mRNA_C-tenellus_contig780.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig780.1.1
Unique NamemRNA_C-tenellus_contig780.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig780.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig780contigC-tenellus_contig780:96..3245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2021
Hectar predicted targeting categoryother localisation
Exons3
Cds size1929
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790060.1178694-CDS-C-tenellus_contig780:95..3791680790060.1178694-CDS-C-tenellus_contig780:95..379Choristocarpus tenellus KU2346CDSC-tenellus_contig780 96..379 -
1680790060.441402-CDS-C-tenellus_contig780:1406..21811680790060.441402-CDS-C-tenellus_contig780:1406..2181Choristocarpus tenellus KU2346CDSC-tenellus_contig780 1407..2181 -
1680790060.9727066-CDS-C-tenellus_contig780:2283..31531680790060.9727066-CDS-C-tenellus_contig780:2283..3153Choristocarpus tenellus KU2346CDSC-tenellus_contig780 2284..3153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790060.9886823-UTR-C-tenellus_contig780:3153..32451680790060.9886823-UTR-C-tenellus_contig780:3153..3245Choristocarpus tenellus KU2346UTRC-tenellus_contig780 3154..3245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig780.1.1prot_C-tenellus_contig780.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig780 96..3153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig780.1.1

>prot_C-tenellus_contig780.1.1 ID=prot_C-tenellus_contig780.1.1|Name=mRNA_C-tenellus_contig780.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=643bp
MFGRAPSTTGFGEGGKPGGGGGGFGAASNGFQVAAFGGTKSGNTRGFGSG
TNPGLGTNSGVSGSGVFGSGRGFGTTSQFSLGSPAQQASFARSTTNGLSG
STTTTGSRGALLSLGSPAQQTSLRVGNISAGFDEPTGTRSGNPTFSSAGS
PAQQASLLSRVGTSTGFVGSTTTLGGGDISSSFISPAQQASLHGISSSGF
AGSSMTWTGIGGVSSLGSPAQQAPLRGNASSVVFGSSSMTALGSGGVLSV
GSPAQPAPLRGNASSVGFGSSSMTAWGSGGVLSVGSPAQQAPLRGNSSFV
GFGSSSMTALGSGGVSSAGPPAQQASGLGGVTPGVFGSGNGFGRAGLSSG
PKGGWVGSTPGSGGFGTMRPSVSGGIPTTGFGGVTVSSSGAPPTGVTTAL
GGGTYAEAAKRGAAAGTNGGGLHSTTAQPNAGLHRLTQANGAARSLTPHN
