mRNA_C-tenellus_contig78.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig78.1.1
Unique NamemRNA_C-tenellus_contig78.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig78.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig78contigC-tenellus_contig78:5865..6908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size416
Hectar predicted targeting categoryother localisation
Exons3
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790059.1927943-CDS-C-tenellus_contig78:5864..59691680790059.1927943-CDS-C-tenellus_contig78:5864..5969Choristocarpus tenellus KU2346CDSC-tenellus_contig78 5865..5969 -
1680790059.2034605-CDS-C-tenellus_contig78:6336..65301680790059.2034605-CDS-C-tenellus_contig78:6336..6530Choristocarpus tenellus KU2346CDSC-tenellus_contig78 6337..6530 -
1680790059.2156174-CDS-C-tenellus_contig78:6793..69081680790059.2156174-CDS-C-tenellus_contig78:6793..6908Choristocarpus tenellus KU2346CDSC-tenellus_contig78 6794..6908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig78.1.1prot_C-tenellus_contig78.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig78 5865..6908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig78.1.1

>prot_C-tenellus_contig78.1.1 ID=prot_C-tenellus_contig78.1.1|Name=mRNA_C-tenellus_contig78.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=138bp
SILRPLILPTSGTILEVFTHDTARRSFEQMNSLQDEQGETDHHIVPPESD
VGVPKEKALLLDVGPRNPIVIAISQGYQAAEGEASSVLLALSQGGLPSPR
PEQVASSIGGEGEQQITTPIQSLGVRLDDRIFSYKKEP
back to top

mRNA from alignment at C-tenellus_contig78:5865..6908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig78.1.1 ID=mRNA_C-tenellus_contig78.1.1|Name=mRNA_C-tenellus_contig78.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1044bp|location=Sequence derived from alignment at C-tenellus_contig78:5865..6908- (Choristocarpus tenellus KU2346)
TCCATACTACGCCCACTCATTCTGCCAACATCTGGAACGATCCTCGAGGT
ATTCACACACGATACAGCGCGACGGAGCTTTGAGCAGATGAACTCCCTCC
AGGATGAACAGGGGGGTGGGTAACAGTCTTGGGCACGTGACGCACCAGTA
GTTGCTAAAAAAAAAATACTATTGGCATTGTTTAAGTGGACTCTGGACGG
TTTCTTGAGTGCTCCAAATGGTGATCGGCAAGCCATTCCTATTCCTATGA
TCCTGTGCTTAGTGCCTAAGGTAACGGATCCACCGTACCTCATGTTCCAA
CCCATAAAACGTAATCATCCAGAACCCGCCTGTCCCCGCCCCTTTTTGCG
CATGAATCAACCTTCTTAACACCTCTAGAAACCGATCACCACATCGTCCC
GCCCGAGTCGGATGTCGGGGTACCCAAAGAAAAGGCACTTCTTCTCGATG
TGGGCCCCAGAAACCCGATAGTGATTGCGATTTCTCAGGGGTATCAAGCA
GCTGAGGGTGAGGCCTCGTCCGTACTACTCGCATTGTCCCAAGGAGGTCT
TCCTTCTCCTCGACCTGAACAGGTGATAGTGATGCCATCGGGAGTGGTTG
TTGCGAAGATTGTAAATTCGGCACCGAAACGTCCCCTTGTTGTCCACATT
CGTTTCGCCCACTAGCTTTAACGATATTTTCCCTCCAAGGTTTAGGTGGT
ATCCTCCTTTGTGTGGGCATGCAACTCGATATCTCCACCTAATTGTCCGT
TTCTTCGAGTTTCGCCTTCACTTCCCACAGTCGTTCCCTACCCCTTGACG
GGGTGCGACCATTGAACGACACAGACACCGCTATGCATAGGGGGTGAATG
AACATAGAGGTATCCTGCTCTCCAAAATGCAAAAACCTCATACCACCTAT
TACTCGTGTGTGTGCGTAACTCCGTTGATACACAAATAGGTTGCATCGTC
CATTGGAGGGGAGGGAGAACAACAAATCACCACTCCAATTCAAAGTCTCG
GTGTAAGGCTTGATGATAGGATATTTTCCTATAAGAAGGAACCC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig78:5865..6908-

>mRNA_C-tenellus_contig78.1.1 ID=mRNA_C-tenellus_contig78.1.1|Name=mRNA_C-tenellus_contig78.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=414bp|location=Sequence derived from alignment at C-tenellus_contig78:5865..6908- (Choristocarpus tenellus KU2346)
TCCATACTACGCCCACTCATTCTGCCAACATCTGGAACGATCCTCGAGGT
ATTCACACACGATACAGCGCGACGGAGCTTTGAGCAGATGAACTCCCTCC
AGGATGAACAGGGGGAAACCGATCACCACATCGTCCCGCCCGAGTCGGAT
GTCGGGGTACCCAAAGAAAAGGCACTTCTTCTCGATGTGGGCCCCAGAAA
CCCGATAGTGATTGCGATTTCTCAGGGGTATCAAGCAGCTGAGGGTGAGG
CCTCGTCCGTACTACTCGCATTGTCCCAAGGAGGTCTTCCTTCTCCTCGA
CCTGAACAGGTTGCATCGTCCATTGGAGGGGAGGGAGAACAACAAATCAC
CACTCCAATTCAAAGTCTCGGTGTAAGGCTTGATGATAGGATATTTTCCT
ATAAGAAGGAACCC
back to top