGATACGT
TTAAGTACACAGCAACCTGTGTTATCTTTCAGAAGACTGGAGGTGGAGTT
CATACTGGCTCTGCCGCATGTTGGGAGCCTGAAAGAGATGGTTGCATCTT
GGAGCGATGGGATAGCCCAACCATGACATGCATCATTACTGTATTTGCGT
GTTCTTTGTAG
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