GTGAAAGGFVGTPSTFGGGFGVKSKTPNTGFGGVGKAPSGGVGSSVWGGF
GAKPNTVQPTGRDRSDATLGVTGFGSSNQGAGHTNGSRHRRGGLQSTGGA
STNTSISRTSMNGRGVGDGGWSTQQGRSKNGKGKTSAKPVVMKKSADNTV
GTTPWSSIGGGGGGTDNGKGSRIMGLGATDASTFTSVAPQPFL
back to top

mRNA from alignment at C-tenellus_contig780:96..3245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig780.1.1 ID=mRNA_C-tenellus_contig780.1.1|Name=mRNA_C-tenellus_contig780.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3150bp|location=Sequence derived from alignment at C-tenellus_contig780:96..3245- (Choristocarpus tenellus KU2346)
AGTACAAATAGCAATAGGGAAAAGGAAAACAGTCGCGTTCACGATTGTGA
CAGAAGAAGAGTATCCCTTTGGATGAATTCCTCGCATAAATAATGTTTGG
CCGTGCACCATCGACAACGGGGTTTGGTGAGGGAGGAAAACCTGGAGGCG
GGGGCGGTGGCTTTGGTGCTGCAAGCAATGGGTTCCAGGTTGCCGCCTTT
GGGGGGACGAAAAGTGGAAATACGCGCGGATTTGGCTCTGGGACAAATCC
AGGTTTAGGCACTAATTCTGGTGTCAGTGGGAGTGGGGTGTTTGGGAGTG
GAAGAGGCTTTGGAACAACCTCTCAATTTTCCTTAGGGTCTCCAGCACAG
CAGGCATCCTTCGCACGATCAACAACAAATGGTTTAAGTGGCTCCACAAC
GACAACAGGTAGTAGGGGGGCACTCTTGTCATTGGGTTCTCCGGCGCAGC
AGACATCTCTCCGTGTGGGAAATATATCAGCAGGTTTCGACGAACCAACA
GGAACACGGAGTGGGAACCCGACTTTCTCGTCTGCTGGGTCTCCGGCACA
ACAGGCGTCTTTGTTGTCTAGGGTAGGAACCTCTACTGGGTTTGTTGGCT
CTACAACAACACTTGGGGGGGGAGATATTTCATCATCATTCATTTCTCCA
GCGCAGCAAGCTTCACTGCACGGAATATCATCCTCAGGTTTCGCCGGTTC
CAGTATGACATGGACGGGAATCGGAGGGGTGTCATCTCTAGGATCTCCCG
CGCAGCAGGCTCCCTTGCGCGGAAATGCATCCTCAGTAGTTTTCGGCAGT
TCCAGTATGACAGCATTGGGAAGCGGAGGAGTGTTGTCTGTAGGGTCTCC
GGCGCAGCCGGCTCCTTTGCGCGGAAATGCATCCTCAGTAGGTTTCGGCA
GTTCCAGTATGACAGCATGGGGAAGTGGAGGAGTGTTGTCTGTAGGGTCT
CCGGCGCAGCAGGCTCCCTTGCGCGGAAATGCATCCTCTGTAGGTTTCGG
CAGTTCCAGTATGACAGCATGGGGAAGTGGAGGAGTGTTGTCTGTAGGGT
CTCCGGCGCAGCAGGCTCCCTTGCGCGGAAATTCATCCTTTGTAGGCTTC
GGAAGTTCCAGTATGACGGCATTGGGAAGTGGAGGAGTGTCGTCTGCAGG
GCCTCCGGCGCAGCAAGCCTCTGGGCTTGGAGGAGTGACCCCAGGAGTCT
TTGGATCGGGCAACGGCTTCGGTCGGGCAGGGCTTAGTTCAGGACCAAAA
GGTGGGTGGGTGGGGAGCACTCCAGGTAGTGGAGGTTTCGGGACAATGCG
ACCGTCTGTCTCGGGTGGTATTCCAACGACGGGTTTCGGAGGTGTCACAG
TTTCATCCTCTGGTGCACCTCCTACAGGCGTTACCACTGCACTTGGAGGT
GGGACTTACGCTGAAGCGGCCAAGCGTGGGGCAGCTGCAGGTACAAATGG
TGGGGGATTGCACAGCACTACAGCACAGCCCAATGCGGGACTCCATAGGT
TGACACAGGCGAATGGTGCAGCCCGTTCATTGACACCCCACAATGGTACT
GGTGCAGCGGCGGGTGGGTTTGTGGGAACACCAAGCACATTTGGTGGAGG
ATTTGGGGTGAAGTCCAAAACTCCCAACACAGGATTTGGTGGAGTTGGTA
AGGCCCCCAGTGGGGGGGTTGGCAGCTCAGTGTGGGGGGGTTTTGGAGCA
AAACCCAACACTGTTCAGCCTACTGGAAGGGATAGAAGTGATGCAACTTT
AGGGGTGACAGGCTTTGGTTCCTCTAATCAAGGTGCTGGCCATACCAATG
GATCAAGGCATAGGAGGGGGGGGCTACAATCAACAGGAGGTGAGTCCTAC
TTTTTCCTCCAAAATCCATAATGACAATGTTTGGAATGATGATATCTGCT
CTTACTGAGGATGAATTCTCTGAGAATATGAGAATGAACATCCCTTAGCT
TTTCATATGTTGAACCCAAGTATTAAGGAGGAGAGACCTAACCATCCACC
ATAGCTATTTGTAAATATCCTTGCTGTCCTGGATTACTTTTTTGTGCCTA
TCTCTTCACTAAATGTTTATAGTGTGATTGCAACTTTCCTTTGCGTGGAT
GAATCTGAGATGGATCGAAATGTCAGAACTGTTAGAACATGTATCAAATC
TTCTAATGCTTTTTTTGTTACAGATTGTGAAGGATTATGAATGGTACAGG
ACCTGTTGCACTGGGGAAGTGAAAGGTTGATTTTTTTTTGTGACCTACGA
GGGAAACATGATAGCTATCAACTGTGCACTCACTGTGGCTCCTAAGCACA
ACACCACCCTTAATTAAGAGAAAATATTATGCCAGAAGCTATTATTCATT
CTCTGTGGTTAGGTTTTATGCACCTGACCCTCTTTCTTGATGTTGAGGTT
AATTGTGTTGAAAGTTTCTCACAATGGAATCCTTCATACCTCTTTTCTTC
CACTTTCCCCCGAATTCAAGGTTAACATCCTATATATCTGGACATTTTGT
TGGGTATCATGAAATGTCTCTGCTTTACAGAAAGCTAGGTAGACCCTGCA
CATCCGTTCTGTCTCATGTACACATCATTTTATGTCGAAGAAAGATCGTA
ATTCCAATCGTGGCTCGGCATTTTTCCCTTGGCATATGGTGGATCCAGCT
GCTTTCATTATTTGTCATTCTTTTCTTAAAATGTCCAAATCGAGCAGCAG
GGAGGTTGCGCTTTCTTGCCAACACCAGGGGCTTTGTTATTTTTCCACAT
TTTTCTTGCTCTGCTGAAGCCCCATTTTGCCTTAGAAATTTAGTGCATTG
TCCTGATCGAAGACGATCTCTGTGTACATGAAACCCAACTTCCGTTATCA
CTCTTTCCCATGGAAGGTGCTAGTACCAACACCAGCATCAGCCGTACCAG
TATGAATGGCAGAGGTGTAGGTGATGGCGGCTGGAGCACACAGCAGGGTC
GGTCTAAGAATGGGAAGGGAAAGACAAGTGCCAAGCCAGTAGTGATGAAA
AAGTCAGCAGATAACACCGTGGGCACTACACCTTGGTCATCTATTGGGGG
TGGTGGTGGTGGGACAGACAATGGCAAGGGGTCACGAATAATGGGCCTGG
GTGCCACTGATGCTTCCACGTTTACTTCTGTGGCACCTCAGCCTTTCCTT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig780:96..3245-

>mRNA_C-tenellus_contig780.1.1 ID=mRNA_C-tenellus_contig780.1.1|Name=mRNA_C-tenellus_contig780.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1929bp|location=Sequence derived from alignment at C-tenellus_contig780:96..3245- (Choristocarpus tenellus KU2346)
ATGTTTGGCCGTGCACCATCGACAACGGGGTTTGGTGAGGGAGGAAAACC
TGGAGGCGGGGGCGGTGGCTTTGGTGCTGCAAGCAATGGGTTCCAGGTTG
CCGCCTTTGGGGGGACGAAAAGTGGAAATACGCGCGGATTTGGCTCTGGG
ACAAATCCAGGTTTAGGCACTAATTCTGGTGTCAGTGGGAGTGGGGTGTT
TGGGAGTGGAAGAGGCTTTGGAACAACCTCTCAATTTTCCTTAGGGTCTC
CAGCACAGCAGGCATCCTTCGCACGATCAACAACAAATGGTTTAAGTGGC
TCCACAACGACAACAGGTAGTAGGGGGGCACTCTTGTCATTGGGTTCTCC
GGCGCAGCAGACATCTCTCCGTGTGGGAAATATATCAGCAGGTTTCGACG
AACCAACAGGAACACGGAGTGGGAACCCGACTTTCTCGTCTGCTGGGTCT
CCGGCACAACAGGCGTCTTTGTTGTCTAGGGTAGGAACCTCTACTGGGTT
TGTTGGCTCTACAACAACACTTGGGGGGGGAGATATTTCATCATCATTCA
TTTCTCCAGCGCAGCAAGCTTCACTGCACGGAATATCATCCTCAGGTTTC
GCCGGTTCCAGTATGACATGGACGGGAATCGGAGGGGTGTCATCTCTAGG
ATCTCCCGCGCAGCAGGCTCCCTTGCGCGGAAATGCATCCTCAGTAGTTT
TCGGCAGTTCCAGTATGACAGCATTGGGAAGCGGAGGAGTGTTGTCTGTA
GGGTCTCCGGCGCAGCCGGCTCCTTTGCGCGGAAATGCATCCTCAGTAGG
TTTCGGCAGTTCCAGTATGACAGCATGGGGAAGTGGAGGAGTGTTGTCTG
TAGGGTCTCCGGCGCAGCAGGCTCCCTTGCGCGGAAATTCATCCTTTGTA
GGCTTCGGAAGTTCCAGTATGACGGCATTGGGAAGTGGAGGAGTGTCGTC
TGCAGGGCCTCCGGCGCAGCAAGCCTCTGGGCTTGGAGGAGTGACCCCAG
GAGTCTTTGGATCGGGCAACGGCTTCGGTCGGGCAGGGCTTAGTTCAGGA
CCAAAAGGTGGGTGGGTGGGGAGCACTCCAGGTAGTGGAGGTTTCGGGAC
AATGCGACCGTCTGTCTCGGGTGGTATTCCAACGACGGGTTTCGGAGGTG
TCACAGTTTCATCCTCTGGTGCACCTCCTACAGGCGTTACCACTGCACTT
GGAGGTGGGACTTACGCTGAAGCGGCCAAGCGTGGGGCAGCTGCAGGTAC
AAATGGTGGGGGATTGCACAGCACTACAGCACAGCCCAATGCGGGACTCC
ATAGGTTGACACAGGCGAATGGTGCAGCCCGTTCATTGACACCCCACAAT
GGTACTGGTGCAGCGGCGGGTGGGTTTGTGGGAACACCAAGCACATTTGG
TGGAGGATTTGGGGTGAAGTCCAAAACTCCCAACACAGGATTTGGTGGAG
TTGGTAAGGCCCCCAGTGGGGGGGTTGGCAGCTCAGTGTGGGGGGGTTTT
GGAGCAAAACCCAACACTGTTCAGCCTACTGGAAGGGATAGAAGTGATGC
AACTTTAGGGGTGACAGGCTTTGGTTCCTCTAATCAAGGTGCTGGCCATA
CCAATGGATCAAGGCATAGGAGGGGGGGGCTACAATCAACAGGAGGTGCT
AGTACCAACACCAGCATCAGCCGTACCAGTATGAATGGCAGAGGTGTAGG
TGATGGCGGCTGGAGCACACAGCAGGGTCGGTCTAAGAATGGGAAGGGAA
AGACAAGTGCCAAGCCAGTAGTGATGAAAAAGTCAGCAGATAACACCGTG
GGCACTACACCTTGGTCATCTATTGGGGGTGGTGGTGGTGGGACAGACAA
TGGCAAGGGGTCACGAATAATGGGCCTGGGTGCCACTGATGCTTCCACGT
TTACTTCTGTGGCACCTCAGCCTTTCCTT
back to top